version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 79 40.89 0 117758..120826 - 1022 209693713 - VSAL_I0089 - putative integral membrane component of multidrug efflux system 80 39.30 0 120838..121944 - 368 209693714 - VSAL_I0090 - putative multidrug transporter, HlyD family 81 37.00 0 121963..122562 - 199 209693715 - VSAL_I0091 - HTH-type transcriptional regulator, TetR family 82 39.58 0 122717..124732 + 671 209693716 rep VSAL_I0092 - ATP-dependent DNA helicase rep 83 43.63 +1 124833..125240 - 135 209693717 - VSAL_I0093 - cytochrome c 84 41.76 0 128498..130051 + 517 209693718 - VSAL_I0095 - transport protein, extracellular solute-binding protein 85 40.29 0 130188..131165 + 325 209693719 - VSAL_I0096 - binding-protein-dependent transport system,inner membrane component 86 42.46 0 131168..132109 + 313 209693720 - VSAL_I0097 - binding-protein-dependent transport system,inner membrane component 87 43.26 +1 132347..133927 + 526 209693721 - VSAL_I0098 - transporter, BCCT family 88 40.03 0 134012..134728 - 238 209693722 - VSAL_I0099 - putative exonuclease 89 40.99 0 134738..136618 - 626 209693723 - VSAL_I0100 - putative cyclic nucleotide binding protein 90 41.18 0 136794..137672 + 292 209693724 - VSAL_I0101 - hypothetical protein 91 39.39 0 137656..137919 + 87 209693725 - VSAL_I0102 - hypothetical protein 92 38.81 0 137970..139940 - 656 209693726 - VSAL_I0103 - HTH-type transcriptional regulator 93 42.38 0 140087..140827 - 246 209693727 - VSAL_I0104 - hypothetical protein 94 42.60 +1 140840..141886 - 348 209693728 - VSAL_I0105 - hypothetical protein 95 40.72 0 141927..143063 - 378 209693729 - VSAL_I0106 - hypothetical protein 96 45.62 +1 143122..143772 - 216 209693730 - VSAL_I0107 - membrane protein 97 47.18 +2 143787..144566 - 259 209693731 - VSAL_I0108 - membrane protein 98 28.62 -2 144627..144923 - 98 209693732 - VSAL_I0109 - hypothetical protein 99 45.18 +1 144926..145288 - 120 209693733 - VSAL_I0110 - hypothetical protein 100 31.03 -2 145290..145637 - 115 209693734 - VSAL_I0111 - hypothetical protein 101 36.05 -1 145902..146783 + 293 209693735 - VSAL_I0112 - transposase 102 37.78 0 146904..147218 + 104 209693736 - VSAL_I0113 - transposase 103 36.21 -1 147215..147562 + 115 209693737 - VSAL_I0114 - transposase 104 39.72 0 147634..149121 + 495 209693738 - VSAL_I0115 - transposase 105 36.60 0 149312..151027 - 571 209693739 - VSAL_I0116 - hypothetical protein 106 33.16 -2 151287..151856 - 189 209693740 - VSAL_I0117 - putative RNA polymerase sigma factor 107 33.04 -2 151960..153300 - 446 209693741 - VSAL_I0118 - putative protein kinase 108 38.92 0 153609..154199 + 196 209693742 - VSAL_I0119 - hypothetical protein 109 43.36 +1 154286..155641 - 451 209693743 gor VSAL_I0120 - glutathione reductase 110 41.07 0 155854..156693 - 279 209693744 - VSAL_I0121 - hypothetical protein 111 43.42 +1 156846..158888 + 680 209693745 prlC VSAL_I0122 - oligopeptidase A 112 39.65 0 158962..160401 - 479 209693746 - VSAL_I0123 - putative exported peptidase 113 37.78 0 160523..160837 - 104 209693747 cyaY VSAL_I0124 - protein CyaY 114 42.82 +1 161114..162367 + 417 209693748 lysA VSAL_I0125 - diaminopimelate decarboxylase 115 42.60 +1 162449..163279 + 276 209693749 dapF VSAL_I0126 - diaminopimelate epimerase 116 39.46 0 163276..163977 + 233 209693750 - VSAL_I0127 - hypothetical protein 117 42.11 0 163970..164881 + 303 209693751 xerC VSAL_I0128 - tyrosine recombinase XerC 118 37.78 0 165050..165364 + 104 209693752 - VSAL_I0129 - transposase 119 40.47 0 165725..166915 - 396 209693753 - VSAL_I0131 - transposase 120 39.42 0 167270..167860 + 196 209693754 - VSAL_I0132 - putative lipoprotein 121 37.33 0 167877..169328 + 483 209693755 - VSAL_I0133 - hypothetical protein 122 39.92 0 169900..171447 + 515 209693756 - VSAL_I0134 - L-2,4-diaminobutyrate decarboxylase 123 39.73 0 171464..172792 + 442 209693757 iucD VSAL_I0135 - siderophore biosynthetis protein 124 39.67 0 172803..175262 + 819 209693758 iucC VSAL_I0136 - siderophore biosynthesis protein 125 40.58 0 175286..177451 + 721 209693759 - VSAL_I0137 - TonB-dependent iron-siderophore receptor precursor 126 43.32 +1 177570..178520 + 316 209693760 - VSAL_I0138 - iron-siderophore ABC transporter, periplasmic binding protein 127 43.42 +1 178517..179617 + 366 209693761 fepD VSAL_I0139 - iron-siderophore ABC transporter, membrane permease component 128 46.00 +2 179607..180632 + 341 209693762 fecD VSAL_I0140 - iron-siderophore ABC transporter, membrane permease component 129 43.00 +1 180647..181453 + 268 209693763 fepC VSAL_I0141 - iron-siderophore ABC transporter, ATP-binding protein 130 37.78 0 181578..181892 + 104 209693764 - VSAL_I0142 - transposase 131 36.21 -1 181889..182236 + 115 209693765 - VSAL_I0143 - transposase 132 39.72 0 182308..183795 + 495 209693766 - VSAL_I0144 - transposase 133 43.75 +1 185316..186620 - 434 209693767 rhlB VSAL_I0146 - ATP-dependent RNA helicase RhlB 134 40.67 0 186733..187059 + 108 209693768 trxA VSAL_I0147 - thioredoxin 1 135 41.83 0 187298..188557 + 419 209693769 rho VSAL_I0148 - transcription termination factor rho 136 41.74 0 188701..189723 + 340 209693770 - VSAL_I0149 - hypothetical protein 137 42.56 +1 189820..191661 + 613 209693771 ubiD VSAL_I0150 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 138 39.02 0 191658..191921 + 87 209693772 - VSAL_I0151 - putative ferredoxin 139 43.46 +1 192020..192730 + 236 209693773 fre VSAL_I0152 - NAD(P)H-flavin reductase 140 37.78 0 194735..195049 - 104 209693774 - VSAL_I0155 - transposase 141 38.69 0 195363..197342 - 659 209693775 - VSAL_I0157 - membrane associated sulfatase 142 41.51 0 197379..198197 - 272 209693776 mutM VSAL_I0158 - formamidopyrimidine-DNA glycosylase 143 42.89 +1 198490..199431 + 313 209693777 hldD VSAL_I0159 - ADP-L-glycero-D-manno-heptose-6-epimerase 144 39.77 0 199602..200828 + 408 209693778 waaL VSAL_I0160 - O-antigen ligase WaaL 145 41.83 0 200825..201895 + 356 209693779 rfaF VSAL_I0161 - ADP-heptose-LPS heptosyltransferase II 146 40.06 0 201889..203151 + 420 209693780 kdtA VSAL_I0162 - 3-deoxy-D-manno-octulosonic-acid transferase 147 35.03 -1 203198..204199 + 333 209693781 - VSAL_I0163 - hypothetical protein 148 39.60 0 204352..205308 - 318 209693782 - VSAL_I0164 - transposase 149 34.78 -1 205561..206664 - 367 209693783 - VSAL_I0165 - hypothetical protein, putative pseudaminic acid biosynthesis protein 150 37.96 0 207356..208414 - 352 209693784 - VSAL_I0167 - nucleotidyl transferase 151 39.38 0 208430..209074 - 214 209693785 - VSAL_I0168 - putative acetyltransferase 152 40.13 0 209067..210140 - 357 209693786 - VSAL_I0169 - N-acetylneuraminic acid synthase 153 39.75 0 210148..211332 - 394 209693787 - VSAL_I0170 - UDP-N-acetylglucosamine 2-epimerase 154 40.75 0 211370..212515 - 381 209693788 - VSAL_I0171 - DegT/DnrJ/EryC1/StrS aminotransferase 155 37.87 0 212539..213729 - 396 209693789 - VSAL_I0172 - polysaccharide biosynthesis protein 156 33.07 -2 213847..214968 - 373 209693790 - VSAL_I0173 - hypothetical protein 157 34.03 -1 214965..216107 - 380 209693791 rffA VSAL_I0174 - lipopolysaccharide biosynthesis protein RffA 158 35.48 -1 216890..217729 - 279 209693792 wavT VSAL_I0176 - putative glycosyl transferase 159 39.43 0 217730..218287 - 185 209693793 rmlC VSAL_I0177 - dTDP-4-dehydrorhamnose 3,5-epimerase 160 38.42 0 219197..220081 - 294 209693794 rmlA VSAL_I0179 - glucose-1-phosphate thymidylyltransferase RmlA 161 39.93 0 220081..221172 - 363 209693795 rmlB VSAL_I0180 - dTDP-D-glucose-4,6-dehydratase 162 38.19 0 221194..223047 - 617 209693796 - VSAL_I0181 - membrane associated sulfatase 163 36.74 0 223080..223784 - 234 209693797 wavC VSAL_I0182 - lipopolysaccharide core oligosaccharide biosynthesis protein WavC 164 40.71 0 224160..225230 + 356 209693798 - VSAL_I0183 - glycosyl transferase 165 38.06 0 225230..226012 + 260 209693799 waaE VSAL_I0184 - glycosyl transferase 166 41.76 0 226012..227043 + 343 209693800 - VSAL_I0185 - glycosyl tranferase 167 41.10 0 227036..227524 + 162 209693801 coaD VSAL_I0186 - phosphopantetheine adenylyltransferase 168 38.69 0 227568..229547 - 659 209693802 - VSAL_I0187 - membrane protein 169 41.51 0 229584..230402 - 272 209693803 mutM VSAL_I0188 - formamidopyrimidine-DNA glycosylase 170 41.61 0 230590..231048 - 152 209693804 - VSAL_I0189 - hypothetical protein 171 38.10 0 231313..231480 - 55 209693805 rpmG VSAL_I0190 - 50S ribosomal protein L33 172 45.99 +2 231494..231730 - 78 209693806 rpmB VSAL_I0191 - 50S ribosomal protein L28 173 42.96 +1 231926..232600 - 224 209693807 radC VSAL_I0192 - DNA repair protein RadC 174 46.76 +2 232816..234036 + 406 209693808 coaBC VSAL_I0193 - coenzyme A biosynthesis bifunctional protein CoaBC 175 38.24 0 234260..234850 + 196 209693809 slmA VSAL_I0194 - HTH-type regulatory protein, TetR-family 176 43.21 +1 234906..235847 + 313 209693810 htrB VSAL_I0195 - lipid A biosynthesis lauroyl acyltransferase 177 44.02 +1 235883..236350 + 155 209693811 greB VSAL_I0196 - transcription elongation factor GreB 178 44.24 +1 236541..238877 + 778 209693812 - VSAL_I0197 - putative RNA binding protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0