version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3701 48.01 0 4028594..4029772 - 392 196158526 - MADE_03729 - GTPase Obg 3702 44.57 0 4030032..4030289 - 85 196158527 - MADE_03730 - 50S ribosomal protein L27 3703 47.44 0 4030305..4030616 - 103 196158528 - MADE_03731 - 50S ribosomal protein L21 3704 45.74 0 4031322..4032296 + 324 196158529 - MADE_03732 - Geranylgeranyl pyrophosphate synthase 3705 49.37 +1 4032501..4033217 - 238 196158530 - MADE_03733 - ZIP zinc transporter family protein 3706 47.22 0 4033518..4034864 - 448 196158531 - MADE_03734 - Xaa-Pro proline dipeptidase 3707 46.33 0 4034981..4036711 - 576 196158532 - MADE_03735 - putative soluble lytic murein transglycosylase 3708 47.65 0 4037532..4039682 + 716 196158533 - MADE_03736 - fatty oxidation complex, alpha subunit 3709 49.83 +1 4039701..4040864 + 387 196158534 - MADE_03737 - fatty oxidation complex, beta subunit 3710 42.93 0 4040942..4041910 - 322 196158535 - MADE_03738 - putative integrase 3711 37.36 -2 4042203..4042649 + 148 196158536 - MADE_03739 - hypothetical protein 3712 45.30 0 4042627..4042743 + 38 196158537 - MADE_03740 - hypothetical protein 3713 44.44 0 4043108..4043233 + 41 196158538 - MADE_03741 - hypothetical protein 3714 36.67 -2 4043436..4043555 + 39 196158539 - MADE_03742 - hypothetical protein 3715 38.12 -1 4043595..4044095 + 166 196158540 - MADE_03743 - hypothetical protein 3716 42.87 0 4045136..4046173 - 345 196158541 - MADE_03744 - ISCps1, transposase 3717 34.51 -2 4046355..4046693 + 112 196158542 - MADE_03745 - FOG: Transposon-encoded proteins with TYA, reverse transcriptase,integrase domains in various combinations (ISS) 3718 38.64 -1 4046831..4047169 + 112 196158543 - MADE_03746 - hypothetical protein 3719 37.98 -2 4047215..4047709 + 164 196158544 - MADE_03747 - hypothetical protein 3720 36.36 -2 4047826..4048056 + 76 196158545 - MADE_03748 - hypothetical protein 3721 43.65 0 4048153..4048278 + 41 196158546 - MADE_03749 - hypothetical protein 3722 42.11 0 4048373..4048543 + 56 196158547 - MADE_03750 - hypothetical protein 3723 47.46 0 4048572..4049399 - 275 196158548 - MADE_03751 - Integrase 3724 44.90 0 4049447..4049740 - 97 196158549 - MADE_03752 - transposase, IS911 3725 33.02 -2 4049883..4050197 + 104 196158550 - MADE_03753 - hypothetical protein 3726 51.57 +1 4050708..4050866 + 52 196158551 - MADE_03754 - hypothetical protein 3727 32.50 -2 4050927..4051046 - 39 196158552 - MADE_03755 - hypothetical protein 3728 39.47 -1 4051276..4051389 + 37 196158553 - MADE_03756 - hypothetical protein 3729 49.17 +1 4051601..4051720 - 39 196158554 - MADE_03757 - hypothetical protein 3730 40.58 -1 4051849..4052262 + 137 196158555 - MADE_03758 - transcriptional regulator, XRE family 3731 40.79 -1 4052308..4052736 + 142 196158556 - MADE_03759 - hypothetical protein 3732 38.04 -2 4052886..4053671 + 261 196158557 - MADE_03760 - hypothetical protein 3733 37.70 -2 4053786..4054334 + 182 196158558 - MADE_03761 - hypothetical protein 3734 40.25 -1 4054452..4055159 + 235 196158559 - MADE_03762 - hypothetical protein 3735 40.22 -1 4055831..4056193 + 120 196158560 - MADE_03763 - putative orphan protein 3736 41.05 -1 4056312..4056674 + 120 196158561 - MADE_03764 - hypothetical protein 3737 37.50 -2 4057169..4057768 + 199 196158562 - MADE_03765 - hypothetical protein 3738 42.87 0 4058030..4059067 - 345 196158563 - MADE_03766 - ISCps1, transposase 3739 39.24 -1 4059875..4060111 + 78 196158564 - MADE_03767 - hypothetical protein 3740 47.79 0 4061341..4062495 - 384 196158565 - MADE_03768 - replicative DNA helicase 3741 43.70 0 4062701..4063240 - 179 196158566 - MADE_03769 - hypothetical protein 3742 45.51 0 4063438..4064406 - 322 196158567 - MADE_03770 - hypothetical protein 3743 47.17 0 4064465..4064977 - 170 196158568 - MADE_03771 - putative orphan protein 3744 44.93 0 4064970..4065581 - 203 196158569 - MADE_03772 - putative RNA polymerase sigma factor 3745 47.75 0 4065658..4066302 + 214 196158570 - MADE_03773 - MOSC domain containing protein 3746 40.26 -1 4066289..4066591 - 100 196158571 - MADE_03774 - hypothetical protein 3747 45.30 0 4066816..4067868 - 350 196158572 - MADE_03775 - putative hydrolase 3748 46.14 0 4068219..4068671 - 150 196158573 - MADE_03776 - 50S ribosomal subunit protein L9 3749 44.74 0 4068698..4068925 - 75 196158574 - MADE_03777 - 30S ribosomal protein S18 3750 46.27 0 4068937..4069338 - 133 196158575 - MADE_03778 - 30S ribosomal protein S6 3751 42.34 0 4069480..4070712 - 410 196158576 - MADE_03779 - GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal 3752 40.97 -1 4070962..4071249 + 95 196158577 - MADE_03780 - YebG family protein 3753 44.31 0 4071446..4072210 + 254 196158578 - MADE_03781 - ABC transporter, ATP-binding protein 3754 43.92 0 4072210..4073550 + 446 196158579 - MADE_03782 - putative permease 3755 47.41 0 4073574..4075157 - 527 196158580 - MADE_03783 - Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins) 3756 42.50 0 4075313..4076818 - 501 196158581 - MADE_03784 - sensor histidine kinase 3757 45.43 0 4076898..4077980 - 360 196158582 - MADE_03785 - methyl-accepting chemotaxis protein 3758 44.75 0 4078276..4079028 + 250 196158583 - MADE_03786 - putative integral membrane protein 3759 43.51 0 4079075..4080037 - 320 196158584 - MADE_03787 - Co/Zn/Cd efflux system component 3760 48.25 0 4083178..4086126 + 982 196158585 - MADE_03790 - TonB-dependent receptor 3761 49.85 +1 4086170..4087483 + 437 196158586 - MADE_03791 - glycosyl hydrolase, family 16 3762 48.25 0 4087551..4090499 + 982 196158587 - MADE_03792 - TonB-dependent receptor 3763 47.58 0 4090676..4092163 - 495 196158588 - MADE_03793 - Na+/H+ antiporter, NhaC family protein 3764 47.40 0 4092409..4094961 - 850 196158589 - MADE_03794 - glucan 1,4-beta-glucosidase 3765 46.16 0 4094974..4096236 - 420 196158590 - MADE_03795 - glucose/galactose transporter family protein 3766 25.83 -2 4096268..4096387 + 39 196158591 - MADE_03796 - hypothetical protein 3767 45.25 0 4096443..4097801 + 452 196158592 - MADE_03797 - beta-glucosidase 3768 46.41 0 4097822..4098823 + 333 196158593 - MADE_03798 - galactose operon repressor 3769 46.98 0 4098825..4100399 + 524 196158594 - MADE_03799 - MFS transporter 3770 47.90 0 4100389..4102056 - 555 196158595 - MADE_03800 - MdlB protein 3771 46.68 0 4102049..4103749 - 566 196158596 - MADE_03801 - ABC transporter ATP-binding protein 3772 43.86 0 4104034..4104147 - 37 196158597 - MADE_03802 - cyd operon protein YbgTEB3 3773 46.35 0 4104158..4105294 - 378 196158598 - MADE_03803 - Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II) 3774 44.97 0 4105291..4106871 - 526 196158599 - MADE_03804 - putative cytochrome d ubiquinol oxidase, subunit I 3775 49.25 +1 4107242..4107844 - 200 196158600 - MADE_03805 - cytochrome c family protein, putative 3776 46.33 0 4107996..4109318 + 440 196158601 - MADE_03806 - sigma-54 dependent transcriptional regulator 3777 51.22 +1 4109423..4109791 + 122 196158602 - MADE_03807 - hypothetical protein 3778 46.41 0 4109862..4111979 + 705 196158603 - MADE_03808 - TonB-dependent receptor 3779 47.99 0 4112063..4112833 - 256 196158604 - MADE_03809 - putative orphan protein 3780 35.96 -2 4112859..4113125 + 88 196158605 - MADE_03810 - hypothetical protein 3781 46.67 0 4113339..4113458 - 39 196158606 - MADE_03811 - hypothetical protein 3782 47.79 0 4113446..4113853 + 135 196158607 - MADE_03812 - Ketosteroid isomerase like protein 3783 48.25 0 4114067..4114864 + 265 196158608 - MADE_03813 - acid phosphatase 3784 41.26 -1 4115166..4115594 + 142 196158609 - MADE_03814 - diguanylate cyclase 3785 47.26 0 4116320..4117540 + 406 196158610 - MADE_03815 - putative mfs transporter 3786 47.42 0 4117911..4118684 + 257 196158611 - MADE_03816 - putative siderophore utilization protein 3787 40.10 -1 4118879..4119070 + 63 196158612 - MADE_03817 - protein YjbJ 3788 45.19 0 4119271..4119405 - 44 196158613 - MADE_03818 - hypothetical protein 3789 48.95 +1 4119762..4120478 - 238 196158614 - MADE_03819 - hypothetical protein 3790 44.04 0 4120604..4121257 - 217 196158615 - MADE_03820 - hypothetical protein 3791 42.69 0 4121408..4121824 - 138 196158616 - MADE_03821 - hypothetical protein 3792 45.61 0 4121850..4121963 - 37 196158617 - MADE_03822 - hypothetical protein 3793 46.95 0 4121969..4122901 + 310 196158618 - MADE_03823 - Alpha/beta hydrolase fold protein 3794 42.14 0 4122919..4123554 - 211 196158619 - MADE_03824 - hypothetical protein 3795 44.86 0 4123595..4124158 - 187 196158620 - MADE_03825 - CBS domain protein 3796 35.71 -2 4124472..4124597 + 41 196158621 - MADE_03826 - hypothetical protein 3797 44.21 0 4124758..4125327 + 189 196158622 - MADE_03827 - putative cytochrome b561 3798 43.74 0 4125351..4125917 + 188 196158623 - MADE_03828 - YceI 3799 46.87 0 4125984..4127276 - 430 196158624 - MADE_03829 - Respiratory NADH dehydrogenase II 3800 46.75 0 4127457..4129469 - 670 196158625 - MADE_03830 - putative TonB-dependent receptor protein 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0