IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
962	 45.83	+2	1131216..1131431	+	71	209694596	-	VSAL_I1036	-	probable rRNA transcription initiatior protein,putative phage gene
963	 42.32	0	1131428..1131850	+	140	209694597	-	VSAL_I1037	-	hypothetical protein, putative phage gene
964	 38.21	0	1131853..1132098	+	81	209694598	-	VSAL_I1038	-	hypothetical protein, putative phage gene
965	 40.42	0	1132101..1132340	+	79	209694599	-	VSAL_I1039	-	probable exported protein, putative phage gene
966	 37.50	0	1132337..1132600	+	87	209694600	-	VSAL_I1040	-	hypothetical protein, putative phage gene
967	 45.06	+1	1132788..1134902	+	704	209694601	-	VSAL_I1041	-	probable tail length determinator
968	 41.28	0	1134899..1135225	+	108	209694602	-	VSAL_I1042	-	hypothetical protein, putative phage gene
969	 42.36	0	1135222..1136406	+	394	209694603	-	VSAL_I1043	-	hypothetical protein, putative phage gene
970	 40.95	0	1136399..1136989	+	196	209694604	-	VSAL_I1044	-	hypothetical protein, putative phage gene
971	 43.37	+1	1136992..1139064	+	690	209694605	-	VSAL_I1045	-	tail fiber protein
972	 39.64	0	1139064..1139507	+	147	209694606	-	VSAL_I1046	-	hypothetical protein, putative phage gene
973	 42.84	+1	1139507..1140400	+	297	209694607	-	VSAL_I1047	-	hypothetical protein, putative phage gene
974	 43.17	+1	1140397..1140945	+	182	209694608	-	VSAL_I1048	-	hypothetical protein, putative phage gene
975	 42.56	+1	1140942..1142567	+	541	209694609	-	VSAL_I1049	-	hypothetical protein, putative phage gene
976	 41.41	0	1142569..1142766	+	65	209694610	-	VSAL_I1050	-	hypothetical protein, putative phage gene
977	 35.94	-1	1143101..1143982	+	293	209694611	-	VSAL_I1051	-	transposase
978	 40.67	0	1144549..1144848	+	99	209694612	-	VSAL_I1052	-	hypothetical protein
979	 38.45	0	1145099..1145938	+	279	209694613	-	VSAL_I1053	-	putative 2OG-Fe(II) oxygenase
980	 37.98	0	1146101..1146595	+	164	209694614	-	VSAL_I1054	-	putative acetyltransferase
981	 39.58	0	1146709..1147524	+	271	209694615	-	VSAL_I1055	-	phosphorylase
982	 39.55	0	1147951..1148658	-	235	209694616	cah	VSAL_I1056	-	carbonic anhydrase precursor
983	 38.87	0	1149433..1151238	-	601	209694617	-	VSAL_I1057	-	putative sulfatase
984	 36.84	0	1151258..1151485	-	75	209694618	-	VSAL_I1058	-	hypothetical protein
985	 37.27	0	1151562..1152578	+	338	209694619	ndpA	VSAL_I1059	-	nucleoid-associated protein Ndpa
986	 39.13	0	1152720..1153910	+	396	209694620	-	VSAL_I1060	-	hypothetical protein
987	 39.58	0	1154092..1155579	-	495	209694621	-	VSAL_I1061	-	transposase
988	 36.21	-1	1155651..1155998	-	115	209694622	-	VSAL_I1062	-	transposase
989	 37.33	0	1156366..1157490	+	374	209694623	rnd	VSAL_I1064	-	ribonuclease D (rnase d)
990	 37.93	0	1157566..1157826	-	86	209694624	minE	VSAL_I1065	-	cell division topological specificity factor
991	 40.10	0	1157829..1158641	-	270	209694625	minD	VSAL_I1066	-	septum site-determining protein MinD (cell division inhibitor MinD)
992	 40.84	0	1158665..1159330	-	221	209694626	minC	VSAL_I1067	-	septum site-determining protein MinC (cell division inhibitor)
993	 32.27	-2	1159542..1159823	+	93	209694627	-	VSAL_I1068	-	hypothetical protein
994	 40.51	0	1159825..1160799	+	324	209694628	-	VSAL_I1069	-	hypothetical protein
995	 41.36	0	1160921..1162963	-	680	209694629	-	VSAL_I1070	-	FAD dependent oxidoreductase
996	 44.47	+1	1163084..1164295	+	403	209694630	fabB	VSAL_I1071	-	3-ketoacyl-ACP synthase FabB
997	 38.90	0	1164455..1165585	+	376	209694631	pdxB	VSAL_I1072	-	erythronate-4-phosphate dehydrogenase
998	 40.53	0	1165585..1166598	+	337	209694632	asd	VSAL_I1073	-	aspartate-semialdehyde dehydrogenase
999	 38.54	0	1166802..1170623	+	1273	209694633	-	VSAL_I1074	-	hypothetical protein
1000	 41.06	0	1170713..1171501	+	262	209694634	truA	VSAL_I1075	-	tRNA pseudouridine synthase A
1001	 41.08	0	1171682..1172572	+	296	209694635	accD	VSAL_I1076	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
1002	 40.91	0	1172671..1173951	+	426	209694636	folC	VSAL_I1077	-	FolC bifunctional protein (tetrahydrofolate synthase) (folylpolyglutamate synthase)
1003	 39.12	0	1173961..1174530	+	189	209694637	-	VSAL_I1078	-	putative sporulation and cell division protein
1004	 40.24	0	1174592..1175083	+	163	209694638	cvpA	VSAL_I1079	-	colicin V production protein (protein DedE)
1005	 41.45	0	1175118..1176632	+	504	209694639	purF	VSAL_I1080	-	amidophosphoribosyltransferase
1006	 38.36	0	1176715..1177590	-	291	209694640	aphB	VSAL_I1081	-	transcriptional regulator AphB
1007	 38.59	0	1177829..1178932	+	367	209694641	-	VSAL_I1082	-	response regulator
1008	 35.62	-1	1178975..1179367	+	130	209694642	-	VSAL_I1083	-	inner membrane protein
1009	 40.66	0	1179452..1179997	+	181	209694643	apt	VSAL_I1084	-	adenine phosphoribosyltransferase
1010	 41.96	0	1180101..1182245	+	714	209694644	dnaX	VSAL_I1085	-	DNA polymerase III subunit tau
1011	 41.96	0	1182334..1182669	+	111	209694645	-	VSAL_I1086	-	hypothetical protein
1012	 46.43	+2	1182772..1183374	+	200	209694646	recR	VSAL_I1087	-	recombination protein RecR
1013	 41.00	0	1183346..1183906	-	186	209694647	-	VSAL_I1088	-	integral membrane protein
1014	 39.79	0	1184217..1185083	-	288	209694648	-	VSAL_I1090	-	transposase
1015	 40.91	0	1185629..1186975	-	448	209694649	-	VSAL_I1091	-	deoxyguanosinetriphosphate triphosphohydrolase
1016	 39.71	0	1187116..1188543	+	475	209694650	calB	VSAL_I1092	-	coniferyl aldehyde dehydrogenase
1017	 42.37	0	1188622..1189506	+	294	209694651	-	VSAL_I1093	-	integral membrane protein
1018	 42.38	0	1189612..1190760	-	382	209694652	-	VSAL_I1094	-	iron-containing alcohol dehydrogenase
1019	 41.02	0	1190957..1191841	+	294	209694653	-	VSAL_I1095	-	transcriptional regulator, AraC-family
1020	 36.52	0	1191884..1192417	+	177	209694654	-	VSAL_I1096	-	hypothetical protein
1021	 40.99	0	1192485..1193699	-	404	209694655	-	VSAL_I1097	-	aminotransferase
1022	 40.59	0	1194026..1195348	+	440	209694656	menF	VSAL_I1098	-	menaquinone-specific isochorismate synthase
1023	 41.52	0	1195345..1197078	+	577	209694657	menD	VSAL_I1099	-	menaquinone biosynthesis protein MenD
1024	 41.38	0	1197062..1197856	+	264	209694658	-	VSAL_I1100	-	acyl-CoA thioester hydrolase
1025	 44.64	+1	1197861..1198727	+	288	209694659	menB	VSAL_I1101	-	naphthoate synthase
1026	 41.64	0	1198806..1199780	+	324	209694660	menC	VSAL_I1102	-	O-succinylbenzoate-CoA synthase
1027	 42.20	0	1199768..1201165	+	465	209694661	menE	VSAL_I1103	-	2-succinylbenzoate--CoA ligase (O-succinylbenzoyl-CoA synthetase)
1028	 37.78	0	1201850..1202164	+	104	209694662	-	VSAL_I1105	-	transposase
1029	 34.53	-1	1206727..1207227	-	166	209694663	-	VSAL_I1109	-	hypothetical protein
1030	 36.53	0	1207732..1208481	+	249	209694664	-	VSAL_I1110	-	hypothetical protein
1031	 39.76	0	1209043..1209696	-	217	209694665	vasL	VSAL_I1112	-	serine/threonine phosphoprotein phosphatase
1032	 39.25	0	1213243..1214070	-	275	209694666	vasF	VSAL_I1114	-	putative type VI secretion protein VasF
1033	 38.78	0	1214072..1215394	-	440	209694667	vasE	VSAL_I1115	-	putative type VI secretion protein VasE
1034	 37.83	0	1215406..1215894	-	162	209694668	vasD	VSAL_I1116	-	putative type VI secretion protein VasD
1035	 39.13	0	1215928..1217289	-	453	209694669	vasC	VSAL_I1117	-	putative type VI secretion protein VasC
1036	 39.82	0	1218905..1221523	-	872	209694670	vasG	VSAL_I1119	-	chaperone ClpB
1037	 38.92	0	1221520..1222449	-	309	209694671	vasG	VSAL_I1120	-	putative type VI secretion protein VasG
1038	 37.39	0	1222512..1224263	-	583	209694672	vasA	VSAL_I1121	-	putative type VI secretion protein VasA
1039	 34.98	-1	1224260..1224685	-	141	209694673	vasS	VSAL_I1122	-	putative type VI secretion protein VasS
1040	 39.30	0	1224773..1226248	-	491	209694674	vasR	VSAL_I1123	-	putative type VI secretion protein VasR
1041	 37.78	0	1226252..1226746	-	164	209694675	vasQ	VSAL_I1124	-	putative type VI secretion protein VasQ
1042	 32.23	-2	1226761..1228302	-	513	209694676	vasJ	VSAL_I1125	-	putative type VI secretion protein VasJ
1043	 27.62	-2	1228554..1228763	-	69	209694677	-	VSAL_I1126	-	hypothetical protein
1044	 40.29	0	1228750..1229310	-	186	209694678	-	VSAL_I1127	-	primosomal replication protein N''
1045	 41.63	0	1229341..1230111	-	256	209694679	-	VSAL_I1128	-	membrane protein
1046	 38.66	0	1230178..1232262	-	694	209694680	-	VSAL_I1129	-	probable ATP-dependent DNA helicase DinG
1047	 30.45	-2	1233860..1234483	+	207	209694681	-	VSAL_I1131	-	hypothetical protein
1048	 40.94	0	1234971..1235969	+	332	209694682	-	VSAL_I1132	-	putative outer membrane protein
1049	 41.58	0	1236478..1237374	+	298	209694683	hisG	VSAL_I1133	-	ATP phosphoribosyltransferase
1050	 42.21	0	1237380..1238675	+	431	209694684	hisD	VSAL_I1134	-	histidinol dehydrogenase
1051	 40.06	0	1238690..1239730	+	346	209694685	hisC	VSAL_I1135	-	histidinol-phosphate aminotransferase
1052	 41.62	0	1239808..1240881	+	357	209694686	hisB	VSAL_I1136	-	histidine biosynthesis bifunctional protein HisB [includes: histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase]
1053	 41.63	0	1240890..1241504	+	204	209694687	hisH	VSAL_I1137	-	imidazole glycerol phosphate synthase subunit HisH (imidazole glycerol synthase glutamine amidotransferase subunit)
1054	 44.85	+1	1241619..1242356	+	245	209694688	hisA	VSAL_I1138	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase (phosphoribosylformimino-5-aminoimidazole carboxamide ribotid isomerase)
1055	 42.51	0	1242338..1243111	+	257	209694689	hisF	VSAL_I1139	-	imidazole glycerol phosphate synthase subunit HisF
1056	 41.55	0	1243108..1243728	+	206	209694690	hisI	VSAL_I1140	-	histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]
1057	 34.35	-1	1243866..1244357	+	163	209694691	-	VSAL_I1141	-	V10 pilin
1058	 39.16	0	1244482..1245168	+	228	209694692	-	VSAL_I1142	-	RNA psedouridine synthase
1059	 40.99	0	1245165..1246130	+	321	209694693	-	VSAL_I1143	-	hypothetical protein
1060	 36.84	0	1246208..1246606	-	132	209694694	-	VSAL_I1144	-	putative lipoprotein
1061	 41.91	0	1246625..1246927	-	100	209694695	-	VSAL_I1145	-	hypothetical protein
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.