IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
588	 48.47	+1	623833..625563	-	576	196155413	-	MADE_00590	-	gamma-glutamyltranspeptidase
589	 46.33	0	625582..626928	-	448	196155414	-	MADE_00591	-	Na+/H+ antiporter family protein
590	 44.66	0	627158..629179	+	673	196155415	-	MADE_00592	-	Beta-hexosaminidase A precursor
591	 43.51	0	629261..630331	+	356	196155416	-	MADE_00593	-	MscS Mechanosensitive ion channel
592	 44.30	0	630491..631840	-	449	196155417	-	MADE_00594	-	putative lipoprotein
593	 47.29	0	632039..633034	-	331	196155418	-	MADE_00595	-	glucokinase regulatory-like protein
594	 50.23	+1	633225..634301	+	358	196155419	-	MADE_00596	-	alanine racemase
595	 44.11	0	634699..635403	-	234	196155420	-	MADE_00597	-	hypothetical protein
596	 40.81	-1	635625..635945	-	106	196155421	-	MADE_00598	-	hypothetical protein
597	 41.86	0	636052..636438	-	128	196155422	-	MADE_00599	-	Glyoxalase/bleomycin resistance protein/dioxygenase
598	 45.40	0	636742..637860	+	372	196155423	-	MADE_00600	-	hypothetical protein
599	 43.73	0	637881..638678	+	265	196155424	-	MADE_00601	-	probable ABC transporter, periplasmic substrate-binding protein
600	 45.47	0	638848..640116	+	422	196155425	-	MADE_00602	-	putative manganese transporter
601	 50.25	+1	640301..640708	+	135	196155426	-	MADE_00603	-	hypothetical protein
602	 42.73	0	640789..641118	-	109	196155427	-	MADE_00604	-	PhnA protein
603	 44.30	0	641143..641598	-	151	196155428	-	MADE_00605	-	acetyltransferase, GNAT family protein
604	 41.84	0	641595..642017	-	140	196155429	-	MADE_00606	-	Histone acetyltransferase HPA2/related acetyltransferase
605	 43.48	0	642100..642237	-	45	196155430	-	MADE_00607	-	hypothetical protein
606	 40.19	-1	642281..642703	+	140	196155431	-	MADE_00608	-	hypothetical protein
607	 35.12	-2	642759..642926	+	55	196155432	-	MADE_00609	-	hypothetical protein
608	 38.64	-1	643255..643518	-	87	196155433	-	MADE_00610	-	hypothetical protein
609	 44.20	0	643680..643817	-	45	196155434	-	MADE_00611	-	Plasmid maintenance system antidote protein
610	 42.22	0	644424..644648	+	74	196155435	-	MADE_00612	-	hypothetical protein
611	 37.07	-2	644638..644931	+	97	196155436	-	MADE_00613	-	putative relE protein
612	 42.09	0	645043..645339	-	98	196155437	-	MADE_00614	-	Plasmid stabilization system
613	 42.01	0	645343..645561	-	72	196155438	-	MADE_00615	-	hypothetical protein
614	 42.37	0	645987..646163	-	58	196155439	-	MADE_00616	-	glucose-6-phosphate isomerase
615	 47.95	0	646261..646431	-	56	196155440	-	MADE_00617	-	hypothetical protein
616	 43.13	0	646539..647528	+	329	196155441	-	MADE_00618	-	ISGsu4, transposase
617	 42.91	0	647963..648223	-	86	196155442	-	MADE_00619	-	hypothetical protein
618	 42.47	0	648228..648446	-	72	196155443	-	MADE_00620	-	predicted transcriptional regulator
619	 45.61	0	648555..648668	-	37	196155444	-	MADE_00621	-	hypothetical protein
620	 41.27	-1	648688..648939	-	83	196155445	-	MADE_00622	-	hypothetical protein
621	 41.15	-1	649070..649312	+	80	196155446	-	MADE_00623	-	predicted transcriptional regulator
622	 43.94	0	649979..650242	-	87	196155447	-	MADE_00624	-	hypothetical protein
623	 41.04	-1	650527..651006	-	159	196155448	-	MADE_00625	-	hypothetical protein
624	 40.48	-1	651120..651833	-	237	196155449	-	MADE_00626	-	hypothetical protein
625	 46.03	0	651838..652089	-	83	196155450	-	MADE_00627	-	hypothetical protein
626	 42.96	0	652463..653179	+	238	196155451	-	MADE_00628	-	ISGsu4, transposase
627	 43.15	0	653202..653588	-	128	196155452	-	MADE_00629	-	PilT protein domain protein
628	 41.99	0	653588..653818	-	76	196155453	-	MADE_00630	-	Prevent-host-death protein
629	 42.99	0	654192..655082	-	296	196155454	-	MADE_00631	-	regulatory protein, LysR:LysR, substrate-binding
630	 45.78	0	655286..657004	+	572	196155455	-	MADE_00632	-	toxin secretion ABC transporter ATP-binding protein
631	 50.62	+1	657005..658057	+	350	196155456	-	MADE_00633	-	membrane fusion protein
632	 46.12	0	658051..659481	+	476	196155457	-	MADE_00634	-	outer membrane component of multidrug efflux pump
633	 43.79	0	659670..660482	-	270	196155458	-	MADE_00635	-	hypothetical protein
634	 36.43	-2	660720..660848	-	42	196155459	-	MADE_00636	-	hypothetical protein
635	 39.72	-1	660900..661181	-	93	196155460	-	MADE_00637	-	hypothetical protein
636	 48.60	+1	661249..661713	-	154	196155461	-	MADE_00638	-	CheC-like protein
637	 44.95	0	662212..662676	-	154	196155462	-	MADE_00639	-	stationary-phase regulator of sigma D, the major sigma subunit of RNA polymerase
638	 44.96	0	662840..663673	+	277	196155463	-	MADE_00640	-	NUDIX family pyrophosphohydrolase containing a Zn-finger
639	 45.76	0	663902..665044	+	380	196155464	-	MADE_00641	-	uroporphyrinogen decarboxylase
640	 48.06	0	665069..665713	+	214	196155465	-	MADE_00642	-	hypothetical protein
641	 46.63	0	665757..666899	-	380	196155466	-	MADE_00643	-	putative 4Fe-4S binding protein
642	 49.93	+1	666906..668405	+	499	196155467	-	MADE_00644	-	carbohydrate kinase, YjeF related protein
643	 43.89	0	668480..668962	+	160	196155468	-	MADE_00645	-	ATP/GTP hydrolase
644	 46.79	0	668947..670380	+	477	196155469	-	MADE_00646	-	N-acetylmuramoyl-l-alanine amidase II, murein hydrolase
645	 44.61	0	670481..672307	+	608	196155470	-	MADE_00647	-	DNA mismatch repair protein
646	 45.92	0	672339..673244	+	301	196155471	-	MADE_00648	-	tRNA delta(2)-isopentenylpyrophosphate transferase
647	 41.37	-1	673323..673571	+	82	196155472	-	MADE_00649	-	RNA-binding protein Hfq
648	 46.98	0	673589..674878	+	429	196155473	-	MADE_00650	-	GTP-binding protein HflX
649	 49.65	+1	674946..676097	+	383	196155474	-	MADE_00651	-	HflK complex with HflC
650	 44.78	0	676103..676984	+	293	196155475	-	MADE_00652	-	Membrane protease, stomatin/prohibitin family protein
651	 48.67	+1	677304..678881	+	525	196155476	-	MADE_00653	-	putative p-aminobenzoyl-glutamate transport protein (AbgT family)
652	 46.30	0	679114..680193	+	359	196155477	-	MADE_00654	-	Protoheme ferro-lyase
653	 45.34	0	680287..680694	+	135	196155478	-	MADE_00655	-	hypothetical protein
654	 47.71	0	680928..682568	+	546	196155479	-	MADE_00656	-	thiamine pyrophosphate enzyme-like TPP-binding
655	 49.44	+1	682601..684028	+	475	196155480	-	MADE_00657	-	Aldehyde dehydrogenase
656	 50.27	+1	684131..684496	-	121	196155481	-	MADE_00658	-	hypothetical protein
657	 44.62	0	684635..685387	+	250	196155482	-	MADE_00659	-	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- benzoquinol methylase
658	 46.36	0	685636..686610	+	324	196155483	-	MADE_00660	-	putative lactonizing lipase
659	 46.16	0	686610..687599	+	329	196155484	-	MADE_00661	-	lipase chaperone
660	 45.81	0	687778..688338	+	186	196155485	-	MADE_00662	-	Glutathione S-transferase
661	 47.88	0	688338..688997	+	219	196155486	-	MADE_00663	-	Glutathione S-transferase
662	 47.49	0	689050..689967	-	305	196155487	-	MADE_00664	-	homocysteine S-methyltransferase family protein
663	 45.35	0	690001..691173	-	390	196155488	-	MADE_00665	-	transcriptional regulator, ROK family protein
664	 47.06	0	691459..692427	+	322	196155489	-	MADE_00666	-	Sugar kinase, ribokinase family protein
665	 46.88	0	692616..693191	-	191	196155490	-	MADE_00667	-	elongation factor P
666	 49.91	+1	693289..695019	-	576	196155491	-	MADE_00668	-	DNA ligase
667	 47.59	0	695019..696035	-	338	196155492	-	MADE_00669	-	exonuclease of the beta-lactamase fold involved in RNA processing-like protein
668	 48.71	+1	696196..698802	+	868	196155493	-	MADE_00670	-	ATP-dependent RNA helicase, DEAD/DEAH box family protein
669	 47.66	0	698987..699691	+	234	196155494	-	MADE_00671	-	metallophosphoesterase
670	 50.00	+1	699850..700743	-	297	196155495	-	MADE_00672	-	glycosyl hydrolase, family 10
671	 46.67	0	700730..701794	-	354	196155496	-	MADE_00673	-	Porphyromonas-type peptidyl-arginine deiminase
672	 45.30	0	701933..702517	-	194	196155497	-	MADE_00674	-	short chain dehydrogenase
673	 45.32	0	702803..703486	+	227	196155498	-	MADE_00675	-	GTP cyclohydrolase I
674	 45.18	0	704171..706120	-	649	196155499	-	MADE_00676	-	alpha-amylase, amylosucrase
675	 44.42	0	706420..707637	+	405	196155500	-	MADE_00677	-	transporter, putative
676	 46.94	0	707779..708594	+	271	196155501	-	MADE_00678	-	mechanosensitive ion channel family protein
677	 46.88	0	708694..709077	-	127	196155502	-	MADE_00679	-	glyoxylase I family protein
678	 46.47	0	709109..710014	-	301	196155503	-	MADE_00680	-	oxidoreductase, aldo/keto reductase family protein
679	 47.88	0	710313..710855	+	180	196155504	-	MADE_00681	-	lipoprotein Blc
680	 47.76	0	710952..711998	+	348	196155505	-	MADE_00682	-	dihydroorotase
681	 46.23	0	712119..713498	+	459	196155506	-	MADE_00683	-	ATP-dependent RNA helicase DbpA
682	 45.36	0	713534..713932	+	132	196155507	-	MADE_00684	-	hypothetical protein
683	 45.72	0	714113..716179	-	688	196155508	-	MADE_00685	-	metalloendopeptidase PepO
684	 36.23	-2	716215..716421	-	68	196155509	-	MADE_00686	-	hypothetical protein
685	 48.24	0	716443..717066	+	207	196155510	-	MADE_00687	-	Dimethylmenaquinone methyltransferase
686	 47.39	0	717324..719165	+	613	196155511	-	MADE_00688	-	multidrug resistance ABC transporter ATP-binding and permease protein
687	 43.95	0	719529..719867	+	112	196155512	-	MADE_00689	-	Preprotein translocase subunit SecE
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.