IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3801	 37.78	-2	4129471..4129560	+	29	196158626	-	MADE_03831	-	hypothetical protein
3802	 43.69	0	4129806..4130249	+	147	196158627	-	MADE_03832	-	hypothetical protein
3803	 44.97	0	4130518..4131342	+	274	196158628	-	MADE_03833	-	putative transcriptional regulator, LysR family protein
3804	 45.38	0	4131469..4132863	-	464	196158629	-	MADE_03834	-	Long-chain fatty acid transport protein
3805	 46.75	0	4133216..4134214	+	332	196158630	-	MADE_03835	-	predicted NADP-dependent oxidoreductase
3806	 45.45	0	4134293..4135357	-	354	196158631	-	MADE_03836	-	diguanylate cyclase
3807	 44.87	0	4135430..4137301	-	623	196158632	-	MADE_03837	-	Signal transduction histidine kinase
3808	 43.92	0	4137375..4138262	-	295	196158633	-	MADE_03838	-	ABC transporter substrate binding protein
3809	 49.34	+1	4138521..4139507	-	328	196158634	-	MADE_03839	-	flavin dependent oxidoreductase
3810	 40.91	-1	4139619..4139750	+	43	196158635	-	MADE_03840	-	hypothetical protein
3811	 42.39	0	4140064..4140582	-	172	196158636	-	MADE_03841	-	CBS domain pair, putative
3812	 46.30	0	4140601..4140816	-	71	196158637	-	MADE_03842	-	hypothetical protein
3813	 46.04	0	4140972..4141766	-	264	196158638	-	MADE_03843	-	Parvulin-like peptidyl-prolyl isomerase
3814	 45.03	0	4141822..4142505	-	227	196158639	-	MADE_03844	-	respiratory nitrate reductase, gamma subunit
3815	 47.91	0	4142508..4143248	-	246	196158640	-	MADE_03845	-	nitrate reductase molybdenum cofactor assembly chaperone
3816	 47.95	0	4143248..4144561	-	437	196158641	-	MADE_03846	-	nitrate reductase, beta subunit
3817	 49.36	+1	4144783..4148208	-	1141	196158642	-	MADE_03847	-	nitrate reductase, alpha subunit
3818	 43.58	0	4148916..4150682	+	588	196158643	-	MADE_03848	-	Signal transduction histidine kinase, nitrate/nitrite-specific
3819	 45.42	0	4150707..4151765	-	352	196158644	-	MADE_03849	-	molybdenum ABC transporter, ATP-binding protein
3820	 45.19	0	4151768..4152442	-	224	196158645	-	MADE_03850	-	molybdenum ABC transporter, permease protein
3821	 43.59	0	4152444..4153223	-	259	196158646	-	MADE_03851	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
3822	 46.07	0	4153294..4154934	-	546	196158647	-	MADE_03852	-	Nitrate/nitrite transporter
3823	 46.48	0	4155216..4155869	+	217	196158648	-	MADE_03853	-	Nitrate/nitrite response regulator (CheY, HTH domain)
3824	 47.65	0	4155872..4157107	+	411	196158649	-	MADE_03854	-	molybdopterin biosynthesis protein
3825	 41.98	0	4157328..4157489	+	53	196158650	-	MADE_03855	-	hypothetical protein
3826	 42.12	0	4157499..4157942	+	147	196158651	-	MADE_03856	-	hypothetical protein
3827	 48.82	+1	4157920..4158384	-	154	196158652	-	MADE_03857	-	molybdenum cofactor biosynthesis protein E
3828	 43.50	0	4158387..4158632	-	81	196158653	-	MADE_03858	-	molybdopterin converting factor, subunit 1
3829	 45.57	0	4158629..4159102	-	157	196158654	-	MADE_03859	-	molybdenum cofactor biosynthesis protein C
3830	 45.79	0	4159120..4159665	-	181	196158655	-	MADE_03860	-	molybdenum cofactor biosynthesis protein B
3831	 45.79	0	4159652..4160245	-	197	196158656	-	MADE_03861	-	molybdopterin guanine dinucleotide synthase
3832	 46.03	0	4160247..4161089	-	280	196158657	-	MADE_03862	-	molybdenum cofactor biosynthesis protein A
3833	 43.78	0	4161471..4162667	-	398	196158658	-	MADE_03863	-	hypothetical protein
3834	 48.03	0	4162885..4163619	+	244	196158659	-	MADE_03864	-	molybdopterin biosynthesis protein MoeB
3835	 41.88	0	4163658..4164242	-	194	196158660	-	MADE_03865	-	putative lipid carrier protein
3836	 43.98	0	4164293..4166095	-	600	196158661	-	MADE_03866	-	thiamine pyrophosphate-binding domain protein
3837	 45.35	0	4166280..4167278	+	332	196158662	-	MADE_03867	-	putative protease
3838	 44.07	0	4167325..4168218	+	297	196158663	-	MADE_03868	-	putative protease
3839	 50.00	+1	4168428..4168571	+	47	196158664	-	MADE_03869	-	acyl-CoA dehydrogenase-like protein
3840	 50.77	+1	4168909..4169103	+	64	196158665	-	MADE_03870	-	probable oxoisovalerate dehydrogenase alpha and beta subunits
3841	 44.20	0	4169148..4169837	-	229	196158666	-	MADE_03871	-	regulator of cell morphogenesis and NO signaling
3842	 46.88	0	4169988..4171508	+	506	196158667	-	MADE_03872	-	anaerobic nitric oxide reductase transcription regulator
3843	 41.00	-1	4171559..4171897	+	112	196158668	-	MADE_03873	-	Invasion gene expression up-regulator, SirB
3844	 45.80	0	4171904..4173106	-	400	196158669	-	MADE_03874	-	Heme/copper membrane protein
3845	 45.68	0	4173112..4174407	-	431	196158670	-	MADE_03875	-	Nitrate/nitrite transporter
3846	 39.58	-1	4174359..4174502	+	47	196158671	-	MADE_03876	-	hypothetical protein
3847	 44.10	0	4174862..4176328	+	488	196158672	-	MADE_03877	-	Nitrate transporter
3848	 44.69	0	4176396..4178156	+	586	196158673	-	MADE_03878	-	Serine/threonine protein kinase
3849	 41.72	0	4178162..4178602	+	146	196158674	-	MADE_03879	-	Hemerythrin HHE cation binding domain protein
3850	 47.97	0	4179096..4179464	+	122	196158675	-	MADE_03880	-	ABC transporter ATPase
3851	 40.71	-1	4179806..4180198	-	130	196158676	-	MADE_03881	-	hypothetical protein
3852	 42.99	0	4180318..4182108	-	596	196158677	-	MADE_03882	-	anaerobic ribonucleoside triphosphate reductase
3853	 43.62	0	4182092..4182538	-	148	196158678	-	MADE_03883	-	Radical enzyme activating protein
3854	 48.83	+1	4182934..4184766	-	610	196158679	-	MADE_03884	-	Glucosamine-fructose-6-phosphate aminotransferase
3855	 49.01	+1	4184769..4185578	-	269	196158680	-	MADE_03885	-	transcriptional regulator, DeoR family protein
3856	 36.36	-2	4185565..4185696	+	43	196158681	-	MADE_03886	-	hypothetical protein
3857	 45.63	0	4185744..4186784	-	346	196158682	-	MADE_03887	-	YvaA
3858	 46.65	0	4187011..4188369	-	452	196158683	-	MADE_03888	-	bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase
3859	 43.80	0	4188637..4190022	+	461	196158684	-	MADE_03889	-	diguanylate cyclase
3860	 49.60	+1	4190026..4190910	-	294	196158685	-	MADE_03890	-	probable transmembrane protein
3861	 46.87	0	4190918..4191412	-	164	196158686	-	MADE_03891	-	Methylated DNA-protein cysteine methyltransferase
3862	 48.04	0	4191414..4192841	-	475	196158687	-	MADE_03892	-	ada regulatory protein
3863	 45.97	0	4193120..4194211	+	363	196158688	-	MADE_03893	-	putative beta-lactamase
3864	 45.10	0	4194252..4196171	-	639	196158689	-	MADE_03894	-	arginine decarboxylase
3865	 42.19	0	4196321..4196749	-	142	196158690	-	MADE_03895	-	arginine decarboxylase
3866	 48.37	+1	4196949..4198298	-	449	196158691	-	MADE_03896	-	NAD(P) transhydrogenase subunit beta
3867	 46.45	0	4198349..4198630	-	93	196158692	-	MADE_03897	-	probable NAD(P) transhydrogenase subunit alpha
3868	 46.98	0	4198633..4199790	-	385	196158693	-	MADE_03898	-	NAD(P) transhydrogenase subunit alpha
3869	 47.72	0	4200363..4203239	+	958	196158694	-	MADE_03899	-	TonB-dependent receptor
3870	 47.99	0	4203324..4204892	+	522	196158695	-	MADE_03900	-	putative tryptophan halogenase
3871	 45.58	0	4204929..4205663	+	244	196158696	-	MADE_03901	-	SapC related protein
3872	 46.58	0	4205642..4206343	+	233	196158697	-	MADE_03902	-	hypothetical protein
3873	 47.78	0	4206562..4209786	-	1074	196158698	-	MADE_03903	-	TonB-dependent receptor
3874	 46.70	0	4209939..4210529	+	196	196158699	-	MADE_03904	-	putative RNA polymerase sigma-70 factor FecI
3875	 45.80	0	4210522..4211628	+	368	196158700	-	MADE_03905	-	putative regulatory protein
3876	 46.59	0	4211805..4212551	+	248	196158701	-	MADE_03906	-	hypothetical protein
3877	 45.67	0	4212660..4212959	-	99	196158702	-	MADE_03907	-	peptidyl-prolyl cis-trans isomerase C
3878	 47.05	0	4213025..4213921	-	298	196158703	-	MADE_03908	-	protoheme IX farnesyltransferase (Heme O synthase)
3879	 41.13	-1	4214119..4214490	-	123	196158704	-	MADE_03909	-	cytochrome o ubiquinol oxidase protein (Ubiquinol oxidase chain D)
3880	 46.76	0	4214490..4215107	-	205	196158705	-	MADE_03910	-	cytochrome o ubiquinol oxidase subunit III (Ubiquinol oxidase chain C)
3881	 46.91	0	4215104..4217092	-	662	196158706	-	MADE_03911	-	Ubiquinol oxidase polypeptide I
3882	 45.33	0	4217095..4218036	-	313	196158707	-	MADE_03912	-	Ubiquinol oxidase polypeptide II (Cytochrome o subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome o ubiquinol oxidase subunit
3883	 45.10	0	4218186..4218593	-	135	196158708	-	MADE_03913	-	hypothetical protein
3884	 36.98	-2	4219137..4219328	+	63	196158709	-	MADE_03914	-	SpoVT/AbrB-like protein
3885	 42.16	0	4219417..4219722	+	101	196158710	-	MADE_03915	-	predicted nucleic acid-binding protein,contains PIN domain
3886	 41.23	-1	4220342..4221151	-	269	196158711	-	MADE_03916	-	hypothetical protein
3887	 40.05	-1	4221554..4222282	+	242	196158712	-	MADE_03917	-	hypothetical protein
3888	 47.17	0	4222663..4224303	-	546	196158713	-	MADE_03918	-	Chaperonin GroEL (HSP60 family) protein
3889	 46.74	0	4224344..4224634	-	96	196158714	-	MADE_03919	-	co-chaperonin GroES
3890	 47.30	0	4224925..4225461	-	178	196158715	-	MADE_03920	-	fxsA protein
3891	 42.22	0	4225675..4225989	+	104	196158716	-	MADE_03922	-	periplasmic divalent cation tolerance protein
3892	 47.94	0	4226013..4227908	+	631	196158717	-	MADE_03921	-	thiol:disulfide interchange protein precursor
3893	 48.30	0	4227910..4228791	+	293	196158718	-	MADE_03923	-	peptidase M23B
3894	 48.98	+1	4229010..4229450	+	146	196158719	-	MADE_03924	-	3-dehydroquinate dehydratase (3-dehydroquinase) (Type II DHQase)
3895	 48.27	0	4229465..4229926	+	153	196158720	-	MADE_03925	-	acetyl-CoA carboxylase
3896	 48.66	+1	4229941..4231284	+	447	196158721	-	MADE_03926	-	acetyl-CoA carboxylase
3897	 46.01	0	4231824..4232762	+	312	196158722	-	MADE_03927	-	hypothetical protein
3898	 44.44	0	4233001..4233441	+	146	196158723	-	MADE_03928	-	hypothetical protein
3899	 43.51	0	4233512..4233796	-	94	196158724	-	MADE_03929	-	hypothetical protein
3900	 45.67	0	4233871..4236018	-	715	196158725	-	MADE_03930	-	DNA polymerase III, epsilon subunit
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.