version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3636 42.14 0 3954137..3954295 + 52 196158461 - MADE_03664 - hypothetical protein 3637 47.28 0 3954490..3955830 + 446 196158462 - MADE_03665 - nitrate-and nitrite-responsive positive regulator 3638 48.10 0 3955903..3956532 - 209 196158463 - MADE_03666 - hypothetical protein 3639 45.60 0 3956535..3957227 - 230 196158464 - MADE_03667 - phosphoesterase PA-phosphatase related 3640 49.84 +1 3957260..3957580 - 106 196158465 - MADE_03668 - BolA protein 3641 44.39 0 3957588..3958229 - 213 196158466 - MADE_03669 - alkylated DNA repair protein 3642 45.66 0 3958563..3959795 + 410 196158467 - MADE_03670 - putative ribosomal RNA small subunit methyltransferase D 3643 46.31 0 3959843..3960451 + 202 196158468 - MADE_03671 - peptidyl-prolyl cis-trans isomerase A 3644 45.93 0 3960550..3961779 - 409 196158469 - MADE_03672 - dipeptidase 3645 45.08 0 3961780..3964086 - 768 196158470 - MADE_03673 - TonB-dependent receptor 3646 48.00 0 3964548..3965072 - 174 196158471 - MADE_03674 - Acetyltransferase, including N-acetylase of ribosomal protein 3647 49.52 +1 3965143..3965766 - 207 196158472 - MADE_03675 - hypothetical protein 3648 48.38 +1 3965873..3968338 - 821 196158473 - MADE_03676 - TonB-dependent receptor 3649 45.30 0 3968503..3969471 - 322 196158474 - MADE_03677 - lysyl-tRNA synthetase 3650 46.14 0 3969574..3970143 - 189 196158475 - MADE_03678 - elongation factor P (EF-P) 3651 46.20 0 3970180..3971205 + 341 196158476 - MADE_03679 - lysine 2,3-aminomutase YodO family protein 3652 53.17 +2 3971207..3971332 - 41 196158477 - MADE_03680 - hypothetical protein 3653 43.54 0 3971653..3971985 + 110 196158478 - MADE_03681 - hypothetical protein 3654 49.51 +1 3972115..3973350 - 411 196158479 - MADE_03682 - hypothetical protein 3655 45.06 0 3973533..3974231 - 232 196158480 - MADE_03683 - putative enzymatic protein 3656 45.13 0 3974474..3975151 + 225 196158481 - MADE_03684 - hypothetical protein 3657 48.58 +1 3975183..3977078 - 631 196158482 - MADE_03685 - DNA topoisomerase IV subunit B 3658 44.85 0 3977197..3977778 - 193 196158483 - MADE_03686 - predicted esterase 3659 47.01 0 3977808..3978611 - 267 196158484 - MADE_03687 - 3,5-cyclic-nucleotide phosphodiesterase 3660 47.01 0 3978608..3978958 - 116 196158485 - MADE_03688 - putative cytoplasmic protein 3661 44.80 0 3979045..3979611 - 188 196158486 - MADE_03689 - ADP-ribose pyrophosphatase 3662 48.81 +1 3979968..3981356 + 462 196158487 - MADE_03690 - outer membrane channel precursor protein 3663 42.22 0 3981821..3982675 + 284 196158488 - MADE_03691 - Kef-type K+ transport system, NAD-binding component 3664 45.44 0 3982866..3985640 - 924 196158489 - MADE_03692 - TPR domain protein 3665 47.91 0 3985947..3987716 + 589 196158490 - MADE_03693 - ATP-dependent RNA helicase 3666 47.78 0 3987792..3989231 + 479 196158491 - MADE_03694 - uroporphyrin-III C-methyltransferase 3667 48.26 0 3989374..3990324 + 316 196158492 - MADE_03695 - hypothetical protein 3668 47.24 0 3990458..3991744 - 428 196158493 - MADE_03696 - PhoH family protein 3669 44.67 0 3992159..3994186 - 675 196158494 - MADE_03697 - ABC-type sugar transport system, periplasmic component 3670 44.22 0 3994374..3994520 + 48 196158495 - MADE_03698 - hypothetical protein 3671 48.87 +1 3994681..3997524 + 947 196158496 - MADE_03699 - RNA polymerase-associated protein HepA 3672 49.23 +1 3997564..3998280 + 238 196158497 - MADE_03700 - pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity 3673 45.49 0 3998500..3999330 + 276 196158498 - MADE_03701 - hypothetical protein 3674 42.86 0 3999588..3999797 + 69 196158499 - MADE_03702 - hypothetical protein 3675 46.03 0 3999895..4001241 + 448 196158500 - MADE_03703 - putative muropeptide transport protein (mFS family), highly conserved in gamma-proteobacteria 3676 44.99 0 4001270..4002247 - 325 196158501 - MADE_03704 - GGDEF domain protein 3677 46.76 0 4002244..4003263 - 339 196158502 - MADE_03705 - response regulator 3678 44.24 0 4003324..4004157 - 277 196158503 - MADE_03706 - thymidylate synthase 3679 47.14 0 4004176..4004979 - 267 196158504 - MADE_03707 - prolipoprotein diacylglyceryl transferase 3680 47.09 0 4004984..4005790 - 268 196158505 - MADE_03708 - hypothetical protein 3681 47.35 0 4005796..4008114 - 772 196158506 - MADE_03709 - phosphoenolpyruvate-protein phosphotransferase PtsP 3682 45.60 0 4008359..4008847 - 162 196158507 - MADE_03710 - dinucleoside polyphosphate hydrolase 3683 51.92 +2 4009015..4009692 + 225 196158508 - MADE_03711 - methyl-directed mismatch repair 3684 45.52 0 4009785..4010867 - 360 196158509 - MADE_03712 - DNA mismatch repair protein 3685 46.88 0 4010928..4012433 - 501 196158510 - MADE_03713 - hypothetical protein 3686 44.79 0 4012432..4013208 + 258 196158511 - MADE_03714 - SH3, type 3 3687 44.05 0 4013356..4013523 - 55 196158512 - MADE_03715 - probable two-component sensor 3688 49.08 +1 4013773..4017570 - 1265 196158513 - MADE_03716 - bifunctional putA protein 3689 35.29 -2 4017838..4017990 - 50 196158514 - MADE_03717 - hypothetical protein 3690 46.58 0 4018058..4019680 + 540 196158515 - MADE_03718 - putative chemotaxis sensory protein 3691 42.60 0 4020094..4021809 + 571 196158516 - MADE_03719 - hypothetical protein 3692 42.96 0 4021909..4022199 + 96 196158517 - MADE_03720 - septum formation initiator family protein 3693 50.28 +1 4022196..4022921 + 241 196158518 - MADE_03721 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3694 49.37 +1 4022936..4023409 + 157 196158519 - MADE_03722 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3695 47.15 0 4023406..4024491 + 361 196158520 - MADE_03723 - Pseudouridylate synthase 3696 46.07 0 4024570..4025205 + 211 196158521 - MADE_03724 - protein-L-isoaspartate O-methyltransferase 3697 47.64 0 4025229..4025780 + 183 196158522 - MADE_03725 - membrane protein; member of the DedA of proteins 3698 43.68 0 4025782..4026651 + 289 196158523 - MADE_03726 - hypothetical lipoprotein NlpD 3699 45.22 0 4026724..4027716 + 330 196158524 - MADE_03727 - sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase 3700 44.44 0 4027895..4028398 - 167 196158525 - MADE_03728 - dihydrofolate reductase type I, trimethoprim resistance 3701 48.01 0 4028594..4029772 - 392 196158526 - MADE_03729 - GTPase Obg 3702 44.57 0 4030032..4030289 - 85 196158527 - MADE_03730 - 50S ribosomal protein L27 3703 47.44 0 4030305..4030616 - 103 196158528 - MADE_03731 - 50S ribosomal protein L21 3704 45.74 0 4031322..4032296 + 324 196158529 - MADE_03732 - Geranylgeranyl pyrophosphate synthase 3705 49.37 +1 4032501..4033217 - 238 196158530 - MADE_03733 - ZIP zinc transporter family protein 3706 47.22 0 4033518..4034864 - 448 196158531 - MADE_03734 - Xaa-Pro proline dipeptidase 3707 46.33 0 4034981..4036711 - 576 196158532 - MADE_03735 - putative soluble lytic murein transglycosylase 3708 47.65 0 4037532..4039682 + 716 196158533 - MADE_03736 - fatty oxidation complex, alpha subunit 3709 49.83 +1 4039701..4040864 + 387 196158534 - MADE_03737 - fatty oxidation complex, beta subunit 3710 42.93 0 4040942..4041910 - 322 196158535 - MADE_03738 - putative integrase 3711 37.36 -2 4042203..4042649 + 148 196158536 - MADE_03739 - hypothetical protein 3712 45.30 0 4042627..4042743 + 38 196158537 - MADE_03740 - hypothetical protein 3713 44.44 0 4043108..4043233 + 41 196158538 - MADE_03741 - hypothetical protein 3714 36.67 -2 4043436..4043555 + 39 196158539 - MADE_03742 - hypothetical protein 3715 38.12 -1 4043595..4044095 + 166 196158540 - MADE_03743 - hypothetical protein 3716 42.87 0 4045136..4046173 - 345 196158541 - MADE_03744 - ISCps1, transposase 3717 34.51 -2 4046355..4046693 + 112 196158542 - MADE_03745 - FOG: Transposon-encoded proteins with TYA, reverse transcriptase,integrase domains in various combinations (ISS) 3718 38.64 -1 4046831..4047169 + 112 196158543 - MADE_03746 - hypothetical protein 3719 37.98 -2 4047215..4047709 + 164 196158544 - MADE_03747 - hypothetical protein 3720 36.36 -2 4047826..4048056 + 76 196158545 - MADE_03748 - hypothetical protein 3721 43.65 0 4048153..4048278 + 41 196158546 - MADE_03749 - hypothetical protein 3722 42.11 0 4048373..4048543 + 56 196158547 - MADE_03750 - hypothetical protein 3723 47.46 0 4048572..4049399 - 275 196158548 - MADE_03751 - Integrase 3724 44.90 0 4049447..4049740 - 97 196158549 - MADE_03752 - transposase, IS911 3725 33.02 -2 4049883..4050197 + 104 196158550 - MADE_03753 - hypothetical protein 3726 51.57 +1 4050708..4050866 + 52 196158551 - MADE_03754 - hypothetical protein 3727 32.50 -2 4050927..4051046 - 39 196158552 - MADE_03755 - hypothetical protein 3728 39.47 -1 4051276..4051389 + 37 196158553 - MADE_03756 - hypothetical protein 3729 49.17 +1 4051601..4051720 - 39 196158554 - MADE_03757 - hypothetical protein 3730 40.58 -1 4051849..4052262 + 137 196158555 - MADE_03758 - transcriptional regulator, XRE family 3731 40.79 -1 4052308..4052736 + 142 196158556 - MADE_03759 - hypothetical protein 3732 38.04 -2 4052886..4053671 + 261 196158557 - MADE_03760 - hypothetical protein 3733 37.70 -2 4053786..4054334 + 182 196158558 - MADE_03761 - hypothetical protein 3734 40.25 -1 4054452..4055159 + 235 196158559 - MADE_03762 - hypothetical protein 3735 40.22 -1 4055831..4056193 + 120 196158560 - MADE_03763 - putative orphan protein 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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