IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1015	 40.91	0	1185629..1186975	-	448	209694649	-	VSAL_I1091	-	deoxyguanosinetriphosphate triphosphohydrolase
1016	 39.71	0	1187116..1188543	+	475	209694650	calB	VSAL_I1092	-	coniferyl aldehyde dehydrogenase
1017	 42.37	0	1188622..1189506	+	294	209694651	-	VSAL_I1093	-	integral membrane protein
1018	 42.38	0	1189612..1190760	-	382	209694652	-	VSAL_I1094	-	iron-containing alcohol dehydrogenase
1019	 41.02	0	1190957..1191841	+	294	209694653	-	VSAL_I1095	-	transcriptional regulator, AraC-family
1020	 36.52	0	1191884..1192417	+	177	209694654	-	VSAL_I1096	-	hypothetical protein
1021	 40.99	0	1192485..1193699	-	404	209694655	-	VSAL_I1097	-	aminotransferase
1022	 40.59	0	1194026..1195348	+	440	209694656	menF	VSAL_I1098	-	menaquinone-specific isochorismate synthase
1023	 41.52	0	1195345..1197078	+	577	209694657	menD	VSAL_I1099	-	menaquinone biosynthesis protein MenD
1024	 41.38	0	1197062..1197856	+	264	209694658	-	VSAL_I1100	-	acyl-CoA thioester hydrolase
1025	 44.64	+1	1197861..1198727	+	288	209694659	menB	VSAL_I1101	-	naphthoate synthase
1026	 41.64	0	1198806..1199780	+	324	209694660	menC	VSAL_I1102	-	O-succinylbenzoate-CoA synthase
1027	 42.20	0	1199768..1201165	+	465	209694661	menE	VSAL_I1103	-	2-succinylbenzoate--CoA ligase (O-succinylbenzoyl-CoA synthetase)
1028	 37.78	0	1201850..1202164	+	104	209694662	-	VSAL_I1105	-	transposase
1029	 34.53	-1	1206727..1207227	-	166	209694663	-	VSAL_I1109	-	hypothetical protein
1030	 36.53	0	1207732..1208481	+	249	209694664	-	VSAL_I1110	-	hypothetical protein
1031	 39.76	0	1209043..1209696	-	217	209694665	vasL	VSAL_I1112	-	serine/threonine phosphoprotein phosphatase
1032	 39.25	0	1213243..1214070	-	275	209694666	vasF	VSAL_I1114	-	putative type VI secretion protein VasF
1033	 38.78	0	1214072..1215394	-	440	209694667	vasE	VSAL_I1115	-	putative type VI secretion protein VasE
1034	 37.83	0	1215406..1215894	-	162	209694668	vasD	VSAL_I1116	-	putative type VI secretion protein VasD
1035	 39.13	0	1215928..1217289	-	453	209694669	vasC	VSAL_I1117	-	putative type VI secretion protein VasC
1036	 39.82	0	1218905..1221523	-	872	209694670	vasG	VSAL_I1119	-	chaperone ClpB
1037	 38.92	0	1221520..1222449	-	309	209694671	vasG	VSAL_I1120	-	putative type VI secretion protein VasG
1038	 37.39	0	1222512..1224263	-	583	209694672	vasA	VSAL_I1121	-	putative type VI secretion protein VasA
1039	 34.98	-1	1224260..1224685	-	141	209694673	vasS	VSAL_I1122	-	putative type VI secretion protein VasS
1040	 39.30	0	1224773..1226248	-	491	209694674	vasR	VSAL_I1123	-	putative type VI secretion protein VasR
1041	 37.78	0	1226252..1226746	-	164	209694675	vasQ	VSAL_I1124	-	putative type VI secretion protein VasQ
1042	 32.23	-2	1226761..1228302	-	513	209694676	vasJ	VSAL_I1125	-	putative type VI secretion protein VasJ
1043	 27.62	-2	1228554..1228763	-	69	209694677	-	VSAL_I1126	-	hypothetical protein
1044	 40.29	0	1228750..1229310	-	186	209694678	-	VSAL_I1127	-	primosomal replication protein N''
1045	 41.63	0	1229341..1230111	-	256	209694679	-	VSAL_I1128	-	membrane protein
1046	 38.66	0	1230178..1232262	-	694	209694680	-	VSAL_I1129	-	probable ATP-dependent DNA helicase DinG
1047	 30.45	-2	1233860..1234483	+	207	209694681	-	VSAL_I1131	-	hypothetical protein
1048	 40.94	0	1234971..1235969	+	332	209694682	-	VSAL_I1132	-	putative outer membrane protein
1049	 41.58	0	1236478..1237374	+	298	209694683	hisG	VSAL_I1133	-	ATP phosphoribosyltransferase
1050	 42.21	0	1237380..1238675	+	431	209694684	hisD	VSAL_I1134	-	histidinol dehydrogenase
1051	 40.06	0	1238690..1239730	+	346	209694685	hisC	VSAL_I1135	-	histidinol-phosphate aminotransferase
1052	 41.62	0	1239808..1240881	+	357	209694686	hisB	VSAL_I1136	-	histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase]
1053	 41.63	0	1240890..1241504	+	204	209694687	hisH	VSAL_I1137	-	imidazole glycerol phosphate synthase subunit HisH (imidazole glycerol synthase glutamine amidotransferase subunit)
1054	 44.85	+1	1241619..1242356	+	245	209694688	hisA	VSAL_I1138	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase (phosphoribosylformimino-5-aminoimidazole carboxamide ribotid isomerase)
1055	 42.51	0	1242338..1243111	+	257	209694689	hisF	VSAL_I1139	-	imidazole glycerol phosphate synthase subunit HisF
1056	 41.55	0	1243108..1243728	+	206	209694690	hisI	VSAL_I1140	-	histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]
1057	 34.35	-1	1243866..1244357	+	163	209694691	-	VSAL_I1141	-	V10 pilin
1058	 39.16	0	1244482..1245168	+	228	209694692	-	VSAL_I1142	-	RNA psedouridine synthase
1059	 40.99	0	1245165..1246130	+	321	209694693	-	VSAL_I1143	-	hypothetical protein
1060	 36.84	0	1246208..1246606	-	132	209694694	-	VSAL_I1144	-	putative lipoprotein
1061	 41.91	0	1246625..1246927	-	100	209694695	-	VSAL_I1145	-	hypothetical protein
1062	 40.66	0	1247050..1247472	-	140	209694696	yciA	VSAL_I1146	-	acyl-CoA thioester hydrolase (p14 protein)
1063	 33.52	-1	1247571..1248116	-	181	209694697	ispZ	VSAL_I1147	-	probable intracellular septation protein
1064	 41.02	0	1249890..1250696	-	268	209694698	trpA	VSAL_I1149	-	tryptophan synthase alpha chain
1065	 44.75	+1	1250696..1251886	-	396	209694699	trpB	VSAL_I1150	-	tryptophan synthase beta chain 1
1066	 39.63	0	1251897..1253309	-	470	209694700	trpC	VSAL_I1151	-	tryptophan biosynthesis protein TrpCF
1067	 42.36	0	1253315..1254322	-	335	209694701	trpD	VSAL_I1152	-	anthranilate phosphoribosyltransferase
1068	 41.87	0	1254333..1254941	-	202	209694702	trpG	VSAL_I1153	-	anthranilate synthase component II
1069	 40.42	0	1254941..1256578	-	545	209694703	trpE	VSAL_I1154	-	anthranilate synthase component I
1070	 42.91	+1	1256941..1257786	+	281	209694704	-	VSAL_I1155	-	hypothetical protein
1071	 41.22	0	1257859..1258479	+	206	209694705	-	VSAL_I1156	-	hypothetical protein
1072	 32.52	-2	1258540..1261008	-	822	209694706	ainR	VSAL_I1157	-	autoinducer regulatory protein AinR
1073	 33.08	-2	1261020..1262210	-	396	209694707	ainS	VSAL_I1158	-	autoinducer synthase
1074	 42.44	0	1262544..1263608	+	354	209694708	rluB	VSAL_I1159	-	ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B)
1075	 40.76	0	1263713..1264453	-	246	209694709	-	VSAL_I1160	-	putative NAD-or NADP-dependent oxidoreductase
1076	 40.96	0	1264620..1265681	+	353	209694710	sohB	VSAL_I1161	-	probable protease SohB
1077	 33.74	-1	1265754..1265999	-	81	209694711	-	VSAL_I1162	-	hypothetical protein
1078	 35.66	-1	1266064..1266192	+	42	209694712	-	VSAL_I1163	-	hypothetical protein
1079	 42.99	+1	1266401..1269040	+	879	209694713	topA	VSAL_I1164	-	DNA topoisomerase I (omega protein)
1080	 40.62	0	1270324..1271517	-	397	209694714	-	VSAL_I1166	-	transposase
1081	 43.43	+1	1272188..1272484	+	98	209694715	vasV-1	VSAL_I1168	-	putative type VI secretion protein VasV-1, PAAR domain protein
1082	 36.87	0	1272880..1274265	+	461	209694716	vasJ-1	VSAL_I1169	-	putative type VI secretion protein VasJ-1
1083	 40.20	0	1274426..1274818	+	130	209694717	hcp-3	VSAL_I1170	-	hemolysin-coregulated protein Hcp-3
1084	 35.29	-1	1274890..1275399	+	169	209694718	vasQ-1	VSAL_I1171	-	putative type VI secretion protein VasQ-1
1085	 41.09	0	1275399..1276880	+	493	209694719	vasRA-1	VSAL_I1172	-	putative type VI secretion protein VasRA-1
1086	 36.42	0	1276930..1278291	+	453	209694720	vasRB-1	VSAL_I1173	-	putative type VI secretion protein VasRB-1
1087	 35.46	-1	1278288..1278710	+	140	209694721	vasS-1	VSAL_I1174	-	putative type VI secretion protein VasS-1
1088	 35.07	-1	1278703..1280484	+	593	209694722	vasA-1	VSAL_I1175	-	putative type VI secretion protein VasA-1
1089	 36.79	0	1280466..1281449	+	327	209694723	vasB-1	VSAL_I1176	-	putative type VI secretion protein VasB-1
1090	 39.52	0	1281456..1284074	+	872	209694724	vasG-1	VSAL_I1177	-	chaperone ClpB-1
1091	 31.45	-2	1284155..1284313	+	52	209694725	vasV-1	VSAL_I1178	-	putative type VI secretion protein VasV-1
1092	 35.45	-1	1284376..1285320	+	314	209694726	vasC-1	VSAL_I1179	-	putative type VI secretion protein VasC-1
1093	 34.41	-1	1285317..1285781	+	154	209694727	vasD-1	VSAL_I1180	-	putative type VI secretion protein VasD-1
1094	 37.97	0	1285784..1287100	+	438	209694728	vasE-1	VSAL_I1181	-	putative type VI secretion protein VasE-1
1095	 35.38	-1	1287108..1288232	+	374	209694729	vasF-1	VSAL_I1182	-	putative type VI secretion protein VasF-1
1096	 39.30	0	1290747..1292054	+	435	209694730	-	VSAL_I1184	-	transposase
1097	 32.69	-2	1293110..1293727	+	205	209694731	vasX-1	VSAL_I1185	-	putative type VI secretion protein VasX-1
1098	 40.25	0	1293881..1294516	-	211	209694732	-	VSAL_I1186	-	putative lysine exporter protein
1099	 40.26	0	1294730..1295566	+	278	209694733	-	VSAL_I1187	-	transcriptional regulator, AraC-family
1100	 42.58	+1	1295639..1296352	+	237	209694734	-	VSAL_I1188	-	putative branched-chain amino acid transport protein
1101	 38.94	0	1296349..1296669	+	106	209694735	-	VSAL_I1189	-	putative branched-chain amino acid transport protein
1102	 39.51	0	1296672..1297286	-	204	209694736	-	VSAL_I1190	-	putative fumarylacetoacetate hydrolase
1103	 37.51	0	1297498..1298334	+	278	209694737	-	VSAL_I1191	-	HTH-type transcriptional regulator, AraC family
1104	 39.48	0	1298406..1299218	-	270	209694738	-	VSAL_I1192	-	putative acetyltransferase
1105	 40.65	0	1299497..1300726	+	409	209694739	-	VSAL_I1193	-	zinc metallopeptidase
1106	 41.83	0	1300729..1302093	+	454	209694740	dcuC	VSAL_I1194	-	anaerobic C4-dicarboxylate transporter DcuC
1107	 44.15	+1	1302210..1303466	-	418	209694741	-	VSAL_I1195	-	adenylosuccinate synthetase
1108	 39.69	0	1303596..1304492	+	298	209694742	-	VSAL_I1196	-	HTH-type transcriptional regulator, LysR family
1109	 42.51	0	1304769..1306163	+	464	209694743	gadB	VSAL_I1197	-	glutamate decarboxylase beta
1110	 42.44	0	1306260..1308137	+	625	209694744	-	VSAL_I1198	-	probable membrane permease
1111	 40.64	0	1308200..1309102	-	300	209694745	-	VSAL_I1199	-	HTH-type transcriptional regulator, LysR-family
1112	 43.19	+1	1309250..1310101	+	283	209694746	-	VSAL_I1200	-	putative pirin
1113	 43.11	+1	1310164..1311135	+	323	209694747	-	VSAL_I1201	-	putative IMP dehydrogenase/GMP reductase
1114	 43.30	+1	1311319..1311840	+	173	209694748	hcp	VSAL_I1202	-	secreted protein Hcp-1 (haemolysin co-regulated protein)
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.