version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1004 40.24 0 1174592..1175083 + 163 209694638 cvpA VSAL_I1079 - colicin V production protein (protein DedE) 1005 41.45 0 1175118..1176632 + 504 209694639 purF VSAL_I1080 - amidophosphoribosyltransferase 1006 38.36 0 1176715..1177590 - 291 209694640 aphB VSAL_I1081 - transcriptional regulator AphB 1007 38.59 0 1177829..1178932 + 367 209694641 - VSAL_I1082 - response regulator 1008 35.62 -1 1178975..1179367 + 130 209694642 - VSAL_I1083 - inner membrane protein 1009 40.66 0 1179452..1179997 + 181 209694643 apt VSAL_I1084 - adenine phosphoribosyltransferase 1010 41.96 0 1180101..1182245 + 714 209694644 dnaX VSAL_I1085 - DNA polymerase III subunit tau 1011 41.96 0 1182334..1182669 + 111 209694645 - VSAL_I1086 - hypothetical protein 1012 46.43 +2 1182772..1183374 + 200 209694646 recR VSAL_I1087 - recombination protein RecR 1013 41.00 0 1183346..1183906 - 186 209694647 - VSAL_I1088 - integral membrane protein 1014 39.79 0 1184217..1185083 - 288 209694648 - VSAL_I1090 - transposase 1015 40.91 0 1185629..1186975 - 448 209694649 - VSAL_I1091 - deoxyguanosinetriphosphate triphosphohydrolase 1016 39.71 0 1187116..1188543 + 475 209694650 calB VSAL_I1092 - coniferyl aldehyde dehydrogenase 1017 42.37 0 1188622..1189506 + 294 209694651 - VSAL_I1093 - integral membrane protein 1018 42.38 0 1189612..1190760 - 382 209694652 - VSAL_I1094 - iron-containing alcohol dehydrogenase 1019 41.02 0 1190957..1191841 + 294 209694653 - VSAL_I1095 - transcriptional regulator, AraC-family 1020 36.52 0 1191884..1192417 + 177 209694654 - VSAL_I1096 - hypothetical protein 1021 40.99 0 1192485..1193699 - 404 209694655 - VSAL_I1097 - aminotransferase 1022 40.59 0 1194026..1195348 + 440 209694656 menF VSAL_I1098 - menaquinone-specific isochorismate synthase 1023 41.52 0 1195345..1197078 + 577 209694657 menD VSAL_I1099 - menaquinone biosynthesis protein MenD 1024 41.38 0 1197062..1197856 + 264 209694658 - VSAL_I1100 - acyl-CoA thioester hydrolase 1025 44.64 +1 1197861..1198727 + 288 209694659 menB VSAL_I1101 - naphthoate synthase 1026 41.64 0 1198806..1199780 + 324 209694660 menC VSAL_I1102 - O-succinylbenzoate-CoA synthase 1027 42.20 0 1199768..1201165 + 465 209694661 menE VSAL_I1103 - 2-succinylbenzoate--CoA ligase (O-succinylbenzoyl-CoA synthetase) 1028 37.78 0 1201850..1202164 + 104 209694662 - VSAL_I1105 - transposase 1029 34.53 -1 1206727..1207227 - 166 209694663 - VSAL_I1109 - hypothetical protein 1030 36.53 0 1207732..1208481 + 249 209694664 - VSAL_I1110 - hypothetical protein 1031 39.76 0 1209043..1209696 - 217 209694665 vasL VSAL_I1112 - serine/threonine phosphoprotein phosphatase 1032 39.25 0 1213243..1214070 - 275 209694666 vasF VSAL_I1114 - putative type VI secretion protein VasF 1033 38.78 0 1214072..1215394 - 440 209694667 vasE VSAL_I1115 - putative type VI secretion protein VasE 1034 37.83 0 1215406..1215894 - 162 209694668 vasD VSAL_I1116 - putative type VI secretion protein VasD 1035 39.13 0 1215928..1217289 - 453 209694669 vasC VSAL_I1117 - putative type VI secretion protein VasC 1036 39.82 0 1218905..1221523 - 872 209694670 vasG VSAL_I1119 - chaperone ClpB 1037 38.92 0 1221520..1222449 - 309 209694671 vasG VSAL_I1120 - putative type VI secretion protein VasG 1038 37.39 0 1222512..1224263 - 583 209694672 vasA VSAL_I1121 - putative type VI secretion protein VasA 1039 34.98 -1 1224260..1224685 - 141 209694673 vasS VSAL_I1122 - putative type VI secretion protein VasS 1040 39.30 0 1224773..1226248 - 491 209694674 vasR VSAL_I1123 - putative type VI secretion protein VasR 1041 37.78 0 1226252..1226746 - 164 209694675 vasQ VSAL_I1124 - putative type VI secretion protein VasQ 1042 32.23 -2 1226761..1228302 - 513 209694676 vasJ VSAL_I1125 - putative type VI secretion protein VasJ 1043 27.62 -2 1228554..1228763 - 69 209694677 - VSAL_I1126 - hypothetical protein 1044 40.29 0 1228750..1229310 - 186 209694678 - VSAL_I1127 - primosomal replication protein N'' 1045 41.63 0 1229341..1230111 - 256 209694679 - VSAL_I1128 - membrane protein 1046 38.66 0 1230178..1232262 - 694 209694680 - VSAL_I1129 - probable ATP-dependent DNA helicase DinG 1047 30.45 -2 1233860..1234483 + 207 209694681 - VSAL_I1131 - hypothetical protein 1048 40.94 0 1234971..1235969 + 332 209694682 - VSAL_I1132 - putative outer membrane protein 1049 41.58 0 1236478..1237374 + 298 209694683 hisG VSAL_I1133 - ATP phosphoribosyltransferase 1050 42.21 0 1237380..1238675 + 431 209694684 hisD VSAL_I1134 - histidinol dehydrogenase 1051 40.06 0 1238690..1239730 + 346 209694685 hisC VSAL_I1135 - histidinol-phosphate aminotransferase 1052 41.62 0 1239808..1240881 + 357 209694686 hisB VSAL_I1136 - histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase] 1053 41.63 0 1240890..1241504 + 204 209694687 hisH VSAL_I1137 - imidazole glycerol phosphate synthase subunit HisH (imidazole glycerol synthase glutamine amidotransferase subunit) 1054 44.85 +1 1241619..1242356 + 245 209694688 hisA VSAL_I1138 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase (phosphoribosylformimino-5-aminoimidazole carboxamide ribotid isomerase) 1055 42.51 0 1242338..1243111 + 257 209694689 hisF VSAL_I1139 - imidazole glycerol phosphate synthase subunit HisF 1056 41.55 0 1243108..1243728 + 206 209694690 hisI VSAL_I1140 - histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase] 1057 34.35 -1 1243866..1244357 + 163 209694691 - VSAL_I1141 - V10 pilin 1058 39.16 0 1244482..1245168 + 228 209694692 - VSAL_I1142 - RNA psedouridine synthase 1059 40.99 0 1245165..1246130 + 321 209694693 - VSAL_I1143 - hypothetical protein 1060 36.84 0 1246208..1246606 - 132 209694694 - VSAL_I1144 - putative lipoprotein 1061 41.91 0 1246625..1246927 - 100 209694695 - VSAL_I1145 - hypothetical protein 1062 40.66 0 1247050..1247472 - 140 209694696 yciA VSAL_I1146 - acyl-CoA thioester hydrolase (p14 protein) 1063 33.52 -1 1247571..1248116 - 181 209694697 ispZ VSAL_I1147 - probable intracellular septation protein 1064 41.02 0 1249890..1250696 - 268 209694698 trpA VSAL_I1149 - tryptophan synthase alpha chain 1065 44.75 +1 1250696..1251886 - 396 209694699 trpB VSAL_I1150 - tryptophan synthase beta chain 1 1066 39.63 0 1251897..1253309 - 470 209694700 trpC VSAL_I1151 - tryptophan biosynthesis protein TrpCF 1067 42.36 0 1253315..1254322 - 335 209694701 trpD VSAL_I1152 - anthranilate phosphoribosyltransferase 1068 41.87 0 1254333..1254941 - 202 209694702 trpG VSAL_I1153 - anthranilate synthase component II 1069 40.42 0 1254941..1256578 - 545 209694703 trpE VSAL_I1154 - anthranilate synthase component I 1070 42.91 +1 1256941..1257786 + 281 209694704 - VSAL_I1155 - hypothetical protein 1071 41.22 0 1257859..1258479 + 206 209694705 - VSAL_I1156 - hypothetical protein 1072 32.52 -2 1258540..1261008 - 822 209694706 ainR VSAL_I1157 - autoinducer regulatory protein AinR 1073 33.08 -2 1261020..1262210 - 396 209694707 ainS VSAL_I1158 - autoinducer synthase 1074 42.44 0 1262544..1263608 + 354 209694708 rluB VSAL_I1159 - ribosomal large subunit pseudouridine synthase B (rRNA pseudouridylate synthase B) 1075 40.76 0 1263713..1264453 - 246 209694709 - VSAL_I1160 - putative NAD-or NADP-dependent oxidoreductase 1076 40.96 0 1264620..1265681 + 353 209694710 sohB VSAL_I1161 - probable protease SohB 1077 33.74 -1 1265754..1265999 - 81 209694711 - VSAL_I1162 - hypothetical protein 1078 35.66 -1 1266064..1266192 + 42 209694712 - VSAL_I1163 - hypothetical protein 1079 42.99 +1 1266401..1269040 + 879 209694713 topA VSAL_I1164 - DNA topoisomerase I (omega protein) 1080 40.62 0 1270324..1271517 - 397 209694714 - VSAL_I1166 - transposase 1081 43.43 +1 1272188..1272484 + 98 209694715 vasV-1 VSAL_I1168 - putative type VI secretion protein VasV-1, PAAR domain protein 1082 36.87 0 1272880..1274265 + 461 209694716 vasJ-1 VSAL_I1169 - putative type VI secretion protein VasJ-1 1083 40.20 0 1274426..1274818 + 130 209694717 hcp-3 VSAL_I1170 - hemolysin-coregulated protein Hcp-3 1084 35.29 -1 1274890..1275399 + 169 209694718 vasQ-1 VSAL_I1171 - putative type VI secretion protein VasQ-1 1085 41.09 0 1275399..1276880 + 493 209694719 vasRA-1 VSAL_I1172 - putative type VI secretion protein VasRA-1 1086 36.42 0 1276930..1278291 + 453 209694720 vasRB-1 VSAL_I1173 - putative type VI secretion protein VasRB-1 1087 35.46 -1 1278288..1278710 + 140 209694721 vasS-1 VSAL_I1174 - putative type VI secretion protein VasS-1 1088 35.07 -1 1278703..1280484 + 593 209694722 vasA-1 VSAL_I1175 - putative type VI secretion protein VasA-1 1089 36.79 0 1280466..1281449 + 327 209694723 vasB-1 VSAL_I1176 - putative type VI secretion protein VasB-1 1090 39.52 0 1281456..1284074 + 872 209694724 vasG-1 VSAL_I1177 - chaperone ClpB-1 1091 31.45 -2 1284155..1284313 + 52 209694725 vasV-1 VSAL_I1178 - putative type VI secretion protein VasV-1 1092 35.45 -1 1284376..1285320 + 314 209694726 vasC-1 VSAL_I1179 - putative type VI secretion protein VasC-1 1093 34.41 -1 1285317..1285781 + 154 209694727 vasD-1 VSAL_I1180 - putative type VI secretion protein VasD-1 1094 37.97 0 1285784..1287100 + 438 209694728 vasE-1 VSAL_I1181 - putative type VI secretion protein VasE-1 1095 35.38 -1 1287108..1288232 + 374 209694729 vasF-1 VSAL_I1182 - putative type VI secretion protein VasF-1 1096 39.30 0 1290747..1292054 + 435 209694730 - VSAL_I1184 - transposase 1097 32.69 -2 1293110..1293727 + 205 209694731 vasX-1 VSAL_I1185 - putative type VI secretion protein VasX-1 1098 40.25 0 1293881..1294516 - 211 209694732 - VSAL_I1186 - putative lysine exporter protein 1099 40.26 0 1294730..1295566 + 278 209694733 - VSAL_I1187 - transcriptional regulator, AraC-family 1100 42.58 +1 1295639..1296352 + 237 209694734 - VSAL_I1188 - putative branched-chain amino acid transport protein 1101 38.94 0 1296349..1296669 + 106 209694735 - VSAL_I1189 - putative branched-chain amino acid transport protein 1102 39.51 0 1296672..1297286 - 204 209694736 - VSAL_I1190 - putative fumarylacetoacetate hydrolase 1103 37.51 0 1297498..1298334 + 278 209694737 - VSAL_I1191 - HTH-type transcriptional regulator, AraC family 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.