version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1039 34.98 -1 1224260..1224685 - 141 209694673 vasS VSAL_I1122 - putative type VI secretion protein VasS 1040 39.30 0 1224773..1226248 - 491 209694674 vasR VSAL_I1123 - putative type VI secretion protein VasR 1041 37.78 0 1226252..1226746 - 164 209694675 vasQ VSAL_I1124 - putative type VI secretion protein VasQ 1042 32.23 -2 1226761..1228302 - 513 209694676 vasJ VSAL_I1125 - putative type VI secretion protein VasJ 1043 27.62 -2 1228554..1228763 - 69 209694677 - VSAL_I1126 - hypothetical protein 1044 40.29 0 1228750..1229310 - 186 209694678 - VSAL_I1127 - primosomal replication protein N'' 1045 41.63 0 1229341..1230111 - 256 209694679 - VSAL_I1128 - membrane protein 1046 38.66 0 1230178..1232262 - 694 209694680 - VSAL_I1129 - probable ATP-dependent DNA helicase DinG 1047 30.45 -2 1233860..1234483 + 207 209694681 - VSAL_I1131 - hypothetical protein 1048 40.94 0 1234971..1235969 + 332 209694682 - VSAL_I1132 - putative outer membrane protein 1049 41.58 0 1236478..1237374 + 298 209694683 hisG VSAL_I1133 - ATP phosphoribosyltransferase 1050 42.21 0 1237380..1238675 + 431 209694684 hisD VSAL_I1134 - histidinol dehydrogenase 1051 40.06 0 1238690..1239730 + 346 209694685 hisC VSAL_I1135 - histidinol-phosphate aminotransferase 1052 41.62 0 1239808..1240881 + 357 209694686 hisB VSAL_I1136 - histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase] 1053 41.63 0 1240890..1241504 + 204 209694687 hisH VSAL_I1137 - imidazole glycerol phosphate synthase subunit HisH (imidazole glycerol synthase glutamine amidotransferase subunit) 1054 44.85 +1 1241619..1242356 + 245 209694688 hisA VSAL_I1138 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase (phosphoribosylformimino-5-aminoimidazole carboxamide ribotid isomerase) 1055 42.51 0 1242338..1243111 + 257 209694689 hisF VSAL_I1139 - imidazole glycerol phosphate synthase subunit HisF 1056 41.55 0 1243108..1243728 + 206 209694690 hisI VSAL_I1140 - histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase] 1057 34.35 -1 1243866..1244357 + 163 209694691 - VSAL_I1141 - V10 pilin 1058 39.16 0 1244482..1245168 + 228 209694692 - VSAL_I1142 - RNA psedouridine synthase 1059 40.99 0 1245165..1246130 + 321 209694693 - VSAL_I1143 - hypothetical protein 1060 36.84 0 1246208..1246606 - 132 209694694 - VSAL_I1144 - putative lipoprotein 1061 41.91 0 1246625..1246927 - 100 209694695 - VSAL_I1145 - hypothetical protein 1062 40.66 0 1247050..1247472 - 140 209694696 yciA VSAL_I1146 - acyl-CoA thioester hydrolase (p14 protein) 1063 33.52 -1 1247571..1248116 - 181 209694697 ispZ VSAL_I1147 - probable intracellular septation protein 1064 41.02 0 1249890..1250696 - 268 209694698 trpA VSAL_I1149 - tryptophan synthase alpha chain 1065 44.75 +1 1250696..1251886 - 396 209694699 trpB VSAL_I1150 - tryptophan synthase beta chain 1 1066 39.63 0 1251897..1253309 - 470 209694700 trpC VSAL_I1151 - tryptophan biosynthesis protein TrpCF 1067 42.36 0 1253315..1254322 - 335 209694701 trpD VSAL_I1152 - anthranilate phosphoribosyltransferase 1068 41.87 0 1254333..1254941 - 202 209694702 trpG VSAL_I1153 - anthranilate synthase component II 1069 40.42 0 1254941..1256578 - 545 209694703 trpE VSAL_I1154 - anthranilate synthase component I 1070 42.91 +1 1256941..1257786 + 281 209694704 - VSAL_I1155 - hypothetical protein 1071 41.22 0 1257859..1258479 + 206 209694705 - VSAL_I1156 - hypothetical protein 1072 32.52 -2 1258540..1261008 - 822 209694706 ainR VSAL_I1157 - autoinducer regulatory protein AinR 1073 33.08 -2 1261020..1262210 - 396 209694707 ainS VSAL_I1158 - autoinducer synthase 1074 42.44 0 1262544..1263608 + 354 209694708 rluB VSAL_I1159 - ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B) 1075 40.76 0 1263713..1264453 - 246 209694709 - VSAL_I1160 - putative NAD-or NADP-dependent oxidoreductase 1076 40.96 0 1264620..1265681 + 353 209694710 sohB VSAL_I1161 - probable protease SohB 1077 33.74 -1 1265754..1265999 - 81 209694711 - VSAL_I1162 - hypothetical protein 1078 35.66 -1 1266064..1266192 + 42 209694712 - VSAL_I1163 - hypothetical protein 1079 42.99 +1 1266401..1269040 + 879 209694713 topA VSAL_I1164 - DNA topoisomerase I (omega protein) 1080 40.62 0 1270324..1271517 - 397 209694714 - VSAL_I1166 - transposase 1081 43.43 +1 1272188..1272484 + 98 209694715 vasV-1 VSAL_I1168 - putative type VI secretion protein VasV-1, PAAR domain protein 1082 36.87 0 1272880..1274265 + 461 209694716 vasJ-1 VSAL_I1169 - putative type VI secretion protein VasJ-1 1083 40.20 0 1274426..1274818 + 130 209694717 hcp-3 VSAL_I1170 - hemolysin-coregulated protein Hcp-3 1084 35.29 -1 1274890..1275399 + 169 209694718 vasQ-1 VSAL_I1171 - putative type VI secretion protein VasQ-1 1085 41.09 0 1275399..1276880 + 493 209694719 vasRA-1 VSAL_I1172 - putative type VI secretion protein VasRA-1 1086 36.42 0 1276930..1278291 + 453 209694720 vasRB-1 VSAL_I1173 - putative type VI secretion protein VasRB-1 1087 35.46 -1 1278288..1278710 + 140 209694721 vasS-1 VSAL_I1174 - putative type VI secretion protein VasS-1 1088 35.07 -1 1278703..1280484 + 593 209694722 vasA-1 VSAL_I1175 - putative type VI secretion protein VasA-1 1089 36.79 0 1280466..1281449 + 327 209694723 vasB-1 VSAL_I1176 - putative type VI secretion protein VasB-1 1090 39.52 0 1281456..1284074 + 872 209694724 vasG-1 VSAL_I1177 - chaperone ClpB-1 1091 31.45 -2 1284155..1284313 + 52 209694725 vasV-1 VSAL_I1178 - putative type VI secretion protein VasV-1 1092 35.45 -1 1284376..1285320 + 314 209694726 vasC-1 VSAL_I1179 - putative type VI secretion protein VasC-1 1093 34.41 -1 1285317..1285781 + 154 209694727 vasD-1 VSAL_I1180 - putative type VI secretion protein VasD-1 1094 37.97 0 1285784..1287100 + 438 209694728 vasE-1 VSAL_I1181 - putative type VI secretion protein VasE-1 1095 35.38 -1 1287108..1288232 + 374 209694729 vasF-1 VSAL_I1182 - putative type VI secretion protein VasF-1 1096 39.30 0 1290747..1292054 + 435 209694730 - VSAL_I1184 - transposase 1097 32.69 -2 1293110..1293727 + 205 209694731 vasX-1 VSAL_I1185 - putative type VI secretion protein VasX-1 1098 40.25 0 1293881..1294516 - 211 209694732 - VSAL_I1186 - putative lysine exporter protein 1099 40.26 0 1294730..1295566 + 278 209694733 - VSAL_I1187 - transcriptional regulator, AraC-family 1100 42.58 +1 1295639..1296352 + 237 209694734 - VSAL_I1188 - putative branched-chain amino acid transport protein 1101 38.94 0 1296349..1296669 + 106 209694735 - VSAL_I1189 - putative branched-chain amino acid transport protein 1102 39.51 0 1296672..1297286 - 204 209694736 - VSAL_I1190 - putative fumarylacetoacetate hydrolase 1103 37.51 0 1297498..1298334 + 278 209694737 - VSAL_I1191 - HTH-type transcriptional regulator, AraC family 1104 39.48 0 1298406..1299218 - 270 209694738 - VSAL_I1192 - putative acetyltransferase 1105 40.65 0 1299497..1300726 + 409 209694739 - VSAL_I1193 - zinc metallopeptidase 1106 41.83 0 1300729..1302093 + 454 209694740 dcuC VSAL_I1194 - anaerobic C4-dicarboxylate transporter DcuC 1107 44.15 +1 1302210..1303466 - 418 209694741 - VSAL_I1195 - adenylosuccinate synthetase 1108 39.69 0 1303596..1304492 + 298 209694742 - VSAL_I1196 - HTH-type transcriptional regulator, LysR family 1109 42.51 0 1304769..1306163 + 464 209694743 gadB VSAL_I1197 - glutamate decarboxylase beta 1110 42.44 0 1306260..1308137 + 625 209694744 - VSAL_I1198 - probable membrane permease 1111 40.64 0 1308200..1309102 - 300 209694745 - VSAL_I1199 - HTH-type transcriptional regulator, LysR-family 1112 43.19 +1 1309250..1310101 + 283 209694746 - VSAL_I1200 - putative pirin 1113 43.11 +1 1310164..1311135 + 323 209694747 - VSAL_I1201 - putative IMP dehydrogenase/GMP reductase 1114 43.30 +1 1311319..1311840 + 173 209694748 hcp VSAL_I1202 - secreted protein Hcp-1 (haemolysin co-regulated protein) 1115 32.39 -2 1311948..1312160 - 70 209694749 - VSAL_I1203 - hypothetical protein 1116 38.45 0 1312374..1314290 + 638 209694750 - VSAL_I1204 - putative phospholipase 1117 39.78 0 1314395..1315882 - 495 209694751 - VSAL_I1205 - transposase 1118 36.21 -1 1315953..1316300 - 115 209694752 - VSAL_I1206 - transposase 1119 37.78 0 1316297..1316611 - 104 209694753 - VSAL_I1207 - transposase 1120 36.05 -1 1317707..1318588 - 293 209694754 - VSAL_I1209 - transposase 1121 40.26 0 1318900..1319895 + 331 209694755 - VSAL_I1210 - putative NADP or NAD utilising oxidoreductase 1122 36.96 0 1319907..1321394 + 495 209694756 - VSAL_I1211 - putative extracellular solute-binding protein 1123 36.42 0 1321384..1322226 - 280 209694757 - VSAL_I1212 - transcriptional regulator, AraC-family 1124 38.81 0 1322229..1322831 - 200 209694758 - VSAL_I1213 - transporter, LysE family 1125 38.02 0 1323029..1323775 + 248 209694759 - VSAL_I1214 - putative mobile metallo-beta-lactamase 1126 32.60 -2 1323927..1324475 + 182 209694760 - VSAL_I1215 - membrane protein 1127 39.04 0 1324485..1324712 + 75 209694761 - VSAL_I1216 - putative HTH-type transcriptional regulator 1128 34.29 -1 1324786..1325310 - 174 209694762 - VSAL_I1217 - hypothetical protein 1129 35.94 -1 1325459..1326340 + 293 209694763 - VSAL_I1218 - transposase 1130 42.88 +1 1326995..1328293 + 432 209694764 braB VSAL_I1220 - branched chain amino acid transport system II carrier protein 1131 38.01 0 1328569..1329081 + 170 209694765 - VSAL_I1221 - membrane protein 1132 40.88 0 1329187..1331943 - 918 209694766 - VSAL_I1222 - outer membrane protein 1133 40.44 0 1332155..1332745 - 196 209694767 - VSAL_I1223 - outer membrane protein A precursor 1134 37.73 0 1333119..1334027 + 302 209694768 - VSAL_I1224 - hypothetical protein 1135 33.13 -2 1334018..1334500 + 160 209694769 - VSAL_I1225 - hypothetical protein 1136 37.50 0 1334541..1334876 - 111 209694770 - VSAL_I1226 - hypothetical protein 1137 41.70 0 1335288..1336601 + 437 209694771 dcuB VSAL_I1227 - anaerobic C4-dicarboxylate transporter 1138 41.64 0 1336870..1338675 + 601 209694772 - VSAL_I1228 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.