IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3848	 44.69	0	4176396..4178156	+	586	196158673	-	MADE_03878	-	Serine/threonine protein kinase
3849	 41.72	0	4178162..4178602	+	146	196158674	-	MADE_03879	-	Hemerythrin HHE cation binding domain protein
3850	 47.97	0	4179096..4179464	+	122	196158675	-	MADE_03880	-	ABC transporter ATPase
3851	 40.71	-1	4179806..4180198	-	130	196158676	-	MADE_03881	-	hypothetical protein
3852	 42.99	0	4180318..4182108	-	596	196158677	-	MADE_03882	-	anaerobic ribonucleoside triphosphate reductase
3853	 43.62	0	4182092..4182538	-	148	196158678	-	MADE_03883	-	Radical enzyme activating protein
3854	 48.83	+1	4182934..4184766	-	610	196158679	-	MADE_03884	-	Glucosamine-fructose-6-phosphate aminotransferase
3855	 49.01	+1	4184769..4185578	-	269	196158680	-	MADE_03885	-	transcriptional regulator, DeoR family protein
3856	 36.36	-2	4185565..4185696	+	43	196158681	-	MADE_03886	-	hypothetical protein
3857	 45.63	0	4185744..4186784	-	346	196158682	-	MADE_03887	-	YvaA
3858	 46.65	0	4187011..4188369	-	452	196158683	-	MADE_03888	-	bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase
3859	 43.80	0	4188637..4190022	+	461	196158684	-	MADE_03889	-	diguanylate cyclase
3860	 49.60	+1	4190026..4190910	-	294	196158685	-	MADE_03890	-	probable transmembrane protein
3861	 46.87	0	4190918..4191412	-	164	196158686	-	MADE_03891	-	Methylated DNA-protein cysteine methyltransferase
3862	 48.04	0	4191414..4192841	-	475	196158687	-	MADE_03892	-	ada regulatory protein
3863	 45.97	0	4193120..4194211	+	363	196158688	-	MADE_03893	-	putative beta-lactamase
3864	 45.10	0	4194252..4196171	-	639	196158689	-	MADE_03894	-	arginine decarboxylase
3865	 42.19	0	4196321..4196749	-	142	196158690	-	MADE_03895	-	arginine decarboxylase
3866	 48.37	+1	4196949..4198298	-	449	196158691	-	MADE_03896	-	NAD(P) transhydrogenase subunit beta
3867	 46.45	0	4198349..4198630	-	93	196158692	-	MADE_03897	-	probable NAD(P) transhydrogenase subunit alpha
3868	 46.98	0	4198633..4199790	-	385	196158693	-	MADE_03898	-	NAD(P) transhydrogenase subunit alpha
3869	 47.72	0	4200363..4203239	+	958	196158694	-	MADE_03899	-	TonB-dependent receptor
3870	 47.99	0	4203324..4204892	+	522	196158695	-	MADE_03900	-	putative tryptophan halogenase
3871	 45.58	0	4204929..4205663	+	244	196158696	-	MADE_03901	-	SapC related protein
3872	 46.58	0	4205642..4206343	+	233	196158697	-	MADE_03902	-	hypothetical protein
3873	 47.78	0	4206562..4209786	-	1074	196158698	-	MADE_03903	-	TonB-dependent receptor
3874	 46.70	0	4209939..4210529	+	196	196158699	-	MADE_03904	-	putative RNA polymerase sigma-70 factor FecI
3875	 45.80	0	4210522..4211628	+	368	196158700	-	MADE_03905	-	putative regulatory protein
3876	 46.59	0	4211805..4212551	+	248	196158701	-	MADE_03906	-	hypothetical protein
3877	 45.67	0	4212660..4212959	-	99	196158702	-	MADE_03907	-	peptidyl-prolyl cis-trans isomerase C
3878	 47.05	0	4213025..4213921	-	298	196158703	-	MADE_03908	-	protoheme IX farnesyltransferase (Heme O synthase)
3879	 41.13	-1	4214119..4214490	-	123	196158704	-	MADE_03909	-	cytochrome o ubiquinol oxidase protein (Ubiquinol oxidase chain D)
3880	 46.76	0	4214490..4215107	-	205	196158705	-	MADE_03910	-	cytochrome o ubiquinol oxidase subunit III (Ubiquinol oxidase chain C)
3881	 46.91	0	4215104..4217092	-	662	196158706	-	MADE_03911	-	Ubiquinol oxidase polypeptide I
3882	 45.33	0	4217095..4218036	-	313	196158707	-	MADE_03912	-	Ubiquinol oxidase polypeptide II (Cytochrome o subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome o ubiquinol oxidase subunit
3883	 45.10	0	4218186..4218593	-	135	196158708	-	MADE_03913	-	hypothetical protein
3884	 36.98	-2	4219137..4219328	+	63	196158709	-	MADE_03914	-	SpoVT/AbrB-like protein
3885	 42.16	0	4219417..4219722	+	101	196158710	-	MADE_03915	-	predicted nucleic acid-binding protein,contains PIN domain
3886	 41.23	-1	4220342..4221151	-	269	196158711	-	MADE_03916	-	hypothetical protein
3887	 40.05	-1	4221554..4222282	+	242	196158712	-	MADE_03917	-	hypothetical protein
3888	 47.17	0	4222663..4224303	-	546	196158713	-	MADE_03918	-	Chaperonin GroEL (HSP60 family) protein
3889	 46.74	0	4224344..4224634	-	96	196158714	-	MADE_03919	-	co-chaperonin GroES
3890	 47.30	0	4224925..4225461	-	178	196158715	-	MADE_03920	-	fxsA protein
3891	 42.22	0	4225675..4225989	+	104	196158716	-	MADE_03922	-	periplasmic divalent cation tolerance protein
3892	 47.94	0	4226013..4227908	+	631	196158717	-	MADE_03921	-	thiol:disulfide interchange protein precursor
3893	 48.30	0	4227910..4228791	+	293	196158718	-	MADE_03923	-	peptidase M23B
3894	 48.98	+1	4229010..4229450	+	146	196158719	-	MADE_03924	-	3-dehydroquinate dehydratase (3-dehydroquinase) (Type II DHQase)
3895	 48.27	0	4229465..4229926	+	153	196158720	-	MADE_03925	-	acetyl-CoA carboxylase
3896	 48.66	+1	4229941..4231284	+	447	196158721	-	MADE_03926	-	acetyl-CoA carboxylase
3897	 46.01	0	4231824..4232762	+	312	196158722	-	MADE_03927	-	hypothetical protein
3898	 44.44	0	4233001..4233441	+	146	196158723	-	MADE_03928	-	hypothetical protein
3899	 43.51	0	4233512..4233796	-	94	196158724	-	MADE_03929	-	hypothetical protein
3900	 45.67	0	4233871..4236018	-	715	196158725	-	MADE_03930	-	DNA polymerase III, epsilon subunit
3901	 44.67	0	4236609..4236758	+	49	196158726	-	MADE_03931	-	hypothetical protein
3902	 46.35	0	4236751..4237380	+	209	196158727	-	MADE_03932	-	hypothetical protein
3903	 47.96	0	4237616..4237909	+	97	196158728	-	MADE_03933	-	high-potential iron sulfur protein isozyme-2, HiPIP-2
3904	 48.32	+1	4238006..4239640	-	544	196158729	-	MADE_03934	-	amidase
3905	 41.74	0	4239781..4240470	-	229	196158730	-	MADE_03935	-	ABC-type amino acid transport/signal transduction system
3906	 48.24	0	4240756..4241634	+	292	196158731	-	MADE_03936	-	methylation of 50S ribosomal subunit protein L11 (ribosomal protein L11 methyltransferase)
3907	 48.15	0	4241983..4242981	+	332	196158732	-	MADE_03937	-	tRNA-dihydrouridine synthase B
3908	 46.26	0	4243012..4243305	+	97	196158733	-	MADE_03938	-	Factor for inversion stimulation Fis, transcriptional activator
3909	 48.34	+1	4243388..4244986	+	532	196158734	-	MADE_03939	-	bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
3910	 46.67	0	4245233..4246087	+	284	196158735	-	MADE_03940	-	predicted O-methyltransferase
3911	 51.82	+2	4246115..4247407	+	430	196158736	-	MADE_03941	-	Phosphoribosylamine-glycine ligase
3912	 46.48	0	4247865..4248617	+	250	196158737	-	MADE_03942	-	uncharacterized FlgJ-related protein
3913	 46.19	0	4248788..4249549	-	253	196158738	-	MADE_03943	-	hypothetical protein
3914	 48.08	0	4249707..4250642	+	311	196158739	-	MADE_03944	-	putative potassium channel protein
3915	 46.69	0	4250753..4251658	+	301	196158740	-	MADE_03945	-	phosphoribulokinase
3916	 47.27	0	4251797..4252915	+	372	196158741	-	MADE_03946	-	hypothetical protein
3917	 50.35	+1	4253129..4253851	+	240	196158742	-	MADE_03947	-	osmolarity response regulator
3918	 45.32	0	4253950..4255284	+	444	196158743	-	MADE_03948	-	osmolarity sensor protein
3919	 45.55	0	4255319..4256497	-	392	196158744	-	MADE_03949	-	osmolarity sensor protein
3920	 48.01	0	4256596..4259061	-	821	196158745	-	MADE_03950	-	glycosyl hydrolase, family 31
3921	 47.60	0	4259305..4260867	-	520	196158746	-	MADE_03951	-	phosphoenolpyruvate carboxykinase
3922	 30.89	-2	4261073..4261195	+	40	196158747	-	MADE_03952	-	hypothetical protein
3923	 45.44	0	4261357..4262256	-	299	196158748	-	MADE_03953	-	Hsp33-like chaperonin
3924	 46.17	0	4262280..4262684	-	134	196158749	-	MADE_03954	-	heat shock protein 15
3925	 46.32	0	4262814..4263737	+	307	196158750	-	MADE_03955	-	general secretion pathway protein C
3926	 46.77	0	4263837..4265882	+	681	196158751	-	MADE_03956	-	general secretion pathway protein D
3927	 49.36	+1	4265884..4267443	+	519	196158752	-	MADE_03957	-	Type II secretory pathway, ATPase PulE-like protein
3928	 47.27	0	4267444..4268670	+	408	196158753	-	MADE_03958	-	general secretion pathway protein F
3929	 47.03	0	4268670..4269107	+	145	196158754	-	MADE_03959	-	general secretion pathway protein G
3930	 47.53	0	4269113..4269739	+	208	196158755	-	MADE_03960	-	putative general secretion pathway protein H precursor
3931	 50.62	+1	4269736..4270215	+	159	196158756	-	MADE_03961	-	general secretion pathway protein I
3932	 47.05	0	4270217..4270843	+	208	196158757	-	MADE_03962	-	general secretion pathway protein J
3933	 46.24	0	4270840..4271916	+	358	196158758	-	MADE_03963	-	putative general secretion pathway protein
3934	 48.83	+1	4271916..4273115	+	399	196158759	-	MADE_03964	-	general secretion pathway protein L
3935	 47.29	0	4273112..4273591	+	159	196158760	-	MADE_03965	-	general secretion pathway protein M
3936	 46.54	0	4273588..4274352	+	254	196158761	-	MADE_03966	-	putative general secretion pathway protein N
3937	 45.89	0	4274444..4275877	+	477	196158762	-	MADE_03967	-	hypothetical protein
3938	 45.86	0	4276020..4277408	-	462	196158763	-	MADE_03968	-	succinate-semialdehyde dehydrogenase
3939	 48.97	+1	4277739..4278320	-	193	196158764	-	MADE_03969	-	hypothetical protein
3940	 45.74	0	4278298..4278966	-	222	196158765	-	MADE_03970	-	HAD-superfamily hydrolase, subfamily IA, variant 3 family protein
3941	 47.16	0	4279083..4279646	+	187	196158766	-	MADE_03971	-	NTP pyrophosphohydrolase, NUDIX family protein
3942	 46.69	0	4279649..4280494	+	281	196158767	-	MADE_03972	-	3-Phosphoadenosine 5-phosphosulfate (PAPS) 3-phosphatase
3943	 44.79	0	4280622..4281206	+	194	196158768	-	MADE_03973	-	YceI family protein
3944	 48.57	+1	4281353..4283347	-	664	196158769	-	MADE_03974	-	putative glucosyltransferase for synthesis of periplasmic glucans
3945	 46.69	0	4283328..4284959	-	543	196158770	-	MADE_03975	-	periplasmic glucans biosynthesis protein
3946	 45.05	0	4285711..4286265	+	184	196158771	-	MADE_03976	-	outer membrane protein, porin family
3947	 45.73	0	4286320..4286553	-	77	196158772	-	MADE_03977	-	hypothetical protein
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.