IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1336	 45.66	+2	1570330..1573185	+	951	209694970	fdhA	VSAL_I1453	-	formate dehydrogenase
1337	 46.47	+2	1573197..1573805	+	202	209694971	fdhB	VSAL_I1454	-	formate dehydrogenase iron-sulfur subunit
1338	 43.04	+1	1573822..1574841	+	339	209694972	fdnI	VSAL_I1455	-	putative formate dehydrogenase
1339	 39.70	0	1575087..1575620	+	177	209694973	rimL	VSAL_I1456	-	ribosomal-protein-serine acetyltransferase
1340	 37.54	0	1575814..1576692	+	292	209694974	-	VSAL_I1457	-	hypothetical protein
1341	 35.94	-1	1578104..1578985	+	293	209694975	-	VSAL_I1459	-	transposase
1342	 27.05	-2	1579165..1579944	+	259	209694976	-	VSAL_I1460	-	HTH-type transcriptional regulator, AraC family
1343	 34.04	-1	1581620..1582186	-	188	209694977	-	VSAL_I1463	-	transposase
1344	 35.70	-1	1582204..1582626	-	140	209694978	-	VSAL_I1464	-	transposase
1345	 25.00	-2	1583625..1583840	+	71	209694979	-	VSAL_I1465	-	hypothetical protein
1346	 39.60	0	1583876..1584832	-	318	209694980	-	VSAL_I1466	-	transposase
1347	 37.12	0	1585157..1585579	+	140	209694981	-	VSAL_I1467	-	hypothetical protein
1348	 38.25	0	1585901..1586185	-	94	209694982	-	VSAL_I1469	-	putative plasmid stabilisation system protein
1349	 40.16	0	1586175..1586423	-	82	209694983	-	VSAL_I1470	-	hypothetical protein
1350	 41.19	0	1586716..1587504	+	262	209694984	-	VSAL_I1471	-	putative antibiotic resistance protein
1351	 40.18	0	1587526..1587978	+	150	209694985	-	VSAL_I1472	-	NUDIX hydrolase
1352	 34.93	-1	1588003..1588503	+	166	209694986	-	VSAL_I1473	-	putative acetyltransferase
1353	 36.93	0	1588718..1589356	+	212	209694987	-	VSAL_I1475	-	outer membrane protein
1354	 34.95	-1	1589483..1589914	+	143	209694988	-	VSAL_I1476	-	membrane protein
1355	 35.70	-1	1590020..1590442	+	140	209694989	-	VSAL_I1477	-	transposase
1356	 34.04	-1	1590460..1591026	+	188	209694990	-	VSAL_I1478	-	transposase
1357	 36.52	0	1592512..1592919	+	135	209694991	-	VSAL_I1481	-	putative lipoprotein
1358	 44.89	+1	1592965..1593717	+	250	209694992	-	VSAL_I1482	-	glucose 1-dehydrogenase
1359	 41.03	0	1593892..1594086	+	64	209694993	-	VSAL_I1483	-	hypothetical protein
1360	 39.75	0	1594166..1594882	-	238	209694994	-	VSAL_I1484	-	short chain dehydrogenase
1361	 40.92	0	1595114..1595812	+	232	209694995	-	VSAL_I1485	-	hypothetical protein
1362	 38.61	0	1596113..1596643	+	176	209694996	-	VSAL_I1486	-	cold-shock protein
1363	 45.76	+2	1596738..1597091	+	117	209694997	-	VSAL_I1487	-	hypothetical protein
1364	 37.27	0	1597367..1598788	+	473	209694998	-	VSAL_I1488	-	hypothetical protein
1365	 37.66	0	1599131..1599523	+	130	209694999	-	VSAL_I1489	-	hypothetical protein
1366	 35.65	-1	1599692..1599907	-	71	209695000	-	VSAL_I1490	-	hypothetical protein
1367	 35.70	-1	1600270..1600692	+	140	209695001	-	VSAL_I1491	-	transposase
1368	 34.04	-1	1600710..1601276	+	188	209695002	-	VSAL_I1492	-	transposase
1369	 39.48	0	1604231..1604734	+	167	209695003	-	VSAL_I1494	-	putative acetyltransferase
1370	 37.43	0	1604742..1605449	-	235	209695004	-	VSAL_I1495	-	hypothetical protein
1371	 39.47	0	1606036..1606524	+	162	209695005	-	VSAL_I1497	-	putative lipoprotein
1372	 40.40	0	1606663..1606860	+	65	209695006	-	VSAL_I1498	-	hypothetical protein
1373	 34.67	-1	1607000..1607149	+	49	209695007	-	VSAL_I1499	-	hypothetical protein
1374	 39.01	0	1607153..1607434	+	93	209695008	-	VSAL_I1500	-	hypothetical protein
1375	 39.37	0	1607512..1608273	-	253	209695009	-	VSAL_I1501	-	hypothetical protein
1376	 36.84	0	1608471..1608926	+	151	209695010	-	VSAL_I1502	-	putative acyltransferase
1377	 33.94	-1	1608986..1609150	-	54	209695011	-	VSAL_I1503	-	hypothetical protein
1378	 38.25	0	1609303..1609851	+	182	209695012	maa	VSAL_I1504	-	maltose O-acetyltransferase
1379	 37.09	0	1609971..1610396	+	141	209695013	-	VSAL_I1505	-	hypothetical protein
1380	 40.20	0	1610424..1611224	+	266	209695014	-	VSAL_I1506	-	putative phenazine biosynthesis-like protein
1381	 37.50	0	1611272..1611775	+	167	209695015	-	VSAL_I1507	-	putative acetyltransferase
1382	 36.93	0	1611858..1612607	-	249	209695016	OMT5	VSAL_I1508	-	putative methyltransferase
1383	 37.86	0	1612856..1613518	+	220	209695017	-	VSAL_I1509	-	hypothetical protein
1384	 42.69	+1	1613721..1614158	+	145	209695018	-	VSAL_I1510	-	hypothetical protein
1385	 37.68	0	1614222..1614635	+	137	209695019	-	VSAL_I1511	-	hypothetical protein
1386	 35.96	-1	1614657..1614923	+	88	209695020	-	VSAL_I1512	-	membrane protein
1387	 39.81	0	1614978..1615610	+	210	209695021	-	VSAL_I1513	-	putative metal dependent phosphohydrolase
1388	 42.46	0	1615691..1617301	-	536	209695022	-	VSAL_I1514	-	FAD dependent oxidoreductase
1389	 42.12	0	1617403..1618347	-	314	209695023	-	VSAL_I1515	-	HTH-type transcriptional regulator, LysR-family
1390	 42.69	+1	1618507..1619874	+	455	209695024	-	VSAL_I1516	-	putative multidrug resistance protein
1391	 37.14	0	1619937..1620593	+	218	209695025	-	VSAL_I1517	-	hypothetical protein
1392	 34.13	-1	1620854..1620979	+	41	209695026	-	VSAL_I1518	-	hypothetical protein
1393	 38.18	0	1621031..1621381	+	116	209695027	-	VSAL_I1519	-	hypothetical protein
1394	 37.18	0	1621436..1621981	+	181	209695028	-	VSAL_I1520	-	hypothetical protein
1395	 35.94	-1	1622833..1623714	-	293	209695029	-	VSAL_I1522	-	transposase
1396	 36.07	-1	1625550..1626425	+	291	209695030	-	VSAL_I1524	-	mechanosensitive ion channel
1397	 35.14	-1	1628943..1629386	-	147	209695031	-	VSAL_I1526	-	membrane protein
1398	 37.28	0	1629520..1630077	+	185	209695032	-	VSAL_I1527	-	HTH-type transcriptional regulator, TetR family
1399	 38.32	0	1630109..1630489	+	126	209695033	-	VSAL_I1528	-	hypothetical protein
1400	 39.89	0	1630666..1631229	+	187	209695034	-	VSAL_I1529	-	putative glutaredoxin
1401	 34.80	-1	1631245..1631928	+	227	209695035	-	VSAL_I1530	-	membrane protein
1402	 37.04	0	1632037..1632198	+	53	209695036	-	VSAL_I1531	-	hypothetical protein
1403	 38.08	0	1632486..1633874	+	462	209695037	-	VSAL_I1532	-	putative exported amidohydrolase
1404	 36.51	0	1634028..1634342	+	104	209695038	-	VSAL_I1533	-	hypothetical protein
1405	 38.19	0	1634685..1635446	-	253	209695039	-	VSAL_I1534	-	extracellular solute-binding protein
1406	 40.16	0	1635734..1636627	+	297	209695040	-	VSAL_I1535	-	membrane protein
1407	 38.98	0	1636724..1637290	+	188	209695041	yeiP	VSAL_I1536	-	elongation factor P-like protein
1408	 40.24	0	1637373..1638545	-	390	209695042	-	VSAL_I1537	-	membrane protein
1409	 40.86	0	1638580..1640001	-	473	209695043	-	VSAL_I1538	-	hypothetical protein
1410	 39.20	0	1640170..1642812	-	880	209695044	-	VSAL_I1539	-	hypothetical protein
1411	 40.02	0	1642790..1644016	-	408	209695045	-	VSAL_I1540	-	paraquat-inducible membrane protein A
1412	 38.35	0	1644034..1645827	-	597	209695046	-	VSAL_I1541	-	ABC transporter ATP-binding protein
1413	 35.54	-1	1645945..1646397	+	150	209695047	-	VSAL_I1542	-	hypothetical protein
1414	 43.13	+1	1646621..1647253	+	210	209695048	proQ	VSAL_I1543	-	ProP effector
1415	 37.94	0	1647271..1649289	+	672	209695049	prc	VSAL_I1544	-	tail-specific protease precursor
1416	 29.63	-2	1649358..1650140	+	260	209695050	-	VSAL_I1545	-	hypothetical protein
1417	 38.22	0	1653013..1653237	+	74	209695051	-	VSAL_I1547	-	hypothetical protein
1418	 39.66	0	1658502..1659512	+	336	209695052	pyrD	VSAL_I1549	-	dihydroorotate dehydrogenase
1419	 39.26	0	1659678..1660268	+	196	209695053	-	VSAL_I1550	-	hypothetical protein
1420	 39.73	0	1660800..1662956	+	718	209695054	-	VSAL_I1551	-	putative RNA methylase
1421	 39.09	0	1662962..1663204	+	80	209695055	-	VSAL_I1552	-	putative glutaredoxin
1422	 39.77	0	1663185..1665095	+	636	209695056	uup	VSAL_I1553	-	ABC transporter ATP-binding protein
1423	 40.54	0	1665104..1666768	+	554	209695057	-	VSAL_I1554	-	hypothetical protein
1424	 44.83	+1	1666969..1667142	+	57	209695058	rmf	VSAL_I1555	-	ribosome modulation factor
1425	 41.23	0	1667298..1667816	-	172	209695059	fabA	VSAL_I1556	-	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase
1426	 37.95	0	1667882..1669549	-	555	209695060	-	VSAL_I1557	-	putative protease La homolog
1427	 31.77	-2	1669730..1670176	+	148	209695061	-	VSAL_I1558	-	hypothetical protein
1428	 33.88	-1	1670230..1670781	-	183	209695062	-	VSAL_I1559	-	putative lipoprotein
1429	 33.57	-1	1671140..1673233	-	697	209695063	-	VSAL_I1560	-	response regulator, histidine kinase
1430	 35.78	-1	1673234..1674418	-	394	209695064	-	VSAL_I1561	-	hypothetical protein
1431	 34.65	-1	1674517..1674972	-	151	209695065	-	VSAL_I1562	-	hypothetical protein
1432	 41.51	0	1675242..1676672	+	476	209695066	ctaD	VSAL_I1563	-	cytochrome c oxidase subunit 1
1433	 42.32	0	1676685..1677296	+	203	209695067	fixO	VSAL_I1564	-	mono-heme cytochrome c
1434	 38.80	0	1677307..1677489	+	60	209695068	-	VSAL_I1565	-	Cbb3-type cytochrome oxidase component
1435	 41.85	0	1677486..1678460	+	324	209695069	-	VSAL_I1566	-	diheme cytochrome c
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.