version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3532 47.72 0 3840331..3841011 + 226 196158357 - MADE_03560 - putative hydroxylase 3533 52.38 +2 3841173..3841298 + 41 196158358 - MADE_03561 - hypothetical protein 3534 43.00 0 3841428..3842120 + 230 196158359 - MADE_03562 - putative secreted protein 3535 45.38 0 3842174..3843352 - 392 196158360 - MADE_03563 - TonB domain protein 3536 46.35 0 3843405..3844487 - 360 196158361 - MADE_03564 - hypothetical protein 3537 48.30 0 3844637..3845812 - 391 196158362 - MADE_03565 - permease 3538 46.92 0 3846067..3847752 - 561 196158363 - MADE_03566 - Carbon starvation regulatory protein 3539 41.37 -1 3848051..3848548 + 165 196158364 - MADE_03567 - membrane protein 3540 44.51 0 3848599..3849618 - 339 196158365 - MADE_03568 - esterase 3541 43.47 0 3849956..3850843 + 295 196158366 - MADE_03569 - GumN 3542 46.33 0 3851093..3852277 - 394 196158367 - MADE_03570 - elongation factor Tu 3543 44.64 0 3852341..3852685 - 114 196158368 - MADE_03571 - elongation factor EF-2 3544 40.18 -1 3852734..3853492 - 252 196158369 - MADE_03572 - putative transcriptional acitvator, Baf family 3545 45.90 0 3853629..3854615 - 328 196158370 - MADE_03573 - putative BirA bifunctional protein 3546 41.37 -1 3854612..3855694 - 360 196158371 - MADE_03574 - UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) 3547 42.71 0 3855787..3857364 - 525 196158372 - MADE_03575 - methyl-accepting chemotaxis protein 3548 40.10 -1 3857714..3857905 + 63 196158373 - MADE_03576 - RNA-binding protein 3549 40.22 -1 3863248..3863712 + 154 196158374 - MADE_03577 - RNA-binding protein 3550 42.23 0 3863777..3865102 - 441 196158375 - MADE_03578 - putative orphan protein 3551 41.71 0 3865255..3866364 + 369 196158376 - MADE_03579 - tRNA (uracil-5-)-methyltransferase 3552 46.63 0 3866414..3867007 - 197 196158377 - MADE_03580 - putative transcriptional regulator, TetR family protein 3553 44.68 0 3867349..3868476 + 375 196158378 - MADE_03581 - hypothetical putative delta-9 fatty acid desaturase 3554 45.92 0 3868681..3870102 + 473 196158379 - MADE_03582 - soluble pyridine nucleotide transhydrogenase 3555 44.12 0 3870157..3870462 - 101 196158380 - MADE_03583 - soluble pyridine nucleotide transhydrogenase 3556 46.94 0 3870577..3871164 + 195 196158381 - MADE_03584 - uracil-DNA glycosylase 3557 43.17 0 3871161..3873386 - 741 196158382 - MADE_03585 - response regulator/GGDEF/EAL domain protein 3558 43.82 0 3873528..3874433 + 301 196158383 - MADE_03586 - hypothetical protein 3559 46.32 0 3874430..3875176 - 248 196158384 - MADE_03587 - phosphoadenosine phosphosulfate reductase 3560 47.68 0 3875166..3876887 - 573 196158385 - MADE_03588 - putative sulfite reductase (NADPH) hemoprotein beta-component 3561 46.74 0 3876887..3878713 - 608 196158386 - MADE_03589 - sulfite reductase, alpha subunit (flavoprotein) 3562 32.59 -2 3878720..3878854 - 44 196158387 - MADE_03590 - hypothetical protein 3563 41.27 -1 3878912..3879667 - 251 196158388 - MADE_03591 - hypothetical protein 3564 41.09 -1 3879671..3880663 - 330 196158389 - MADE_03592 - hypothetical protein 3565 42.15 0 3880820..3881182 - 120 196158390 - MADE_03593 - hypothetical protein 3566 45.54 0 3881182..3881394 - 70 196158391 - MADE_03594 - phage shock protein C 3567 41.70 0 3881446..3882114 - 222 196158392 - MADE_03595 - phage shock protein A 3568 47.97 0 3882447..3882692 - 81 196158393 - MADE_03596 - major facilitator superfamily MFS_1 3569 45.37 0 3882924..3883970 - 348 196158394 - MADE_03597 - tRNA-dihydrouridine synthase A 3570 39.63 -1 3884050..3885192 + 380 196158395 - MADE_03598 - site-specific recombinase, phage integrase family protein 3571 43.33 0 3885317..3886216 + 299 196158396 - MADE_03599 - site-specific recombinase, phage integrase 3572 51.13 +1 3886291..3887700 + 469 196158397 - MADE_03600 - transposase and inactivated derivative 3573 33.94 -2 3888198..3889844 - 548 196158398 - MADE_03601 - funZ protein 3574 39.56 -1 3889949..3890719 - 256 196158399 - MADE_03602 - hypothetical protein 3575 36.59 -2 3890931..3891206 + 91 196158400 - MADE_03603 - hypothetical protein 3576 35.00 -2 3891330..3891449 - 39 196158401 - MADE_03604 - hypothetical protein 3577 45.43 0 3891443..3891814 - 123 196158402 - MADE_03605 - hypothetical protein 3578 40.44 -1 3892692..3893591 + 299 196158403 - MADE_03606 - putative orphan protein 3579 37.50 -2 3893967..3894230 - 87 196158404 - MADE_03607 - hypothetical protein 3580 38.15 -1 3894613..3895443 - 276 196158405 - MADE_03608 - hypothetical protein 3581 44.37 0 3895467..3898892 - 1141 196158406 - MADE_03609 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicase 3582 40.44 -1 3898916..3899998 - 360 196158407 - MADE_03610 - type I site-specific deoxyribonuclease 3583 44.44 0 3900070..3901716 - 548 196158408 - MADE_03611 - Type I restriction-modification system methyltransferase subunit 3584 37.46 -2 3901794..3902909 - 371 196158409 - MADE_03612 - Plasmid maintenance system antidote protein 3585 48.85 +1 3903447..3903620 + 57 196158410 - MADE_03613 - hypothetical protein 3586 39.61 -1 3904128..3905306 + 392 196158411 - MADE_03614 - uba/thif-type NAD/fad binding fold protein 3587 37.78 -2 3905699..3905833 - 44 196158412 - MADE_03615 - putative orphan protein 3588 40.00 -1 3906144..3906398 - 84 196158413 - MADE_03616 - hypothetical protein 3589 43.41 0 3907250..3907795 + 181 196158414 - MADE_03617 - hypothetical protein 3590 42.03 0 3907954..3908091 - 45 196158415 - MADE_03618 - hypothetical protein 3591 39.13 -1 3908091..3908228 - 45 196158416 - MADE_03619 - hypothetical protein 3592 41.56 0 3908307..3909437 + 376 196158417 - MADE_03620 - hypothetical protein 3593 41.37 -1 3910324..3910572 - 82 196158418 - MADE_03621 - hypothetical protein 3594 41.34 -1 3910758..3911444 - 228 196158419 - MADE_03622 - hypothetical protein 3595 43.32 0 3911727..3912317 + 196 196158420 - MADE_03623 - hypothetical protein 3596 43.71 0 3912321..3914084 + 587 196158421 - MADE_03624 - OmpA/MotB 3597 41.15 -1 3914100..3914585 + 161 196158422 - MADE_03625 - small GTP-binding protein 3598 43.00 0 3914595..3916715 + 706 196158423 - MADE_03626 - sensory box-containing diguanylate cyclase, putative 3599 45.55 0 3916818..3917660 - 280 196158424 - MADE_03627 - Carboxylesterase 3600 43.50 0 3917774..3918688 + 304 196158425 - MADE_03628 - Acyltransferase family protein (Phospholipid/glycerol acyltransferase) 3601 42.17 0 3918685..3919578 + 297 196158426 - MADE_03629 - phospholipid/glycerol acyltransferase 3602 45.28 0 3919582..3921012 + 476 196158427 - MADE_03630 - mechanosensitive ion channel 3603 43.75 0 3921082..3921273 - 63 196158428 - MADE_03631 - hypothetical protein 3604 44.53 0 3921609..3922421 + 270 196158429 - MADE_03632 - putative secreted protein 3605 48.59 +1 3922652..3923464 + 270 196158430 - MADE_03633 - hypothetical enzyme of sugar metabolism 3606 44.73 0 3923533..3924954 - 473 196158431 - MADE_03634 - putative sodium-dependent transporter 3607 41.33 -1 3925017..3925166 + 49 196158432 - MADE_03635 - hypothetical protein 3608 46.69 0 3925223..3925948 - 241 196158433 - MADE_03636 - oxidoreductase, short-chain dehydrogenase/reductase family protein 3609 48.48 +1 3925938..3926333 - 131 196158434 - MADE_03637 - Potential redox protein 3610 46.34 0 3926595..3927140 + 181 196158435 - MADE_03638 - peptide methionine sulfoxide reductase MsrA 3611 45.90 0 3927238..3928359 - 373 196158436 - MADE_03639 - hypothetical protein 3612 47.58 0 3928641..3929342 + 233 196158437 - MADE_03640 - hypothetical protein 3613 44.83 0 3929366..3930478 + 370 196158438 - MADE_03641 - peptide methionine sulfoxide reductase 3614 44.69 0 3930496..3931032 + 178 196158439 - MADE_03642 - flavodoxin 3615 45.37 0 3931058..3931846 + 262 196158440 - MADE_03643 - hypothetical protein 3616 49.57 +1 3931955..3932071 + 38 196158441 - MADE_03644 - hypothetical protein 3617 48.35 +1 3932162..3932767 + 201 196158442 - MADE_03645 - aminoglycoside phosphotransferase 3618 46.54 0 3932989..3933147 + 52 196158443 - MADE_03646 - hypothetical protein 3619 49.35 +1 3933224..3935146 + 640 196158444 - MADE_03647 - TonB-dependent receptor 3620 42.65 0 3935581..3936213 + 210 196158445 - MADE_03648 - thiol:disulfide interchange protein DsbA 3621 45.35 0 3936290..3936880 + 196 196158446 - MADE_03649 - predicted hydrolase 3622 46.74 0 3936970..3938118 - 382 196158447 - MADE_03650 - putative lipoprotein 3623 45.75 0 3938117..3938269 + 50 196158448 - MADE_03651 - hypothetical protein 3624 45.27 0 3938321..3939208 - 295 196158449 - MADE_03652 - nitrate transport ATP-binding subunits C and D 3625 47.43 0 3939225..3940274 - 349 196158450 - MADE_03653 - putative nitrate ABC transporter, permease protein 3626 48.30 0 3940310..3941719 - 469 196158451 - MADE_03654 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component 3627 44.57 0 3942276..3943592 - 438 196158452 - MADE_03655 - putative chemotaxis transducer 3628 45.68 0 3943777..3944772 - 331 196158453 - MADE_03656 - glycosyl transferase, family 3 3629 49.26 +1 3944756..3945697 - 313 196158454 - MADE_03657 - multifunctional protein 3630 48.25 0 3945734..3948562 - 942 196158455 - MADE_03658 - nitrate reductase 3631 45.43 0 3948621..3948992 - 123 196158456 - MADE_03659 - putative nitrate reductase (electron transfer subunit) AND putative nitrite reductase (small subunit) 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0