version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3576 35.00 -2 3891330..3891449 - 39 196158401 - MADE_03604 - hypothetical protein 3577 45.43 0 3891443..3891814 - 123 196158402 - MADE_03605 - hypothetical protein 3578 40.44 -1 3892692..3893591 + 299 196158403 - MADE_03606 - putative orphan protein 3579 37.50 -2 3893967..3894230 - 87 196158404 - MADE_03607 - hypothetical protein 3580 38.15 -1 3894613..3895443 - 276 196158405 - MADE_03608 - hypothetical protein 3581 44.37 0 3895467..3898892 - 1141 196158406 - MADE_03609 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicase 3582 40.44 -1 3898916..3899998 - 360 196158407 - MADE_03610 - type I site-specific deoxyribonuclease 3583 44.44 0 3900070..3901716 - 548 196158408 - MADE_03611 - Type I restriction-modification system methyltransferase subunit 3584 37.46 -2 3901794..3902909 - 371 196158409 - MADE_03612 - Plasmid maintenance system antidote protein 3585 48.85 +1 3903447..3903620 + 57 196158410 - MADE_03613 - hypothetical protein 3586 39.61 -1 3904128..3905306 + 392 196158411 - MADE_03614 - uba/thif-type NAD/fad binding fold protein 3587 37.78 -2 3905699..3905833 - 44 196158412 - MADE_03615 - putative orphan protein 3588 40.00 -1 3906144..3906398 - 84 196158413 - MADE_03616 - hypothetical protein 3589 43.41 0 3907250..3907795 + 181 196158414 - MADE_03617 - hypothetical protein 3590 42.03 0 3907954..3908091 - 45 196158415 - MADE_03618 - hypothetical protein 3591 39.13 -1 3908091..3908228 - 45 196158416 - MADE_03619 - hypothetical protein 3592 41.56 0 3908307..3909437 + 376 196158417 - MADE_03620 - hypothetical protein 3593 41.37 -1 3910324..3910572 - 82 196158418 - MADE_03621 - hypothetical protein 3594 41.34 -1 3910758..3911444 - 228 196158419 - MADE_03622 - hypothetical protein 3595 43.32 0 3911727..3912317 + 196 196158420 - MADE_03623 - hypothetical protein 3596 43.71 0 3912321..3914084 + 587 196158421 - MADE_03624 - OmpA/MotB 3597 41.15 -1 3914100..3914585 + 161 196158422 - MADE_03625 - small GTP-binding protein 3598 43.00 0 3914595..3916715 + 706 196158423 - MADE_03626 - sensory box-containing diguanylate cyclase, putative 3599 45.55 0 3916818..3917660 - 280 196158424 - MADE_03627 - Carboxylesterase 3600 43.50 0 3917774..3918688 + 304 196158425 - MADE_03628 - Acyltransferase family protein (Phospholipid/glycerol acyltransferase) 3601 42.17 0 3918685..3919578 + 297 196158426 - MADE_03629 - phospholipid/glycerol acyltransferase 3602 45.28 0 3919582..3921012 + 476 196158427 - MADE_03630 - mechanosensitive ion channel 3603 43.75 0 3921082..3921273 - 63 196158428 - MADE_03631 - hypothetical protein 3604 44.53 0 3921609..3922421 + 270 196158429 - MADE_03632 - putative secreted protein 3605 48.59 +1 3922652..3923464 + 270 196158430 - MADE_03633 - hypothetical enzyme of sugar metabolism 3606 44.73 0 3923533..3924954 - 473 196158431 - MADE_03634 - putative sodium-dependent transporter 3607 41.33 -1 3925017..3925166 + 49 196158432 - MADE_03635 - hypothetical protein 3608 46.69 0 3925223..3925948 - 241 196158433 - MADE_03636 - oxidoreductase, short-chain dehydrogenase/reductase family protein 3609 48.48 +1 3925938..3926333 - 131 196158434 - MADE_03637 - Potential redox protein 3610 46.34 0 3926595..3927140 + 181 196158435 - MADE_03638 - peptide methionine sulfoxide reductase MsrA 3611 45.90 0 3927238..3928359 - 373 196158436 - MADE_03639 - hypothetical protein 3612 47.58 0 3928641..3929342 + 233 196158437 - MADE_03640 - hypothetical protein 3613 44.83 0 3929366..3930478 + 370 196158438 - MADE_03641 - peptide methionine sulfoxide reductase 3614 44.69 0 3930496..3931032 + 178 196158439 - MADE_03642 - flavodoxin 3615 45.37 0 3931058..3931846 + 262 196158440 - MADE_03643 - hypothetical protein 3616 49.57 +1 3931955..3932071 + 38 196158441 - MADE_03644 - hypothetical protein 3617 48.35 +1 3932162..3932767 + 201 196158442 - MADE_03645 - aminoglycoside phosphotransferase 3618 46.54 0 3932989..3933147 + 52 196158443 - MADE_03646 - hypothetical protein 3619 49.35 +1 3933224..3935146 + 640 196158444 - MADE_03647 - TonB-dependent receptor 3620 42.65 0 3935581..3936213 + 210 196158445 - MADE_03648 - thiol:disulfide interchange protein DsbA 3621 45.35 0 3936290..3936880 + 196 196158446 - MADE_03649 - predicted hydrolase 3622 46.74 0 3936970..3938118 - 382 196158447 - MADE_03650 - putative lipoprotein 3623 45.75 0 3938117..3938269 + 50 196158448 - MADE_03651 - hypothetical protein 3624 45.27 0 3938321..3939208 - 295 196158449 - MADE_03652 - nitrate transport ATP-binding subunits C and D 3625 47.43 0 3939225..3940274 - 349 196158450 - MADE_03653 - putative nitrate ABC transporter, permease protein 3626 48.30 0 3940310..3941719 - 469 196158451 - MADE_03654 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component 3627 44.57 0 3942276..3943592 - 438 196158452 - MADE_03655 - putative chemotaxis transducer 3628 45.68 0 3943777..3944772 - 331 196158453 - MADE_03656 - glycosyl transferase, family 3 3629 49.26 +1 3944756..3945697 - 313 196158454 - MADE_03657 - multifunctional protein 3630 48.25 0 3945734..3948562 - 942 196158455 - MADE_03658 - nitrate reductase 3631 45.43 0 3948621..3948992 - 123 196158456 - MADE_03659 - putative nitrate reductase (electron transfer subunit) AND putative nitrite reductase (small subunit) 3632 49.22 +1 3949029..3951578 - 849 196158457 - MADE_03660 - nitrite reductase 3633 48.34 +1 3951906..3953471 - 521 196158458 - MADE_03661 - Sulfate permease family protein 3634 39.89 -1 3953581..3953763 - 60 196158459 - MADE_03662 - hypothetical protein 3635 44.10 0 3953877..3954164 + 95 196158460 - MADE_03663 - hypothetical protein 3636 42.14 0 3954137..3954295 + 52 196158461 - MADE_03664 - hypothetical protein 3637 47.28 0 3954490..3955830 + 446 196158462 - MADE_03665 - nitrate-and nitrite-responsive positive regulator 3638 48.10 0 3955903..3956532 - 209 196158463 - MADE_03666 - hypothetical protein 3639 45.60 0 3956535..3957227 - 230 196158464 - MADE_03667 - phosphoesterase PA-phosphatase related 3640 49.84 +1 3957260..3957580 - 106 196158465 - MADE_03668 - BolA protein 3641 44.39 0 3957588..3958229 - 213 196158466 - MADE_03669 - alkylated DNA repair protein 3642 45.66 0 3958563..3959795 + 410 196158467 - MADE_03670 - putative ribosomal RNA small subunit methyltransferase D 3643 46.31 0 3959843..3960451 + 202 196158468 - MADE_03671 - peptidyl-prolyl cis-trans isomerase A 3644 45.93 0 3960550..3961779 - 409 196158469 - MADE_03672 - dipeptidase 3645 45.08 0 3961780..3964086 - 768 196158470 - MADE_03673 - TonB-dependent receptor 3646 48.00 0 3964548..3965072 - 174 196158471 - MADE_03674 - Acetyltransferase, including N-acetylase of ribosomal protein 3647 49.52 +1 3965143..3965766 - 207 196158472 - MADE_03675 - hypothetical protein 3648 48.38 +1 3965873..3968338 - 821 196158473 - MADE_03676 - TonB-dependent receptor 3649 45.30 0 3968503..3969471 - 322 196158474 - MADE_03677 - lysyl-tRNA synthetase 3650 46.14 0 3969574..3970143 - 189 196158475 - MADE_03678 - elongation factor P (EF-P) 3651 46.20 0 3970180..3971205 + 341 196158476 - MADE_03679 - lysine 2,3-aminomutase YodO family protein 3652 53.17 +2 3971207..3971332 - 41 196158477 - MADE_03680 - hypothetical protein 3653 43.54 0 3971653..3971985 + 110 196158478 - MADE_03681 - hypothetical protein 3654 49.51 +1 3972115..3973350 - 411 196158479 - MADE_03682 - hypothetical protein 3655 45.06 0 3973533..3974231 - 232 196158480 - MADE_03683 - putative enzymatic protein 3656 45.13 0 3974474..3975151 + 225 196158481 - MADE_03684 - hypothetical protein 3657 48.58 +1 3975183..3977078 - 631 196158482 - MADE_03685 - DNA topoisomerase IV subunit B 3658 44.85 0 3977197..3977778 - 193 196158483 - MADE_03686 - predicted esterase 3659 47.01 0 3977808..3978611 - 267 196158484 - MADE_03687 - 3,5-cyclic-nucleotide phosphodiesterase 3660 47.01 0 3978608..3978958 - 116 196158485 - MADE_03688 - putative cytoplasmic protein 3661 44.80 0 3979045..3979611 - 188 196158486 - MADE_03689 - ADP-ribose pyrophosphatase 3662 48.81 +1 3979968..3981356 + 462 196158487 - MADE_03690 - outer membrane channel precursor protein 3663 42.22 0 3981821..3982675 + 284 196158488 - MADE_03691 - Kef-type K+ transport system, NAD-binding component 3664 45.44 0 3982866..3985640 - 924 196158489 - MADE_03692 - TPR domain protein 3665 47.91 0 3985947..3987716 + 589 196158490 - MADE_03693 - ATP-dependent RNA helicase 3666 47.78 0 3987792..3989231 + 479 196158491 - MADE_03694 - uroporphyrin-III C-methyltransferase 3667 48.26 0 3989374..3990324 + 316 196158492 - MADE_03695 - hypothetical protein 3668 47.24 0 3990458..3991744 - 428 196158493 - MADE_03696 - PhoH family protein 3669 44.67 0 3992159..3994186 - 675 196158494 - MADE_03697 - ABC-type sugar transport system, periplasmic component 3670 44.22 0 3994374..3994520 + 48 196158495 - MADE_03698 - hypothetical protein 3671 48.87 +1 3994681..3997524 + 947 196158496 - MADE_03699 - RNA polymerase-associated protein HepA 3672 49.23 +1 3997564..3998280 + 238 196158497 - MADE_03700 - pseudouridylate synthase for 23S rRNA (position 746) and tRNAphe(position 32), dual specificity 3673 45.49 0 3998500..3999330 + 276 196158498 - MADE_03701 - hypothetical protein 3674 42.86 0 3999588..3999797 + 69 196158499 - MADE_03702 - hypothetical protein 3675 46.03 0 3999895..4001241 + 448 196158500 - MADE_03703 - putative muropeptide transport protein (mFS family), highly conserved in gamma-proteobacteria 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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