version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 952 42.13 0 1121868..1122902 - 344 209694586 - VSAL_I1025 - phage portal protein 953 40.83 0 1122899..1124671 - 590 209694587 - VSAL_I1026 - terminase, ATPase subunit 954 43.04 +1 1124840..1125715 + 291 209694588 - VSAL_I1027 - phage capsid scaffolding protein 955 42.63 +1 1125729..1126739 + 336 209694589 - VSAL_I1028 - major capsid protein 956 43.65 +1 1126756..1127472 + 238 209694590 - VSAL_I1029 - phage terminase, endonuclease subunit 957 35.09 -1 1127601..1127942 + 113 209694591 - VSAL_I1030 - membrane protein, putative phage gene 958 41.72 0 1127935..1128399 + 154 209694592 - VSAL_I1031 - probable head completion/stabilization protein 959 41.52 0 1128396..1128920 + 174 209694593 - VSAL_I1032 - hypothetical protein, putative phage gene 960 43.22 +1 1129637..1130749 + 370 209694594 - VSAL_I1034 - putative tail sheat protein 961 41.45 0 1130749..1131204 + 151 209694595 - VSAL_I1035 - probable tail tube protein 962 45.83 +2 1131216..1131431 + 71 209694596 - VSAL_I1036 - probable rRNA transcription initiatior protein,putative phage gene 963 42.32 0 1131428..1131850 + 140 209694597 - VSAL_I1037 - hypothetical protein, putative phage gene 964 38.21 0 1131853..1132098 + 81 209694598 - VSAL_I1038 - hypothetical protein, putative phage gene 965 40.42 0 1132101..1132340 + 79 209694599 - VSAL_I1039 - probable exported protein, putative phage gene 966 37.50 0 1132337..1132600 + 87 209694600 - VSAL_I1040 - hypothetical protein, putative phage gene 967 45.06 +1 1132788..1134902 + 704 209694601 - VSAL_I1041 - probable tail length determinator 968 41.28 0 1134899..1135225 + 108 209694602 - VSAL_I1042 - hypothetical protein, putative phage gene 969 42.36 0 1135222..1136406 + 394 209694603 - VSAL_I1043 - hypothetical protein, putative phage gene 970 40.95 0 1136399..1136989 + 196 209694604 - VSAL_I1044 - hypothetical protein, putative phage gene 971 43.37 +1 1136992..1139064 + 690 209694605 - VSAL_I1045 - tail fiber protein 972 39.64 0 1139064..1139507 + 147 209694606 - VSAL_I1046 - hypothetical protein, putative phage gene 973 42.84 +1 1139507..1140400 + 297 209694607 - VSAL_I1047 - hypothetical protein, putative phage gene 974 43.17 +1 1140397..1140945 + 182 209694608 - VSAL_I1048 - hypothetical protein, putative phage gene 975 42.56 +1 1140942..1142567 + 541 209694609 - VSAL_I1049 - hypothetical protein, putative phage gene 976 41.41 0 1142569..1142766 + 65 209694610 - VSAL_I1050 - hypothetical protein, putative phage gene 977 35.94 -1 1143101..1143982 + 293 209694611 - VSAL_I1051 - transposase 978 40.67 0 1144549..1144848 + 99 209694612 - VSAL_I1052 - hypothetical protein 979 38.45 0 1145099..1145938 + 279 209694613 - VSAL_I1053 - putative 2OG-Fe(II) oxygenase 980 37.98 0 1146101..1146595 + 164 209694614 - VSAL_I1054 - putative acetyltransferase 981 39.58 0 1146709..1147524 + 271 209694615 - VSAL_I1055 - phosphorylase 982 39.55 0 1147951..1148658 - 235 209694616 cah VSAL_I1056 - carbonic anhydrase precursor 983 38.87 0 1149433..1151238 - 601 209694617 - VSAL_I1057 - putative sulfatase 984 36.84 0 1151258..1151485 - 75 209694618 - VSAL_I1058 - hypothetical protein 985 37.27 0 1151562..1152578 + 338 209694619 ndpA VSAL_I1059 - nucleoid-associated protein Ndpa 986 39.13 0 1152720..1153910 + 396 209694620 - VSAL_I1060 - hypothetical protein 987 39.58 0 1154092..1155579 - 495 209694621 - VSAL_I1061 - transposase 988 36.21 -1 1155651..1155998 - 115 209694622 - VSAL_I1062 - transposase 989 37.33 0 1156366..1157490 + 374 209694623 rnd VSAL_I1064 - ribonuclease D (rnase d) 990 37.93 0 1157566..1157826 - 86 209694624 minE VSAL_I1065 - cell division topological specificity factor 991 40.10 0 1157829..1158641 - 270 209694625 minD VSAL_I1066 - septum site-determining protein MinD (cell division inhibitor MinD) 992 40.84 0 1158665..1159330 - 221 209694626 minC VSAL_I1067 - septum site-determining protein MinC (cell division inhibitor) 993 32.27 -2 1159542..1159823 + 93 209694627 - VSAL_I1068 - hypothetical protein 994 40.51 0 1159825..1160799 + 324 209694628 - VSAL_I1069 - hypothetical protein 995 41.36 0 1160921..1162963 - 680 209694629 - VSAL_I1070 - FAD dependent oxidoreductase 996 44.47 +1 1163084..1164295 + 403 209694630 fabB VSAL_I1071 - 3-ketoacyl-ACP synthase FabB 997 38.90 0 1164455..1165585 + 376 209694631 pdxB VSAL_I1072 - erythronate-4-phosphate dehydrogenase 998 40.53 0 1165585..1166598 + 337 209694632 asd VSAL_I1073 - aspartate-semialdehyde dehydrogenase 999 38.54 0 1166802..1170623 + 1273 209694633 - VSAL_I1074 - hypothetical protein 1000 41.06 0 1170713..1171501 + 262 209694634 truA VSAL_I1075 - tRNA pseudouridine synthase A 1001 41.08 0 1171682..1172572 + 296 209694635 accD VSAL_I1076 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 1002 40.91 0 1172671..1173951 + 426 209694636 folC VSAL_I1077 - FolC bifunctional protein (tetrahydrofolate synthase) (folylpolyglutamate synthase) 1003 39.12 0 1173961..1174530 + 189 209694637 - VSAL_I1078 - putative sporulation and cell division protein 1004 40.24 0 1174592..1175083 + 163 209694638 cvpA VSAL_I1079 - colicin V production protein (protein DedE) 1005 41.45 0 1175118..1176632 + 504 209694639 purF VSAL_I1080 - amidophosphoribosyltransferase 1006 38.36 0 1176715..1177590 - 291 209694640 aphB VSAL_I1081 - transcriptional regulator AphB 1007 38.59 0 1177829..1178932 + 367 209694641 - VSAL_I1082 - response regulator 1008 35.62 -1 1178975..1179367 + 130 209694642 - VSAL_I1083 - inner membrane protein 1009 40.66 0 1179452..1179997 + 181 209694643 apt VSAL_I1084 - adenine phosphoribosyltransferase 1010 41.96 0 1180101..1182245 + 714 209694644 dnaX VSAL_I1085 - DNA polymerase III subunit tau 1011 41.96 0 1182334..1182669 + 111 209694645 - VSAL_I1086 - hypothetical protein 1012 46.43 +2 1182772..1183374 + 200 209694646 recR VSAL_I1087 - recombination protein RecR 1013 41.00 0 1183346..1183906 - 186 209694647 - VSAL_I1088 - integral membrane protein 1014 39.79 0 1184217..1185083 - 288 209694648 - VSAL_I1090 - transposase 1015 40.91 0 1185629..1186975 - 448 209694649 - VSAL_I1091 - deoxyguanosinetriphosphate triphosphohydrolase 1016 39.71 0 1187116..1188543 + 475 209694650 calB VSAL_I1092 - coniferyl aldehyde dehydrogenase 1017 42.37 0 1188622..1189506 + 294 209694651 - VSAL_I1093 - integral membrane protein 1018 42.38 0 1189612..1190760 - 382 209694652 - VSAL_I1094 - iron-containing alcohol dehydrogenase 1019 41.02 0 1190957..1191841 + 294 209694653 - VSAL_I1095 - transcriptional regulator, AraC-family 1020 36.52 0 1191884..1192417 + 177 209694654 - VSAL_I1096 - hypothetical protein 1021 40.99 0 1192485..1193699 - 404 209694655 - VSAL_I1097 - aminotransferase 1022 40.59 0 1194026..1195348 + 440 209694656 menF VSAL_I1098 - menaquinone-specific isochorismate synthase 1023 41.52 0 1195345..1197078 + 577 209694657 menD VSAL_I1099 - menaquinone biosynthesis protein MenD 1024 41.38 0 1197062..1197856 + 264 209694658 - VSAL_I1100 - acyl-CoA thioester hydrolase 1025 44.64 +1 1197861..1198727 + 288 209694659 menB VSAL_I1101 - naphthoate synthase 1026 41.64 0 1198806..1199780 + 324 209694660 menC VSAL_I1102 - O-succinylbenzoate-CoA synthase 1027 42.20 0 1199768..1201165 + 465 209694661 menE VSAL_I1103 - 2-succinylbenzoate--CoA ligase (O-succinylbenzoyl-CoA synthetase) 1028 37.78 0 1201850..1202164 + 104 209694662 - VSAL_I1105 - transposase 1029 34.53 -1 1206727..1207227 - 166 209694663 - VSAL_I1109 - hypothetical protein 1030 36.53 0 1207732..1208481 + 249 209694664 - VSAL_I1110 - hypothetical protein 1031 39.76 0 1209043..1209696 - 217 209694665 vasL VSAL_I1112 - serine/threonine phosphoprotein phosphatase 1032 39.25 0 1213243..1214070 - 275 209694666 vasF VSAL_I1114 - putative type VI secretion protein VasF 1033 38.78 0 1214072..1215394 - 440 209694667 vasE VSAL_I1115 - putative type VI secretion protein VasE 1034 37.83 0 1215406..1215894 - 162 209694668 vasD VSAL_I1116 - putative type VI secretion protein VasD 1035 39.13 0 1215928..1217289 - 453 209694669 vasC VSAL_I1117 - putative type VI secretion protein VasC 1036 39.82 0 1218905..1221523 - 872 209694670 vasG VSAL_I1119 - chaperone ClpB 1037 38.92 0 1221520..1222449 - 309 209694671 vasG VSAL_I1120 - putative type VI secretion protein VasG 1038 37.39 0 1222512..1224263 - 583 209694672 vasA VSAL_I1121 - putative type VI secretion protein VasA 1039 34.98 -1 1224260..1224685 - 141 209694673 vasS VSAL_I1122 - putative type VI secretion protein VasS 1040 39.30 0 1224773..1226248 - 491 209694674 vasR VSAL_I1123 - putative type VI secretion protein VasR 1041 37.78 0 1226252..1226746 - 164 209694675 vasQ VSAL_I1124 - putative type VI secretion protein VasQ 1042 32.23 -2 1226761..1228302 - 513 209694676 vasJ VSAL_I1125 - putative type VI secretion protein VasJ 1043 27.62 -2 1228554..1228763 - 69 209694677 - VSAL_I1126 - hypothetical protein 1044 40.29 0 1228750..1229310 - 186 209694678 - VSAL_I1127 - primosomal replication protein N'' 1045 41.63 0 1229341..1230111 - 256 209694679 - VSAL_I1128 - membrane protein 1046 38.66 0 1230178..1232262 - 694 209694680 - VSAL_I1129 - probable ATP-dependent DNA helicase DinG 1047 30.45 -2 1233860..1234483 + 207 209694681 - VSAL_I1131 - hypothetical protein 1048 40.94 0 1234971..1235969 + 332 209694682 - VSAL_I1132 - putative outer membrane protein 1049 41.58 0 1236478..1237374 + 298 209694683 hisG VSAL_I1133 - ATP phosphoribosyltransferase 1050 42.21 0 1237380..1238675 + 431 209694684 hisD VSAL_I1134 - histidinol dehydrogenase 1051 40.06 0 1238690..1239730 + 346 209694685 hisC VSAL_I1135 - histidinol-phosphate aminotransferase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.