IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.90   STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
692	 45.24	0	722282..722659	+	125	196155517	-	MADE_00694	-	ribosomal protein L7/L12
693	 47.16	0	727093..731265	+	1390	196155518	-	MADE_00697	-	RNA polymerase, beta prime subunit
694	 45.60	0	731575..731949	+	124	196155519	-	MADE_00698	-	30S ribosomal protein S12
695	 47.35	0	732025..732495	+	156	196155520	-	MADE_00699	-	30S ribosomal subunit protein S7
696	 47.51	0	732523..734088	+	521	196155521	-	MADE_00700	-	elongation factor EF-2
697	 45.93	0	734184..734588	+	134	196155522	-	MADE_00701	-	Translation elongation factor EF-Tu
698	 50.94	+1	734624..734782	-	52	196155523	-	MADE_00702	-	hypothetical protein
699	 48.44	+1	735375..736208	+	277	196155524	-	MADE_00703	-	probable reverse transcriptase/maturase family protein
700	 41.62	0	736793..739351	+	852	196155525	-	MADE_00704	-	sensory box/GGDEF/EAL domain protein
701	 47.63	0	739549..740877	+	442	196155526	-	MADE_00705	-	hypothetical protein
702	 30.43	-2	741428..741565	+	45	196155527	-	MADE_00706	-	hypothetical protein
703	 42.69	0	741707..742711	+	334	196155528	-	MADE_00707	-	methyl-accepting chemotaxis sensory transducer
704	 46.25	0	742770..743822	+	350	196155529	-	MADE_00708	-	putative NADPH-dependent aldose reductase
705	 43.29	0	743930..745084	+	384	196155530	-	MADE_00709	-	nptA protein
706	 49.40	+1	745149..746312	-	387	196155531	-	MADE_00710	-	hypothetical protein
707	 49.10	+1	746571..748517	+	648	196155532	-	MADE_00711	-	acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme)
708	 43.88	0	748535..749179	+	214	196155533	-	MADE_00712	-	putative regulator in two-component regulatory system ; LuxR family protein
709	 44.84	0	749139..750059	-	306	196155534	-	MADE_00713	-	ABC-type amino acid transport/signal transduction system,periplasmic component/domain
710	 45.52	0	750179..750613	-	144	196155535	-	MADE_00714	-	aspartyl protease
711	 46.22	0	750631..751662	-	343	196155536	-	MADE_00715	-	Succinylglutamate desuccinylase/aspartoacylase
712	 50.11	+1	751711..752616	-	301	196155537	-	MADE_00716	-	ribosomal protein S6 modification protein
713	 42.98	0	752663..752776	+	37	196155538	-	MADE_00717	-	hypothetical protein
714	 44.55	0	753006..753629	+	207	196155539	-	MADE_00718	-	hypothetical protein
715	 46.52	0	753659..757102	-	1147	196155540	-	MADE_00719	-	Multidomain protein contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain
716	 39.33	-1	757360..757626	+	88	196155541	-	MADE_00720	-	hypothetical protein
717	 47.92	0	757630..759336	+	568	196155542	-	MADE_00721	-	Na+/solute symporter, Ssf family protein
718	 44.90	0	759440..761281	+	613	196155543	-	MADE_00722	-	Signaling protein with a cAMP-binding, CBS domains and predicted nucleotidyltransferase domain
719	 43.17	0	761287..761967	+	226	196155544	-	MADE_00723	-	putative DNA polymerase, exonuclease activity
720	 44.24	0	761969..762958	-	329	196155545	-	MADE_00724	-	putative response regulator
721	 40.48	-1	763085..763504	-	139	196155546	-	MADE_00725	-	hypothetical protein
722	 43.09	0	763786..764943	+	385	196155547	-	MADE_00726	-	TPR domain protein
723	 47.28	0	766036..767247	-	403	196155548	-	MADE_00729	-	putative Na+ dependent nucleoside transporter
724	 44.23	0	767260..767883	-	207	196155549	-	MADE_00730	-	uridine kinase
725	 43.19	0	768072..769025	-	317	196155550	-	MADE_00731	-	hypothetical protein
726	 42.75	0	769025..769831	-	268	196155551	-	MADE_00732	-	hypothetical protein
727	 46.31	0	770304..773477	+	1057	196155552	-	MADE_00733	-	putative Outer membrane protein with a TonB box
728	 48.66	+1	773682..774353	+	223	196155553	-	MADE_00734	-	DJ-1/PfpI family protein
729	 42.58	0	774438..774902	-	154	196155554	-	MADE_00735	-	arginine repressor
730	 48.24	0	775142..776080	+	312	196155555	-	MADE_00736	-	malate dehydrogenase
731	 42.35	0	776271..777080	-	269	196155556	-	MADE_00737	-	methionine sulfoxide reductase A
732	 42.37	0	777102..777278	-	58	196155557	-	MADE_00738	-	hypothetical protein
733	 47.26	0	777304..777705	+	133	196155558	-	MADE_00739	-	catalase-peroxidase KatB
734	 45.33	0	777702..778193	+	163	196155559	-	MADE_00740	-	catalase
735	 37.12	-2	778190..778321	-	43	196155560	-	MADE_00741	-	hypothetical protein
736	 49.39	+1	778347..780968	-	873	196155561	-	MADE_00742	-	phosphoenolpyruvate carboxylase
737	 46.86	0	781201..781821	+	206	196155562	-	MADE_00743	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
738	 45.21	0	782153..783331	+	392	196155563	-	MADE_00744	-	Short-chain alcohol dehydrogenase family enzyme (paraquat)
739	 47.58	0	783839..785179	+	446	196155564	-	MADE_00745	-	Na(+)-translocating NADH-quinone reductase subunit A
740	 47.36	0	785183..786373	+	396	196155565	-	MADE_00746	-	Na(+)-translocating NADH-quinone reductase subunit B
741	 47.19	0	786375..787139	+	254	196155566	-	MADE_00747	-	Na(+)-translocating NADH-quinone reductase subunit C
742	 42.34	0	787150..787782	+	210	196155567	-	MADE_00748	-	NADH-ubiquinone oxidoreductase
743	 44.01	0	787786..788394	+	202	196155568	-	MADE_00749	-	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE
744	 45.82	0	788415..789647	+	410	196155569	-	MADE_00750	-	Na(+)-translocating NADH-quinone reductase subunit F
745	 46.34	0	789738..790790	+	350	196155570	-	MADE_00751	-	thiamin biosynthesis lipoprotein ApbE
746	 42.74	0	790800..791033	+	77	196155571	-	MADE_00752	-	uncharacterized conserved membrane
747	 49.52	+1	791269..792318	+	349	196155572	-	MADE_00753	-	DNA polymerase IV
748	 43.37	0	792401..792649	+	82	196155573	-	MADE_00754	-	hypothetical protein
749	 44.89	0	792713..793603	+	296	196155574	-	MADE_00755	-	Zn-dependent hydrolase, glyoxylase family protein
750	 40.99	-1	793653..793874	-	73	196155575	-	MADE_00756	-	hypothetical protein
751	 45.15	0	793980..794927	-	315	196155576	-	MADE_00757	-	sterol desaturase family protein, putative
752	 45.24	0	794962..795633	+	223	196155577	-	MADE_00758	-	putative transcriptional regulator (Crp family) protein
753	 43.11	0	795637..796311	-	224	196155578	-	MADE_00759	-	transcriptional regulator, TetR family protein
754	 47.84	0	796613..797701	+	362	196155579	-	MADE_00760	-	putative enzyme
755	 49.93	+1	797701..798435	+	244	196155580	-	MADE_00761	-	isochorismatase family protein
756	 47.14	0	798573..798956	+	127	196155581	-	MADE_00762	-	endoribonuclease L-PSP family protein
757	 49.58	+1	799015..799851	+	278	196155582	-	MADE_00763	-	hydrolase, alpha/beta fold family protein
758	 45.21	0	799902..800558	+	218	196155583	-	MADE_00764	-	Nitroreductase
759	 51.41	+1	800582..801112	+	176	196155584	-	MADE_00765	-	NAD(P)H-flavin oxidoreductase
760	 49.90	+1	801132..802622	+	496	196155585	-	MADE_00766	-	methylmalonate-semialdehyde dehydrogenase
761	 46.36	0	802913..805231	+	772	196155586	-	MADE_00767	-	TonB-dependent receptor
762	 48.67	+1	805522..807021	+	499	196155587	-	MADE_00768	-	cytosine/purines, uracil, thiamine, allantoin transporter
763	 44.08	0	807112..807846	-	244	196155588	-	MADE_00769	-	protein containing HTH domain
764	 47.65	0	807977..808381	+	134	196155589	-	MADE_00770	-	hypothetical protein
765	 44.07	0	808389..809198	+	269	196155590	-	MADE_00771	-	hypothetical protein
766	 43.31	0	809209..809679	+	156	196155591	-	MADE_00772	-	YiaAB two helix protein
767	 48.56	+1	809865..810698	+	277	196155592	-	MADE_00773	-	glutamine amidotransferase class-II domain protein
768	 46.42	0	810695..811687	-	330	196155593	-	MADE_00774	-	transcriptional regulator, LysR family protein
769	 44.57	0	811862..812377	+	171	196155594	-	MADE_00775	-	glyoxalase family protein
770	 47.35	0	812529..813170	-	213	196155595	-	MADE_00776	-	probable metallo-beta-lactamase
771	 48.70	+1	813174..814481	-	435	196155596	-	MADE_00777	-	putative cationic amino acid transport protein
772	 49.30	+1	814501..816141	-	546	196155597	-	MADE_00778	-	predicted metal-dependent amidohydrolase with the TIM-barrel fold protein
773	 48.08	0	816213..817229	-	338	196155598	-	MADE_00779	-	Threonine dehydratase
774	 44.48	0	817536..820388	+	950	196155599	-	MADE_00780	-	PAS sensor diguanylate cyclase and phophodiesterase
775	 43.47	0	820401..820775	+	124	196155600	-	MADE_00781	-	hypothetical protein
776	 46.90	0	820906..823131	-	741	196155601	-	MADE_00782	-	Dipeptidyl peptidase IV
777	 49.20	+1	823313..823810	+	165	196155602	-	MADE_00783	-	nucleoside-diphosphate-sugar epimerase
778	 42.26	0	823897..824658	+	253	196155603	-	MADE_00784	-	putative RNA methyltransferase
779	 42.02	0	824672..825166	+	164	196155604	-	MADE_00785	-	hypothetical protein
780	 41.71	0	825446..826018	+	190	196155605	-	MADE_00786	-	hypothetical protein
781	 44.44	0	826095..828218	+	707	196155606	-	MADE_00787	-	cellulose synthase catalytic subunit
782	 44.97	0	828218..830494	+	758	196155607	-	MADE_00788	-	celB protein
783	 48.68	+1	830488..831588	+	366	196155608	-	MADE_00789	-	endoglucanase Y
784	 48.00	0	831585..834032	+	815	196155609	-	MADE_00790	-	cellulose synthase operon protein C
785	 45.27	0	834084..835499	-	471	196155610	-	MADE_00791	-	Rhs family protein
786	 45.64	0	835683..835877	-	64	196155611	-	MADE_00792	-	TonB system transport protein ExbD2
787	 47.05	0	836130..837215	-	361	196155612	-	MADE_00793	-	phage-related DNA polymerase
788	 43.12	0	837212..837967	-	251	196155613	-	MADE_00794	-	DNA-directed DNA polymerase I
789	 43.19	0	838078..838290	-	70	196155614	-	MADE_00795	-	hypothetical protein
790	 43.63	0	838370..839068	-	232	196155615	-	MADE_00796	-	hypothetical protein
791	 46.23	0	839065..839700	-	211	196155616	-	MADE_00797	-	hypothetical protein
44.90	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.