IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1251	 40.74	0	1474582..1474932	+	116	209694885	-	VSAL_I1356	-	hypothetical protein
1252	 43.55	+1	1475219..1475737	+	172	209694886	hpc	VSAL_I1357	-	secreted protein Hcp-2 (haemolysin co-regulated protein)
1253	 43.31	+1	1475814..1478078	+	754	209694887	-	VSAL_I1358	-	VgrG preotein, VgrG-2
1254	 39.73	0	1478060..1478653	+	197	209694888	-	VSAL_I1359	-	hypothetical protein
1255	 36.21	-1	1482240..1482587	-	115	209694889	-	VSAL_I1362	-	transposase
1256	 37.78	0	1482584..1482898	-	104	209694890	-	VSAL_I1363	-	transposase
1257	 41.23	0	1482981..1485653	-	890	209694891	-	VSAL_I1364	-	putative exported nuclease
1258	 35.94	-1	1485914..1486795	-	293	209694892	-	VSAL_I1365	-	transposase
1259	 40.94	0	1487015..1487869	+	284	209694893	-	VSAL_I1366	-	ATP-dependent DNA ligase
1260	 41.32	0	1487925..1488926	-	333	209694894	rbsR	VSAL_I1367	-	ribose operon repressor
1261	 45.32	+1	1489002..1489919	-	305	209694895	rbsK	VSAL_I1368	-	ribokinase
1262	 45.16	+1	1490100..1490978	-	292	209694896	rbsB	VSAL_I1369	-	D-ribose-binding periplasmic protein precursor RbsB
1263	 43.62	+1	1491115..1492086	-	323	209694897	rbsC	VSAL_I1370	-	ribose transport system permease protein RbsC
1264	 41.06	0	1492098..1493612	-	504	209694898	rbsA	VSAL_I1371	-	ribose transport ATP-binding protein RbsA
1265	 38.57	0	1493673..1494092	-	139	209694899	rbsD	VSAL_I1372	-	high affinity ribose transport protein RbsD
1266	 40.74	0	1494476..1494637	+	53	209694900	-	VSAL_I1373	-	hypothetical protein
1267	 40.18	0	1494709..1495161	+	150	209694901	-	VSAL_I1374	-	membrane protein
1268	 33.74	-1	1495390..1495632	+	80	209694902	-	VSAL_I1375	-	membrane protein
1269	 34.72	-1	1495877..1496020	+	47	209694903	-	VSAL_I1376	-	hypothetical protein, putative gene remnant
1270	 36.89	0	1496286..1496651	+	121	209694904	-	VSAL_I1377	-	putative lipoprotein
1271	 34.04	-1	1496780..1497346	-	188	209694905	-	VSAL_I1378	-	transposase
1272	 35.70	-1	1497364..1497786	-	140	209694906	-	VSAL_I1379	-	transposase
1273	 35.28	-1	1498417..1499034	+	205	209694907	-	VSAL_I1381	-	putative lipoprotein
1274	 42.37	0	1499112..1500494	-	460	209694908	norM	VSAL_I1382	-	multidrug resistance protein NorM (sodium/drug antiporter)
1275	 37.91	0	1500753..1501364	+	203	209694909	ribE	VSAL_I1383	-	riboflavin synthase alpha chain
1276	 36.76	0	1501380..1501583	-	67	209694910	-	VSAL_I1384	-	hypothetical protein
1277	 38.41	0	1501813..1502679	-	288	209694911	-	VSAL_I1385	-	hypothetical protein
1278	 38.10	0	1502924..1503259	+	111	209694912	-	VSAL_I1386	-	hypothetical protein
1279	 38.24	0	1503335..1503823	-	162	209694913	-	VSAL_I1387	-	putative lipoprotein
1280	 43.06	+1	1504126..1505718	+	530	209694914	-	VSAL_I1388	-	putative ion transporter
1281	 37.25	0	1505861..1506550	+	229	209694915	rsuA	VSAL_I1389	-	ribosomal small subunit pseudouridine synthase A
1282	 37.56	0	1506586..1507389	-	267	209694916	-	VSAL_I1390	-	membrane protein
1283	 38.17	0	1507476..1508219	+	247	209694917	-	VSAL_I1391	-	hypothetical protein
1284	 40.92	0	1508346..1509254	+	302	209694918	-	VSAL_I1392	-	putative outer membrane protein
1285	 37.84	0	1509379..1509711	-	110	209694919	-	VSAL_I1393	-	hypothetical protein
1286	 34.15	-1	1510487..1512079	+	530	209694920	-	VSAL_I1394	-	hypothetical protein
1287	 33.33	-1	1512083..1512886	+	267	209694921	-	VSAL_I1395	-	membrane protein
1288	 38.53	0	1513088..1513318	+	76	209694922	-	VSAL_I1396	-	putative DNA-damage-inducible protein I (DinI)
1289	 41.19	0	1513835..1515616	-	593	209694923	moeA	VSAL_I1397	-	molybdopterin biosynthesis protein MoeA
1290	 39.66	0	1515613..1516197	-	194	209694924	mobA	VSAL_I1398	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1291	 41.19	0	1516209..1516883	-	224	209694925	-	VSAL_I1399	-	ABC transporter, ATP-binding protein
1292	 40.63	0	1517596..1518417	-	273	209694926	tupA	VSAL_I1401	-	extracellular tungstate binding protein precursor
1293	 39.15	0	1520143..1522170	+	675	209694927	-	VSAL_I1403	-	signal transduction protein, histidine kinase
1294	 35.07	-1	1522197..1522598	+	133	209694928	-	VSAL_I1404	-	hypothetical protein
1295	 36.07	-1	1522687..1522869	-	60	209694929	-	VSAL_I1405	-	hypothetical protein
1296	 37.04	0	1523086..1523517	+	143	209694930	-	VSAL_I1406	-	membrane protein
1297	 37.57	0	1523869..1524600	+	243	209694931	-	VSAL_I1407	-	putative glycosyl transferase
1298	 37.31	0	1524623..1525201	+	192	209694932	-	VSAL_I1408	-	membrane protein
1299	 35.83	-1	1526495..1527376	-	293	209694933	-	VSAL_I1410	-	transposase
1300	 38.56	0	1528352..1528810	+	152	209694934	-	VSAL_I1411	-	hypothetical protein
1301	 38.64	0	1528916..1529311	+	131	209694935	-	VSAL_I1412	-	hypothetical protein
1302	 35.79	-1	1529362..1529850	+	162	209694936	-	VSAL_I1413	-	hypothetical protein
1303	 37.78	0	1530171..1530485	+	104	209694937	-	VSAL_I1415	-	transposase
1304	 36.21	-1	1530482..1530829	+	115	209694938	-	VSAL_I1416	-	transposase
1305	 39.85	0	1530901..1532388	+	495	209694939	-	VSAL_I1417	-	transposase
1306	 38.48	0	1534103..1534549	+	148	209694940	-	VSAL_I1418	-	putative acetyltransferase
1307	 38.57	0	1534590..1535009	+	139	209694941	-	VSAL_I1419	-	putative acetyltransferase
1308	 37.52	0	1535018..1535806	+	262	209694942	-	VSAL_I1420	-	hypothetical protein
1309	 39.59	0	1535830..1536660	+	276	209694943	-	VSAL_I1421	-	sulfurtransferase (rhodanese-like protein)
1310	 32.88	-2	1536688..1536906	+	72	209694944	-	VSAL_I1422	-	hypothetical protein
1311	 35.64	-1	1537500..1537976	+	158	209694945	-	VSAL_I1424	-	putative acetyltransferase
1312	 34.04	-1	1538051..1538617	-	188	209694946	-	VSAL_I1425	-	transposase
1313	 35.70	-1	1538635..1539057	-	140	209694947	-	VSAL_I1426	-	transposase
1314	 31.67	-2	1539188..1539427	-	79	209694948	-	VSAL_I1427	-	hypothetical protein
1315	 39.26	0	1540076..1540750	-	224	209694949	-	VSAL_I1428	-	hypothetical protein
1316	 40.54	0	1541787..1542980	-	397	209694950	-	VSAL_I1430	-	transposase
1317	 36.91	0	1544754..1545284	+	176	209694951	-	VSAL_I1431	-	putative acetyltransferase
1318	 38.46	0	1545349..1545699	+	116	209694952	-	VSAL_I1432	-	hypothetical protein
1319	 40.39	0	1546052..1548943	+	963	209694953	-	VSAL_I1433	-	hypothetical protein
1320	 43.13	+1	1550006..1550791	+	261	209694954	-	VSAL_I1435	-	hypothetical protein
1321	 44.67	+1	1550854..1551594	+	246	209694955	-	VSAL_I1436	-	hypothetical protein
1322	 42.08	0	1551597..1552316	+	239	209694956	-	VSAL_I1437	-	putative allophanate hydrolase subunit 1
1323	 43.78	+1	1552313..1553269	+	318	209694957	-	VSAL_I1438	-	putative allophanate hydrolase subunit 2
1324	 37.78	0	1553364..1553678	+	104	209694958	-	VSAL_I1439	-	transposase
1325	 35.94	-1	1553950..1554831	-	293	209694959	-	VSAL_I1441	-	transposase
1326	 39.65	0	1555101..1556588	+	495	209694960	-	VSAL_I1442	-	transposase
1327	 43.64	+1	1556716..1557957	+	413	209694961	-	VSAL_I1443	-	putative transmembrane transport protein
1328	 40.70	0	1558822..1560015	-	397	209694962	-	VSAL_I1445	-	transposase
1329	 39.93	0	1562147..1563268	+	373	209694963	mltC	VSAL_I1446	-	membrane-bound lytic murein transglycosylase C
1330	 35.28	-1	1563304..1565457	+	717	209694964	-	VSAL_I1447	-	putative metal dependent phosphohydrolases
1331	 44.37	+1	1565543..1566394	-	283	209694965	-	VSAL_I1448	-	putative formate dehydrogenase accessory protein
1332	 41.67	0	1566536..1567543	+	335	209694966	-	VSAL_I1449	-	hypothetical protein
1333	 43.17	+1	1567750..1569426	+	558	209694967	-	VSAL_I1450	-	putative ferredoxin
1334	 44.12	+1	1569431..1570042	+	203	209694968	-	VSAL_I1451	-	putative cytoplasmic chaperone TorD
1335	 44.44	+1	1570121..1570318	+	65	209694969	-	VSAL_I1452	-	hypothetical protein
1336	 45.66	+2	1570330..1573185	+	951	209694970	fdhA	VSAL_I1453	-	formate dehydrogenase
1337	 46.47	+2	1573197..1573805	+	202	209694971	fdhB	VSAL_I1454	-	formate dehydrogenase iron-sulfur subunit
1338	 43.04	+1	1573822..1574841	+	339	209694972	fdnI	VSAL_I1455	-	putative formate dehydrogenase
1339	 39.70	0	1575087..1575620	+	177	209694973	rimL	VSAL_I1456	-	ribosomal-protein-serine acetyltransferase
1340	 37.54	0	1575814..1576692	+	292	209694974	-	VSAL_I1457	-	hypothetical protein
1341	 35.94	-1	1578104..1578985	+	293	209694975	-	VSAL_I1459	-	transposase
1342	 27.05	-2	1579165..1579944	+	259	209694976	-	VSAL_I1460	-	HTH-type transcriptional regulator, AraC family
1343	 34.04	-1	1581620..1582186	-	188	209694977	-	VSAL_I1463	-	transposase
1344	 35.70	-1	1582204..1582626	-	140	209694978	-	VSAL_I1464	-	transposase
1345	 25.00	-2	1583625..1583840	+	71	209694979	-	VSAL_I1465	-	hypothetical protein
1346	 39.60	0	1583876..1584832	-	318	209694980	-	VSAL_I1466	-	transposase
1347	 37.12	0	1585157..1585579	+	140	209694981	-	VSAL_I1467	-	hypothetical protein
1348	 38.25	0	1585901..1586185	-	94	209694982	-	VSAL_I1469	-	putative plasmid stabilisation system protein
1349	 40.16	0	1586175..1586423	-	82	209694983	-	VSAL_I1470	-	hypothetical protein
1350	 41.19	0	1586716..1587504	+	262	209694984	-	VSAL_I1471	-	putative antibiotic resistance protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.