IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1166	 37.56	0	1368340..1369143	-	267	209694800	-	VSAL_I1259	-	HTH-type transcription regulator, RpiR family
1167	 43.85	+1	1369405..1370307	+	300	209694801	-	VSAL_I1260	-	hypothetical protein
1168	 41.30	0	1371318..1371857	+	179	209694802	-	VSAL_I1262	-	hypothetical protein
1169	 40.60	0	1371953..1372681	+	242	209694803	-	VSAL_I1263	-	membrane protein
1170	 41.17	0	1372689..1373696	-	335	209694804	-	VSAL_I1264	-	HTH-type transcriptional regulator, LysR-family
1171	 37.78	0	1373986..1374300	+	104	209694805	-	VSAL_I1266	-	transposase
1172	 37.39	0	1376340..1377029	-	229	209694806	-	VSAL_I1269	-	hypothetical protein
1173	 41.64	0	1377116..1379269	-	717	209694807	-	VSAL_I1270	-	ribonucleotide reductase
1174	 38.44	0	1379624..1380955	+	443	209694808	-	VSAL_I1271	-	putative response regulator
1175	 37.46	0	1381019..1381696	-	225	209694809	sanA	VSAL_I1272	-	vancomycin resistance protein SanA
1176	 40.84	0	1381724..1382056	-	110	209694810	-	VSAL_I1273	-	membrane protein
1177	 41.98	0	1382175..1383863	-	562	209694811	sfcA	VSAL_I1274	-	NAD-dependent malic enzyme
1178	 35.94	-1	1385664..1386545	+	293	209694812	-	VSAL_I1276	-	transposase
1179	 37.78	0	1387430..1387744	+	104	209694813	-	VSAL_I1278	-	transposase
1180	 36.21	-1	1387741..1388088	+	115	209694814	-	VSAL_I1279	-	transposase
1181	 39.78	0	1388160..1389647	+	495	209694815	-	VSAL_I1280	-	transposase
1182	 42.84	+1	1390096..1391400	-	434	209694816	-	VSAL_I1281	-	sodium/dicarboxylate symporter
1183	 43.36	+1	1392050..1393654	+	534	209694817	-	VSAL_I1282	-	transporter, BCCT family
1184	 33.01	-2	1393885..1394196	+	103	209694818	-	VSAL_I1283	-	hypothetical protein
1185	 35.45	-1	1394217..1394594	+	125	209694819	-	VSAL_I1284	-	hypothetical protein
1186	 37.89	0	1395025..1396188	+	387	209694820	-	VSAL_I1285	-	hypothetical protein
1187	 43.09	+1	1396332..1397294	-	320	209694821	-	VSAL_I1286	-	hypothetical protein
1188	 41.83	0	1397327..1397785	-	152	209694822	-	VSAL_I1287	-	putative RNA methyltransferase
1189	 43.25	+1	1397881..1398354	+	157	209694823	-	VSAL_I1288	-	hypothetical protein
1190	 38.93	0	1398517..1399893	+	458	209694824	-	VSAL_I1289	-	alkaline-resistant alpha-amylase precursor
1191	 37.78	0	1400496..1400810	+	104	209694825	-	VSAL_I1291	-	transposase
1192	 36.21	-1	1400807..1401154	+	115	209694826	-	VSAL_I1292	-	transposase
1193	 39.65	0	1401226..1402713	+	495	209694827	-	VSAL_I1293	-	transposase
1194	 40.46	0	1403518..1405509	-	663	209694828	-	VSAL_I1294	-	methyl-accepting chemotaxis protein
1195	 42.45	0	1405807..1406157	+	116	209694829	-	VSAL_I1295	-	HIT family protein
1196	 39.91	0	1406225..1407622	+	465	209694830	-	VSAL_I1296	-	putative lipoprotein
1197	 40.77	0	1407622..1408011	+	129	209694831	-	VSAL_I1297	-	putative lipoprotein
1198	 37.39	0	1408058..1408648	+	196	209694832	-	VSAL_I1298	-	putative lipoprotein
1199	 38.79	0	1408863..1412438	+	1191	209694833	-	VSAL_I1299	-	hypothetical protein
1200	 33.45	-1	1412441..1413328	+	295	209694834	-	VSAL_I1300	-	hypothetical protein
1201	 34.81	-1	1413481..1413819	+	112	209694835	-	VSAL_I1301	-	hypothetical protein
1202	 38.58	0	1413903..1414646	-	247	209694836	-	VSAL_I1302	-	hypothetical protein
1203	 37.04	0	1414909..1415691	-	260	209694837	-	VSAL_I1303	-	membrane protein
1204	 38.91	0	1415702..1416598	-	298	209694838	-	VSAL_I1304	-	6-phosphogluconate dehydrogenase
1205	 34.60	-1	1416608..1417630	-	340	209694839	-	VSAL_I1305	-	hypothetical protein
1206	 36.32	-1	1417791..1419131	+	446	209694840	-	VSAL_I1306	-	putative HTH-type trancriptional regulator, GntR family
1207	 38.15	0	1419148..1419978	+	276	209694841	-	VSAL_I1307	-	putative antibiotic resistance protein
1208	 33.33	-1	1419991..1420344	-	117	209694842	-	VSAL_I1308	-	transposase
1209	 35.70	-1	1420574..1420996	-	140	209694843	-	VSAL_I1309	-	transposase
1210	 39.13	0	1421218..1421769	+	183	209694844	-	VSAL_I1310	-	hypothetical protein
1211	 40.47	0	1422124..1423413	+	429	209694845	ndh	VSAL_I1311	-	NADH dehydrogenase
1212	 40.08	0	1423587..1424891	+	434	209694846	-	VSAL_I1312	-	putative helicase (DEAD/DEAH box helicase)
1213	 41.16	0	1424901..1425347	+	148	209694847	-	VSAL_I1313	-	hypothetical protein
1214	 37.78	0	1425529..1425843	+	104	209694848	-	VSAL_I1314	-	transposase
1215	 39.89	0	1429491..1430207	-	238	209694849	-	VSAL_I1318	-	transcriptional regulator, two-component response regulator
1216	 38.21	0	1430200..1431882	-	560	209694850	-	VSAL_I1319	-	membrane receptor, histidine kinase
1217	 41.67	0	1432162..1432713	+	183	209694851	-	VSAL_I1320	-	membrane protein
1218	 36.42	0	1432803..1432964	-	53	209694852	-	VSAL_I1321	-	hypothetical protein
1219	 41.21	0	1433272..1434147	+	291	209694853	-	VSAL_I1322	-	heat shock protein HtpX, membrane associated peptidase
1220	 35.96	-1	1434291..1434785	+	164	209694854	-	VSAL_I1323	-	hypothetical protein
1221	 38.01	0	1434877..1435389	-	170	209694855	-	VSAL_I1324	-	hypothetical protein
1222	 41.51	0	1435503..1436786	-	427	209694856	-	VSAL_I1325	-	proton glutamate symport protein
1223	 39.50	0	1437217..1438626	+	469	209694857	-	VSAL_I1326	-	putative amidohydrolase
1224	 34.44	-1	1438827..1440365	+	512	209694858	-	VSAL_I1327	-	hypothetical protein
1225	 38.22	0	1440531..1441082	+	183	209694859	-	VSAL_I1328	-	putative membrane associated peptidase
1226	 44.61	+1	1441205..1442605	-	466	209694860	asnS	VSAL_I1329	-	asparaginyl-tRNA synthetase
1227	 39.39	0	1442862..1443224	+	120	209694861	-	VSAL_I1330	-	6-pyruvoyl tetrahydrobiopterin synthase
1228	 40.31	0	1443279..1444295	-	338	209694862	-	VSAL_I1331	-	hypothetical protein
1229	 41.61	0	1444489..1445733	+	414	209694863	sbcD	VSAL_I1332	-	nuclease sbcCD subunit D
1230	 39.85	0	1445730..1449410	+	1226	209694864	sbcC	VSAL_I1333	-	nuclease sbcCD subunit C
1231	 39.71	0	1449467..1449952	+	161	209694865	-	VSAL_I1334	-	putative thioesterase
1232	 40.54	0	1450389..1451582	-	397	209694866	-	VSAL_I1335	-	transposase
1233	 39.83	0	1452557..1453711	+	384	209694867	-	VSAL_I1337	-	tyrosine-specific transport protein (tyrosine permease)
1234	 35.94	-1	1455044..1455925	+	293	209694868	-	VSAL_I1339	-	transposase
1235	 38.61	0	1456036..1456395	+	119	209694869	-	VSAL_I1340	-	putative lipoprotein
1236	 39.44	0	1456444..1456803	+	119	209694870	-	VSAL_I1341	-	putative lipoprotein
1237	 39.59	0	1456867..1457409	-	180	209694871	-	VSAL_I1342	-	hypothetical protein
1238	 42.88	+1	1457621..1458982	-	453	209694872	sdaA	VSAL_I1343	-	L-serine dehydratase 1
1239	 42.05	0	1459080..1460330	-	416	209694873	sdaC	VSAL_I1344	-	serine transporter
1240	 37.27	0	1460522..1461130	-	202	209694874	-	VSAL_I1345	-	NUDIX hydrolase
1241	 39.97	0	1461130..1462500	-	456	209694875	pabB	VSAL_I1346	-	para-aminobenzoate synthase component I
1242	 45.11	+1	1462671..1464215	+	514	209694876	-	VSAL_I1347	-	fumarate hydratase class I
1243	 35.94	-1	1464260..1465141	-	293	209694877	-	VSAL_I1348	-	transposase
1244	 39.14	0	1465291..1466616	-	441	209694878	-	VSAL_I1349	-	transposase
1245	 34.44	-1	1466801..1467163	+	120	209694879	-	VSAL_I1350	-	putative lipoprotein
1246	 40.88	0	1467216..1468289	+	357	209694880	-	VSAL_I1351	-	putative multidrug resistance protein precursor
1247	 40.28	0	1468292..1469371	+	359	209694881	-	VSAL_I1352	-	organic solvent efflux pump precursor (periplasmic linker protein component)
1248	 42.50	0	1469371..1472448	+	1025	209694882	-	VSAL_I1353	-	putative multi-drug efflux protein
1249	 39.79	0	1472721..1473107	+	128	209694883	-	VSAL_I1354	-	hypothetical protein
1250	 44.08	+1	1473236..1474426	-	396	209694884	metC	VSAL_I1355	-	cystathionine beta-lyase
1251	 40.74	0	1474582..1474932	+	116	209694885	-	VSAL_I1356	-	hypothetical protein
1252	 43.55	+1	1475219..1475737	+	172	209694886	hpc	VSAL_I1357	-	secreted protein Hcp-2 (haemolysin co-regulated protein)
1253	 43.31	+1	1475814..1478078	+	754	209694887	-	VSAL_I1358	-	VgrG preotein, VgrG-2
1254	 39.73	0	1478060..1478653	+	197	209694888	-	VSAL_I1359	-	hypothetical protein
1255	 36.21	-1	1482240..1482587	-	115	209694889	-	VSAL_I1362	-	transposase
1256	 37.78	0	1482584..1482898	-	104	209694890	-	VSAL_I1363	-	transposase
1257	 41.23	0	1482981..1485653	-	890	209694891	-	VSAL_I1364	-	putative exported nuclease
1258	 35.94	-1	1485914..1486795	-	293	209694892	-	VSAL_I1365	-	transposase
1259	 40.94	0	1487015..1487869	+	284	209694893	-	VSAL_I1366	-	ATP-dependent DNA ligase
1260	 41.32	0	1487925..1488926	-	333	209694894	rbsR	VSAL_I1367	-	ribose operon repressor
1261	 45.32	+1	1489002..1489919	-	305	209694895	rbsK	VSAL_I1368	-	ribokinase
1262	 45.16	+1	1490100..1490978	-	292	209694896	rbsB	VSAL_I1369	-	D-ribose-binding periplasmic protein precursor RbsB
1263	 43.62	+1	1491115..1492086	-	323	209694897	rbsC	VSAL_I1370	-	ribose transport system permease protein RbsC
1264	 41.06	0	1492098..1493612	-	504	209694898	rbsA	VSAL_I1371	-	ribose transport ATP-binding protein RbsA
1265	 38.57	0	1493673..1494092	-	139	209694899	rbsD	VSAL_I1372	-	high affinity ribose transport protein RbsD
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.