version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1162 40.22 0 1362933..1364456 + 507 209694796 - VSAL_I1254 - transporter, BCCT family 1163 43.18 +1 1364764..1365657 + 297 209694797 dnaJ VSAL_I1255 - chaperone protein DnaJ 1164 37.78 0 1365834..1366148 + 104 209694798 - VSAL_I1256 - transposase 1165 36.21 -1 1366145..1366492 + 115 209694799 - VSAL_I1257 - transposase 1166 37.56 0 1368340..1369143 - 267 209694800 - VSAL_I1259 - HTH-type transcription regulator, RpiR family 1167 43.85 +1 1369405..1370307 + 300 209694801 - VSAL_I1260 - hypothetical protein 1168 41.30 0 1371318..1371857 + 179 209694802 - VSAL_I1262 - hypothetical protein 1169 40.60 0 1371953..1372681 + 242 209694803 - VSAL_I1263 - membrane protein 1170 41.17 0 1372689..1373696 - 335 209694804 - VSAL_I1264 - HTH-type transcriptional regulator, LysR-family 1171 37.78 0 1373986..1374300 + 104 209694805 - VSAL_I1266 - transposase 1172 37.39 0 1376340..1377029 - 229 209694806 - VSAL_I1269 - hypothetical protein 1173 41.64 0 1377116..1379269 - 717 209694807 - VSAL_I1270 - ribonucleotide reductase 1174 38.44 0 1379624..1380955 + 443 209694808 - VSAL_I1271 - putative response regulator 1175 37.46 0 1381019..1381696 - 225 209694809 sanA VSAL_I1272 - vancomycin resistance protein SanA 1176 40.84 0 1381724..1382056 - 110 209694810 - VSAL_I1273 - membrane protein 1177 41.98 0 1382175..1383863 - 562 209694811 sfcA VSAL_I1274 - NAD-dependent malic enzyme 1178 35.94 -1 1385664..1386545 + 293 209694812 - VSAL_I1276 - transposase 1179 37.78 0 1387430..1387744 + 104 209694813 - VSAL_I1278 - transposase 1180 36.21 -1 1387741..1388088 + 115 209694814 - VSAL_I1279 - transposase 1181 39.78 0 1388160..1389647 + 495 209694815 - VSAL_I1280 - transposase 1182 42.84 +1 1390096..1391400 - 434 209694816 - VSAL_I1281 - sodium/dicarboxylate symporter 1183 43.36 +1 1392050..1393654 + 534 209694817 - VSAL_I1282 - transporter, BCCT family 1184 33.01 -2 1393885..1394196 + 103 209694818 - VSAL_I1283 - hypothetical protein 1185 35.45 -1 1394217..1394594 + 125 209694819 - VSAL_I1284 - hypothetical protein 1186 37.89 0 1395025..1396188 + 387 209694820 - VSAL_I1285 - hypothetical protein 1187 43.09 +1 1396332..1397294 - 320 209694821 - VSAL_I1286 - hypothetical protein 1188 41.83 0 1397327..1397785 - 152 209694822 - VSAL_I1287 - putative RNA methyltransferase 1189 43.25 +1 1397881..1398354 + 157 209694823 - VSAL_I1288 - hypothetical protein 1190 38.93 0 1398517..1399893 + 458 209694824 - VSAL_I1289 - alkaline-resistant alpha-amylase precursor 1191 37.78 0 1400496..1400810 + 104 209694825 - VSAL_I1291 - transposase 1192 36.21 -1 1400807..1401154 + 115 209694826 - VSAL_I1292 - transposase 1193 39.65 0 1401226..1402713 + 495 209694827 - VSAL_I1293 - transposase 1194 40.46 0 1403518..1405509 - 663 209694828 - VSAL_I1294 - methyl-accepting chemotaxis protein 1195 42.45 0 1405807..1406157 + 116 209694829 - VSAL_I1295 - HIT family protein 1196 39.91 0 1406225..1407622 + 465 209694830 - VSAL_I1296 - putative lipoprotein 1197 40.77 0 1407622..1408011 + 129 209694831 - VSAL_I1297 - putative lipoprotein 1198 37.39 0 1408058..1408648 + 196 209694832 - VSAL_I1298 - putative lipoprotein 1199 38.79 0 1408863..1412438 + 1191 209694833 - VSAL_I1299 - hypothetical protein 1200 33.45 -1 1412441..1413328 + 295 209694834 - VSAL_I1300 - hypothetical protein 1201 34.81 -1 1413481..1413819 + 112 209694835 - VSAL_I1301 - hypothetical protein 1202 38.58 0 1413903..1414646 - 247 209694836 - VSAL_I1302 - hypothetical protein 1203 37.04 0 1414909..1415691 - 260 209694837 - VSAL_I1303 - membrane protein 1204 38.91 0 1415702..1416598 - 298 209694838 - VSAL_I1304 - 6-phosphogluconate dehydrogenase 1205 34.60 -1 1416608..1417630 - 340 209694839 - VSAL_I1305 - hypothetical protein 1206 36.32 -1 1417791..1419131 + 446 209694840 - VSAL_I1306 - putative HTH-type trancriptional regulator, GntR family 1207 38.15 0 1419148..1419978 + 276 209694841 - VSAL_I1307 - putative antibiotic resistance protein 1208 33.33 -1 1419991..1420344 - 117 209694842 - VSAL_I1308 - transposase 1209 35.70 -1 1420574..1420996 - 140 209694843 - VSAL_I1309 - transposase 1210 39.13 0 1421218..1421769 + 183 209694844 - VSAL_I1310 - hypothetical protein 1211 40.47 0 1422124..1423413 + 429 209694845 ndh VSAL_I1311 - NADH dehydrogenase 1212 40.08 0 1423587..1424891 + 434 209694846 - VSAL_I1312 - putative helicase (DEAD/DEAH box helicase) 1213 41.16 0 1424901..1425347 + 148 209694847 - VSAL_I1313 - hypothetical protein 1214 37.78 0 1425529..1425843 + 104 209694848 - VSAL_I1314 - transposase 1215 39.89 0 1429491..1430207 - 238 209694849 - VSAL_I1318 - transcriptional regulator, two-component response regulator 1216 38.21 0 1430200..1431882 - 560 209694850 - VSAL_I1319 - membrane receptor, histidine kinase 1217 41.67 0 1432162..1432713 + 183 209694851 - VSAL_I1320 - membrane protein 1218 36.42 0 1432803..1432964 - 53 209694852 - VSAL_I1321 - hypothetical protein 1219 41.21 0 1433272..1434147 + 291 209694853 - VSAL_I1322 - heat shock protein HtpX, membrane associated peptidase 1220 35.96 -1 1434291..1434785 + 164 209694854 - VSAL_I1323 - hypothetical protein 1221 38.01 0 1434877..1435389 - 170 209694855 - VSAL_I1324 - hypothetical protein 1222 41.51 0 1435503..1436786 - 427 209694856 - VSAL_I1325 - proton glutamate symport protein 1223 39.50 0 1437217..1438626 + 469 209694857 - VSAL_I1326 - putative amidohydrolase 1224 34.44 -1 1438827..1440365 + 512 209694858 - VSAL_I1327 - hypothetical protein 1225 38.22 0 1440531..1441082 + 183 209694859 - VSAL_I1328 - putative membrane associated peptidase 1226 44.61 +1 1441205..1442605 - 466 209694860 asnS VSAL_I1329 - asparaginyl-tRNA synthetase 1227 39.39 0 1442862..1443224 + 120 209694861 - VSAL_I1330 - 6-pyruvoyl tetrahydrobiopterin synthase 1228 40.31 0 1443279..1444295 - 338 209694862 - VSAL_I1331 - hypothetical protein 1229 41.61 0 1444489..1445733 + 414 209694863 sbcD VSAL_I1332 - nuclease sbcCD subunit D 1230 39.85 0 1445730..1449410 + 1226 209694864 sbcC VSAL_I1333 - nuclease sbcCD subunit C 1231 39.71 0 1449467..1449952 + 161 209694865 - VSAL_I1334 - putative thioesterase 1232 40.54 0 1450389..1451582 - 397 209694866 - VSAL_I1335 - transposase 1233 39.83 0 1452557..1453711 + 384 209694867 - VSAL_I1337 - tyrosine-specific transport protein (tyrosine permease) 1234 35.94 -1 1455044..1455925 + 293 209694868 - VSAL_I1339 - transposase 1235 38.61 0 1456036..1456395 + 119 209694869 - VSAL_I1340 - putative lipoprotein 1236 39.44 0 1456444..1456803 + 119 209694870 - VSAL_I1341 - putative lipoprotein 1237 39.59 0 1456867..1457409 - 180 209694871 - VSAL_I1342 - hypothetical protein 1238 42.88 +1 1457621..1458982 - 453 209694872 sdaA VSAL_I1343 - L-serine dehydratase 1 1239 42.05 0 1459080..1460330 - 416 209694873 sdaC VSAL_I1344 - serine transporter 1240 37.27 0 1460522..1461130 - 202 209694874 - VSAL_I1345 - NUDIX hydrolase 1241 39.97 0 1461130..1462500 - 456 209694875 pabB VSAL_I1346 - para-aminobenzoate synthase component I 1242 45.11 +1 1462671..1464215 + 514 209694876 - VSAL_I1347 - fumarate hydratase class I 1243 35.94 -1 1464260..1465141 - 293 209694877 - VSAL_I1348 - transposase 1244 39.14 0 1465291..1466616 - 441 209694878 - VSAL_I1349 - transposase 1245 34.44 -1 1466801..1467163 + 120 209694879 - VSAL_I1350 - putative lipoprotein 1246 40.88 0 1467216..1468289 + 357 209694880 - VSAL_I1351 - putative multidrug resistance protein precursor 1247 40.28 0 1468292..1469371 + 359 209694881 - VSAL_I1352 - organic solvent efflux pump precursor (periplasmic linker protein component) 1248 42.50 0 1469371..1472448 + 1025 209694882 - VSAL_I1353 - putative multi-drug efflux protein 1249 39.79 0 1472721..1473107 + 128 209694883 - VSAL_I1354 - hypothetical protein 1250 44.08 +1 1473236..1474426 - 396 209694884 metC VSAL_I1355 - cystathionine beta-lyase 1251 40.74 0 1474582..1474932 + 116 209694885 - VSAL_I1356 - hypothetical protein 1252 43.55 +1 1475219..1475737 + 172 209694886 hpc VSAL_I1357 - secreted protein Hcp-2 (haemolysin co-regulated protein) 1253 43.31 +1 1475814..1478078 + 754 209694887 - VSAL_I1358 - VgrG preotein, VgrG-2 1254 39.73 0 1478060..1478653 + 197 209694888 - VSAL_I1359 - hypothetical protein 1255 36.21 -1 1482240..1482587 - 115 209694889 - VSAL_I1362 - transposase 1256 37.78 0 1482584..1482898 - 104 209694890 - VSAL_I1363 - transposase 1257 41.23 0 1482981..1485653 - 890 209694891 - VSAL_I1364 - putative exported nuclease 1258 35.94 -1 1485914..1486795 - 293 209694892 - VSAL_I1365 - transposase 1259 40.94 0 1487015..1487869 + 284 209694893 - VSAL_I1366 - ATP-dependent DNA ligase 1260 41.32 0 1487925..1488926 - 333 209694894 rbsR VSAL_I1367 - ribose operon repressor 1261 45.32 +1 1489002..1489919 - 305 209694895 rbsK VSAL_I1368 - ribokinase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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