IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.90   STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
644	 46.79	0	668947..670380	+	477	196155469	-	MADE_00646	-	N-acetylmuramoyl-l-alanine amidase II, murein hydrolase
645	 44.61	0	670481..672307	+	608	196155470	-	MADE_00647	-	DNA mismatch repair protein
646	 45.92	0	672339..673244	+	301	196155471	-	MADE_00648	-	tRNA delta(2)-isopentenylpyrophosphate transferase
647	 41.37	-1	673323..673571	+	82	196155472	-	MADE_00649	-	RNA-binding protein Hfq
648	 46.98	0	673589..674878	+	429	196155473	-	MADE_00650	-	GTP-binding protein HflX
649	 49.65	+1	674946..676097	+	383	196155474	-	MADE_00651	-	HflK complex with HflC
650	 44.78	0	676103..676984	+	293	196155475	-	MADE_00652	-	Membrane protease, stomatin/prohibitin family protein
651	 48.67	+1	677304..678881	+	525	196155476	-	MADE_00653	-	putative p-aminobenzoyl-glutamate transport protein (AbgT family)
652	 46.30	0	679114..680193	+	359	196155477	-	MADE_00654	-	Protoheme ferro-lyase
653	 45.34	0	680287..680694	+	135	196155478	-	MADE_00655	-	hypothetical protein
654	 47.71	0	680928..682568	+	546	196155479	-	MADE_00656	-	thiamine pyrophosphate enzyme-like TPP-binding
655	 49.44	+1	682601..684028	+	475	196155480	-	MADE_00657	-	Aldehyde dehydrogenase
656	 50.27	+1	684131..684496	-	121	196155481	-	MADE_00658	-	hypothetical protein
657	 44.62	0	684635..685387	+	250	196155482	-	MADE_00659	-	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase
658	 46.36	0	685636..686610	+	324	196155483	-	MADE_00660	-	putative lactonizing lipase
659	 46.16	0	686610..687599	+	329	196155484	-	MADE_00661	-	lipase chaperone
660	 45.81	0	687778..688338	+	186	196155485	-	MADE_00662	-	Glutathione S-transferase
661	 47.88	0	688338..688997	+	219	196155486	-	MADE_00663	-	Glutathione S-transferase
662	 47.49	0	689050..689967	-	305	196155487	-	MADE_00664	-	homocysteine S-methyltransferase family protein
663	 45.35	0	690001..691173	-	390	196155488	-	MADE_00665	-	transcriptional regulator, ROK family protein
664	 47.06	0	691459..692427	+	322	196155489	-	MADE_00666	-	Sugar kinase, ribokinase family protein
665	 46.88	0	692616..693191	-	191	196155490	-	MADE_00667	-	elongation factor P
666	 49.91	+1	693289..695019	-	576	196155491	-	MADE_00668	-	DNA ligase
667	 47.59	0	695019..696035	-	338	196155492	-	MADE_00669	-	exonuclease of the beta-lactamase fold involved in RNA processing-like protein
668	 48.71	+1	696196..698802	+	868	196155493	-	MADE_00670	-	ATP-dependent RNA helicase, DEAD/DEAH box family protein
669	 47.66	0	698987..699691	+	234	196155494	-	MADE_00671	-	metallophosphoesterase
670	 50.00	+1	699850..700743	-	297	196155495	-	MADE_00672	-	glycosyl hydrolase, family 10
671	 46.67	0	700730..701794	-	354	196155496	-	MADE_00673	-	Porphyromonas-type peptidyl-arginine deiminase
672	 45.30	0	701933..702517	-	194	196155497	-	MADE_00674	-	short chain dehydrogenase
673	 45.32	0	702803..703486	+	227	196155498	-	MADE_00675	-	GTP cyclohydrolase I
674	 45.18	0	704171..706120	-	649	196155499	-	MADE_00676	-	alpha-amylase, amylosucrase
675	 44.42	0	706420..707637	+	405	196155500	-	MADE_00677	-	transporter, putative
676	 46.94	0	707779..708594	+	271	196155501	-	MADE_00678	-	mechanosensitive ion channel family protein
677	 46.88	0	708694..709077	-	127	196155502	-	MADE_00679	-	glyoxylase I family protein
678	 46.47	0	709109..710014	-	301	196155503	-	MADE_00680	-	oxidoreductase, aldo/keto reductase family protein
679	 47.88	0	710313..710855	+	180	196155504	-	MADE_00681	-	lipoprotein Blc
680	 47.76	0	710952..711998	+	348	196155505	-	MADE_00682	-	dihydroorotase
681	 46.23	0	712119..713498	+	459	196155506	-	MADE_00683	-	ATP-dependent RNA helicase DbpA
682	 45.36	0	713534..713932	+	132	196155507	-	MADE_00684	-	hypothetical protein
683	 45.72	0	714113..716179	-	688	196155508	-	MADE_00685	-	metalloendopeptidase PepO
684	 36.23	-2	716215..716421	-	68	196155509	-	MADE_00686	-	hypothetical protein
685	 48.24	0	716443..717066	+	207	196155510	-	MADE_00687	-	Dimethylmenaquinone methyltransferase
686	 47.39	0	717324..719165	+	613	196155511	-	MADE_00688	-	multidrug resistance ABC transporter ATP-binding and permease protein
687	 43.95	0	719529..719867	+	112	196155512	-	MADE_00689	-	Preprotein translocase subunit SecE
688	 44.75	0	719872..720423	+	183	196155513	-	MADE_00690	-	transcription termination/antitermination factor NusG
689	 33.33	-2	720844..720957	+	37	196155514	-	MADE_00691	-	hypothetical protein
690	 46.98	0	720942..721388	+	148	196155515	-	MADE_00692	-	ribosomal protein L11
691	 46.29	0	721376..722224	+	282	196155516	-	MADE_00693	-	ribosomal protein L1
692	 45.24	0	722282..722659	+	125	196155517	-	MADE_00694	-	ribosomal protein L7/L12
693	 47.16	0	727093..731265	+	1390	196155518	-	MADE_00697	-	RNA polymerase, beta prime subunit
694	 45.60	0	731575..731949	+	124	196155519	-	MADE_00698	-	30S ribosomal protein S12
695	 47.35	0	732025..732495	+	156	196155520	-	MADE_00699	-	30S ribosomal subunit protein S7
696	 47.51	0	732523..734088	+	521	196155521	-	MADE_00700	-	elongation factor EF-2
697	 45.93	0	734184..734588	+	134	196155522	-	MADE_00701	-	Translation elongation factor EF-Tu
698	 50.94	+1	734624..734782	-	52	196155523	-	MADE_00702	-	hypothetical protein
699	 48.44	+1	735375..736208	+	277	196155524	-	MADE_00703	-	probable reverse transcriptase/maturase family protein
700	 41.62	0	736793..739351	+	852	196155525	-	MADE_00704	-	sensory box/GGDEF/EAL domain protein
701	 47.63	0	739549..740877	+	442	196155526	-	MADE_00705	-	hypothetical protein
702	 30.43	-2	741428..741565	+	45	196155527	-	MADE_00706	-	hypothetical protein
703	 42.69	0	741707..742711	+	334	196155528	-	MADE_00707	-	methyl-accepting chemotaxis sensory transducer
704	 46.25	0	742770..743822	+	350	196155529	-	MADE_00708	-	putative NADPH-dependent aldose reductase
705	 43.29	0	743930..745084	+	384	196155530	-	MADE_00709	-	nptA protein
706	 49.40	+1	745149..746312	-	387	196155531	-	MADE_00710	-	hypothetical protein
707	 49.10	+1	746571..748517	+	648	196155532	-	MADE_00711	-	acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme)
708	 43.88	0	748535..749179	+	214	196155533	-	MADE_00712	-	putative regulator in two-component regulatory system ; LuxR family protein
709	 44.84	0	749139..750059	-	306	196155534	-	MADE_00713	-	ABC-type amino acid transport/signal transduction system,periplasmic component/domain
710	 45.52	0	750179..750613	-	144	196155535	-	MADE_00714	-	aspartyl protease
711	 46.22	0	750631..751662	-	343	196155536	-	MADE_00715	-	Succinylglutamate desuccinylase/aspartoacylase
712	 50.11	+1	751711..752616	-	301	196155537	-	MADE_00716	-	ribosomal protein S6 modification protein
713	 42.98	0	752663..752776	+	37	196155538	-	MADE_00717	-	hypothetical protein
714	 44.55	0	753006..753629	+	207	196155539	-	MADE_00718	-	hypothetical protein
715	 46.52	0	753659..757102	-	1147	196155540	-	MADE_00719	-	Multidomain protein contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain
716	 39.33	-1	757360..757626	+	88	196155541	-	MADE_00720	-	hypothetical protein
717	 47.92	0	757630..759336	+	568	196155542	-	MADE_00721	-	Na+/solute symporter, Ssf family protein
718	 44.90	0	759440..761281	+	613	196155543	-	MADE_00722	-	Signaling protein with a cAMP-binding, CBS domains and predicted nucleotidyltransferase domain
719	 43.17	0	761287..761967	+	226	196155544	-	MADE_00723	-	putative DNA polymerase, exonuclease activity
720	 44.24	0	761969..762958	-	329	196155545	-	MADE_00724	-	putative response regulator
721	 40.48	-1	763085..763504	-	139	196155546	-	MADE_00725	-	hypothetical protein
722	 43.09	0	763786..764943	+	385	196155547	-	MADE_00726	-	TPR domain protein
723	 47.28	0	766036..767247	-	403	196155548	-	MADE_00729	-	putative Na+ dependent nucleoside transporter
724	 44.23	0	767260..767883	-	207	196155549	-	MADE_00730	-	uridine kinase
725	 43.19	0	768072..769025	-	317	196155550	-	MADE_00731	-	hypothetical protein
726	 42.75	0	769025..769831	-	268	196155551	-	MADE_00732	-	hypothetical protein
727	 46.31	0	770304..773477	+	1057	196155552	-	MADE_00733	-	putative Outer membrane protein with a TonB box
728	 48.66	+1	773682..774353	+	223	196155553	-	MADE_00734	-	DJ-1/PfpI family protein
729	 42.58	0	774438..774902	-	154	196155554	-	MADE_00735	-	arginine repressor
730	 48.24	0	775142..776080	+	312	196155555	-	MADE_00736	-	malate dehydrogenase
731	 42.35	0	776271..777080	-	269	196155556	-	MADE_00737	-	methionine sulfoxide reductase A
732	 42.37	0	777102..777278	-	58	196155557	-	MADE_00738	-	hypothetical protein
733	 47.26	0	777304..777705	+	133	196155558	-	MADE_00739	-	catalase-peroxidase KatB
734	 45.33	0	777702..778193	+	163	196155559	-	MADE_00740	-	catalase
735	 37.12	-2	778190..778321	-	43	196155560	-	MADE_00741	-	hypothetical protein
736	 49.39	+1	778347..780968	-	873	196155561	-	MADE_00742	-	phosphoenolpyruvate carboxylase
737	 46.86	0	781201..781821	+	206	196155562	-	MADE_00743	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
738	 45.21	0	782153..783331	+	392	196155563	-	MADE_00744	-	Short-chain alcohol dehydrogenase family enzyme (paraquat)
739	 47.58	0	783839..785179	+	446	196155564	-	MADE_00745	-	Na(+)-translocating NADH-quinone reductase subunit A
740	 47.36	0	785183..786373	+	396	196155565	-	MADE_00746	-	Na(+)-translocating NADH-quinone reductase subunit B
741	 47.19	0	786375..787139	+	254	196155566	-	MADE_00747	-	Na(+)-translocating NADH-quinone reductase subunit C
742	 42.34	0	787150..787782	+	210	196155567	-	MADE_00748	-	NADH-ubiquinone oxidoreductase
743	 44.01	0	787786..788394	+	202	196155568	-	MADE_00749	-	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE
44.90	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.