version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 411 44.01 0 430770..431078 + 102 196155236 - MADE_00413 - purine-binding chemotaxis protein CheW 412 47.25 0 431167..431676 + 169 196155237 - MADE_00414 - CheD 413 47.95 0 431679..432725 + 348 196155238 - MADE_00415 - chemotaxis-specific methylesterase 414 41.38 -1 433156..433416 + 86 196155239 - MADE_00416 - hypothetical protein 415 46.93 0 433413..433640 - 75 196155240 - MADE_00417 - hypothetical protein 416 49.02 +1 433845..433997 + 50 196155241 - MADE_00418 - hypothetical protein 417 45.61 0 434236..434349 + 37 196155242 - MADE_00419 - hypothetical protein 418 47.46 0 434502..435506 + 334 196155243 - MADE_00420 - hypothetical maturase 419 46.56 0 435631..436356 - 241 196155244 - MADE_00421 - Cryptic haloacid dehalogenase 1 420 43.22 0 436533..438332 - 599 196155245 - MADE_00422 - GGDEF family protein 421 49.83 +1 438475..439359 - 294 196155246 - MADE_00423 - predicted permease, DMT superfamily protein 422 48.75 +1 439643..440161 + 172 196155247 - MADE_00424 - putative hydrolase/phosphatase protein 423 37.82 -2 440165..440320 - 51 196155248 - MADE_00425 - hypothetical protein 424 40.18 -1 440399..444241 + 1280 196155249 - MADE_00426 - putative two-component system sensor kinase/response regulator fusion protein 425 46.91 0 444260..444583 - 107 196155250 - MADE_00427 - hypothetical protein 426 44.08 0 444648..445652 - 334 196155251 - MADE_00428 - Twin-arginine translocation pathway signal 427 46.97 0 445656..446660 - 334 196155252 - MADE_00429 - transcriptional repressor, LacI family protein 428 50.18 +1 447058..448191 + 377 196155253 - MADE_00430 - oxidoreductase, Gfo/Idh/MocA family protein 429 49.06 +1 448228..449295 + 355 196155254 - MADE_00431 - Xylose isomerase-like TIM barrel 430 46.48 0 449346..450539 + 397 196155255 - MADE_00432 - putative nucleoside permease protein 431 45.38 0 450532..451461 + 309 196155256 - MADE_00433 - Twin-arginine translocation pathway signal 432 47.21 0 451506..453191 + 561 196155257 - MADE_00434 - oxidoreductase 433 44.98 0 453191..453808 + 205 196155258 - MADE_00435 - Twin-arginine translocation pathway signal 434 44.80 0 453796..454641 + 281 196155259 - MADE_00436 - putative multi-domain protein 435 44.04 0 454638..455786 - 382 196155260 - MADE_00437 - Iron-containing alcohol dehydrogenase 436 45.11 0 461725..462726 + 333 196155261 - MADE_00438 - branched-chain amino acid aminotransferase 437 45.52 0 462797..463543 - 248 196155262 - MADE_00439 - phosphoglyceromutase 438 43.07 0 463720..464181 - 153 196155263 - MADE_00440 - hypothetical protein 439 45.77 0 464656..467373 + 905 196155264 - MADE_00441 - aconitate hydratase 1 440 41.62 0 467438..467932 - 164 196155265 - MADE_00442 - hypothetical protein 441 45.33 0 468072..470288 - 738 196155266 - MADE_00443 - Bacterial type II secretion system protein E:GAF domain 442 45.51 0 470706..471017 + 103 196155267 - MADE_00444 - 30S ribosomal protein S10 443 45.85 0 471036..471674 + 212 196155268 - MADE_00445 - 50S ribosomal subunit protein L3 444 48.18 0 471693..472298 + 201 196155269 - MADE_00446 - 50S ribosomal protein L4 445 44.58 0 472355..472594 + 79 196155270 - MADE_00447 - 50S ribosomal protein L23 446 49.21 +1 472609..473433 + 274 196155271 - MADE_00448 - 50S ribosomal protein L2 447 48.77 +1 473563..473724 + 53 196155272 - MADE_00449 - 30S ribosomal protein S19 448 49.55 +1 473736..474068 + 110 196155273 - MADE_00450 - ribosomal protein L22 449 50.00 +1 474078..474509 + 143 196155274 - MADE_00451 - 30S ribosomal protein S3 450 48.18 0 474512..474922 + 136 196155275 - MADE_00452 - 50S ribosomal protein L16 451 44.27 0 474922..475113 + 63 196155276 - MADE_00453 - ribosomal protein L29 452 43.80 0 475113..475370 + 85 196155277 - MADE_00454 - ribosomal protein S17 453 47.98 0 475367..475564 - 65 196155278 - MADE_00455 - hypothetical protein 454 49.02 +1 475769..475921 + 50 196155279 - MADE_00456 - hypothetical protein 455 47.72 0 476160..477431 + 423 196155280 - MADE_00457 - hypothetical maturase 456 44.60 0 477574..478665 - 363 196155281 - MADE_00458 - glycosyl transferase, group 1 family protein 457 45.28 0 478694..479773 - 359 196155282 - MADE_00459 - lipopolysaccharide heptosyltransferase-1, putative 458 44.70 0 479903..481213 + 436 196155283 - MADE_00460 - 3-deoxy-D-manno-octulosonic-acid transferase 459 47.13 0 481493..483202 - 569 196155284 - MADE_00461 - Na+/H+ antiporter 460 45.61 0 483620..484450 + 276 196155285 - MADE_00462 - hypothetical protein 461 43.82 0 484696..485229 + 177 196155286 - MADE_00463 - hypothetical protein 462 48.14 0 485328..487238 - 636 196155287 - MADE_00464 - methyl-accepting chemotaxis protein 463 46.44 0 487541..489730 - 729 196155288 - MADE_00465 - peptidyl-dipeptidase Dcp 464 44.89 0 489977..490504 + 175 196155289 - MADE_00466 - formyltetrahydrofolate deformylase 465 46.02 0 490613..491416 - 267 196155290 - MADE_00467 - formyltetrahydrofolate deformylase 466 37.72 -2 491459..491572 + 37 196155291 - MADE_00468 - hypothetical protein 467 47.86 0 491690..492343 - 217 196155292 - MADE_00469 - 2,5 RNA ligase 468 49.12 +1 492587..495271 + 894 196155293 - MADE_00470 - ATP-dependent helicase HrpB 469 48.34 +1 495379..496644 - 421 196155294 - MADE_00471 - membrane-bound lytic transglycolase-related protein 470 47.73 0 497043..499271 + 742 196155295 - MADE_00472 - penicillin-binding protein 1B 471 42.74 0 499417..499533 - 38 196155296 - MADE_00473 - hypothetical protein 472 43.43 0 499539..499835 - 98 196155297 - MADE_00474 - hypothetical protein 473 34.04 -2 500006..500146 - 46 196155298 - MADE_00475 - hypothetical protein 474 46.67 0 500248..501177 - 309 196155299 - MADE_00476 - hypothetical protein 475 42.92 0 501636..502271 + 211 196155300 - MADE_00477 - AraC-type DNA-binding domain-containing protein 476 47.79 0 502320..503135 - 271 196155301 - MADE_00478 - hypothetical protein 477 48.08 0 503418..503756 + 112 196155302 - MADE_00479 - nitrogen regulatory protein P-II 478 48.32 +1 503789..505036 + 415 196155303 - MADE_00480 - putative ammonium transporter 479 48.94 +1 505270..506961 + 563 196155304 - MADE_00481 - gamma-glutamyltranspeptidase 480 47.68 0 507123..508049 + 308 196155305 - MADE_00482 - putative melanin biosynthesis protein TyrA 481 45.68 0 508119..509195 - 358 196155306 - MADE_00483 - adenylate cyclase 482 48.75 +1 509372..510688 - 438 196155307 - MADE_00484 - Glutamate-1-semialdehyde aminotransferase 483 48.17 0 510657..511721 - 354 196155308 - MADE_00485 - aspartate carbamoyltransferase 484 45.33 0 511802..512476 - 224 196155309 - MADE_00486 - transcriptional regulator, TetR family protein 485 48.60 +1 512593..513732 + 379 196155310 - MADE_00487 - efflux transporter, RND family, MFP subunit 486 48.20 0 513732..516878 + 1048 196155311 - MADE_00488 - AcrB/AcrD/AcrF family protein 487 46.30 0 517043..517759 + 238 196155312 - MADE_00489 - hypothetical protein 488 45.35 0 517756..520884 - 1042 196155313 - MADE_00490 - sensor protein BarA 489 43.97 0 521065..521205 + 46 196155314 - MADE_00491 - hypothetical protein 490 49.04 +1 521202..523487 + 761 196155315 - MADE_00492 - DNA topoisomerase IV, subunit A 491 45.37 0 523551..524090 + 179 196155316 - MADE_00493 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 492 45.63 0 524100..526262 + 720 196155317 - MADE_00494 - sensory box protein 493 45.61 0 526383..527156 - 257 196155318 - MADE_00495 - hypothetical protein 494 43.65 0 527188..527313 + 41 196155319 - MADE_00497 - hypothetical protein 495 49.52 +1 527305..528774 - 489 196155320 - MADE_00496 - succinylglutamic semialdehyde dehydrogenase 496 47.30 0 528788..529825 - 345 196155321 - MADE_00498 - arginine N-succinyltransferase 497 47.64 0 529846..531054 - 402 196155322 - MADE_00499 - bifunctional N-succinyldiaminopimelate-aminotransferase/ acetylornithine transaminase protein 498 43.65 0 531521..532741 - 406 196155323 - MADE_00500 - putative signal transduction protein 499 46.84 0 532982..533566 - 194 196155324 - MADE_00501 - P-aminobenzoate synthetase, component II 500 46.13 0 533666..534673 - 335 196155325 - MADE_00502 - tryptophanyl-tRNA synthetase 501 44.72 0 534739..535458 - 239 196155326 - MADE_00503 - ribulose-phosphate 3-epimerase 502 43.80 0 535723..536544 + 273 196155327 - MADE_00504 - hypothetical protein 503 47.57 0 536715..537023 + 102 196155328 - MADE_00505 - hypothetical protein 504 42.29 0 537032..537232 + 66 196155329 - MADE_00506 - hypothetical protein 505 43.99 0 537324..538205 - 293 196155330 - MADE_00507 - DNA adenine methylase 506 44.51 0 538432..539943 - 503 196155331 - MADE_00508 - DamX-related protein 507 47.29 0 540115..541167 - 350 196155332 - MADE_00509 - 3-dehydroquinate synthase 508 45.16 0 541214..541729 - 171 196155333 - MADE_00510 - shikimate kinase 509 45.38 0 542000..543643 - 547 196155334 - MADE_00511 - putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase) 510 46.95 0 543775..544266 - 163 196155335 - MADE_00512 - putative Type IV pilus biogenesis protein PilP 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0