IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3456	 44.64	0	3757216..3758223	+	335	196158281	-	MADE_03484	-	quinol oxidase, subunit II
3457	 47.62	0	3758869..3759351	-	160	196158282	-	MADE_03485	-	regulatory protein, AsnC/Lrp
3458	 42.44	0	3759469..3760182	-	237	196158283	-	MADE_03486	-	hypothetical protein
3459	 41.90	0	3760377..3760586	-	69	196158284	-	MADE_03487	-	putative cold shock-like protein cspG
3460	 46.23	0	3760881..3762470	-	529	196158285	-	MADE_03488	-	predicted protein kinase
3461	 47.96	0	3762533..3763168	-	211	196158286	-	MADE_03489	-	hypothetical protein
3462	 46.95	0	3763168..3763953	-	261	196158287	-	MADE_03490	-	ubiquinone/menaquinone biosynthesis methyltransferase
3463	 47.44	0	3764068..3764769	-	233	196158288	-	MADE_03491	-	3-methyl-adenine DNA glycosylase
3464	 47.47	0	3764776..3766812	-	678	196158289	-	MADE_03492	-	oligopeptidase A
3465	 46.88	0	3767116..3767676	+	186	196158290	-	MADE_03493	-	response regulator
3466	 45.70	0	3767698..3768522	+	274	196158291	-	MADE_03494	-	ABC-type phosphate/phosphonate transport system, periplasmic component
3467	 44.62	0	3768534..3770207	+	557	196158292	-	MADE_03495	-	Signal transduction histidine kinase
3468	 42.38	0	3770281..3771585	+	434	196158293	-	MADE_03496	-	response regulator
3469	 47.33	0	3771837..3773186	+	449	196158294	-	MADE_03497	-	glutathione reductase
3470	 47.40	0	3773321..3775510	-	729	196158295	-	MADE_03498	-	Anaerobic dehydrogenase
3471	 48.41	+1	3775770..3779105	+	1111	196158296	-	MADE_03499	-	amidohydrolase
3472	 47.83	0	3779330..3779881	+	183	196158297	-	MADE_03500	-	hypothetical protein
3473	 46.25	0	3780014..3781159	+	381	196158298	-	MADE_03501	-	lipoprotein, putative
3474	 45.68	0	3781223..3782680	+	485	196158299	-	MADE_03502	-	hypothetical protein
3475	 48.76	+1	3782692..3784674	+	660	196158300	-	MADE_03503	-	Secreted protein with uncharacterized domain
3476	 40.00	-1	3784664..3784783	+	39	196158301	-	MADE_03504	-	hypothetical protein
3477	 45.65	0	3784800..3785570	+	256	196158302	-	MADE_03505	-	Possible biopolymer transport protein, ExbB family
3478	 49.20	+1	3785586..3786644	+	352	196158303	-	MADE_03506	-	Secreted protein, containing von Willebrand factor (vWF) type A domain
3479	 48.26	0	3786658..3787608	+	316	196158304	-	MADE_03507	-	Secreted protein, containing von Willebrand factor (vWF) type A domain
3480	 46.08	0	3787686..3789230	-	514	196158305	-	MADE_03508	-	Hydroxymethylglutaryl-coenzyme A reductase
3481	 47.21	0	3789685..3790938	+	417	196158306	-	MADE_03509	-	membrane-fusion protein
3482	 47.63	0	3790938..3793112	+	724	196158307	-	MADE_03510	-	toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative
3483	 41.99	0	3793109..3793420	+	103	196158308	-	MADE_03511	-	putative transcriptional regulator, LuxR family protein
3484	 46.34	0	3793576..3793698	+	40	196158309	-	MADE_03512	-	hypothetical protein
3485	 45.81	0	3793817..3794818	+	333	196158310	-	MADE_03513	-	hypothetical protein
3486	 43.03	0	3795027..3795356	+	109	196158311	-	MADE_03514	-	HtaR suppressor protein
3487	 40.57	-1	3795377..3795832	+	151	196158312	-	MADE_03515	-	hypothetical protein
3488	 45.67	0	3796024..3797352	-	442	196158313	-	MADE_03516	-	ATP-dependent protease ATP-binding subunit
3489	 48.45	+1	3797435..3797917	-	160	196158314	-	MADE_03517	-	ATP-dependent protease peptidase subunit
3490	 45.77	0	3798287..3798865	-	192	196158315	-	MADE_03518	-	Sporulation related
3491	 51.00	+1	3798998..3801187	-	729	196158316	-	MADE_03519	-	primosome assembly protein PriA
3492	 41.78	0	3801542..3801754	+	70	196158317	-	MADE_03520	-	50S ribosomal subunit protein L31
3493	 46.86	0	3801922..3802239	-	105	196158318	-	MADE_03521	-	hypothetical protein
3494	 49.11	+1	3802790..3804025	+	411	196158319	-	MADE_03522	-	NADP-dependent malic enzyme
3495	 46.85	0	3804199..3804531	-	110	196158320	-	MADE_03523	-	transcriptional repressor protein MetJ
3496	 48.20	0	3804693..3805580	+	295	196158321	-	MADE_03524	-	5,10-methylenetetrahydrofolate reductase
3497	 39.86	-1	3805586..3805723	+	45	196158322	-	MADE_03525	-	hypothetical protein
3498	 42.37	0	3805819..3806703	+	294	196158323	-	MADE_03526	-	tRNA processing exoribonuclease BN; required for maturation of tRNA encoded by bacteriophages; dimer
3499	 47.73	0	3806914..3807552	-	212	196158324	-	MADE_03527	-	glutamine synthetase
3500	 44.44	0	3807549..3807791	-	80	196158325	-	MADE_03528	-	hypothetical protein
3501	 47.34	0	3807973..3808950	+	325	196158326	-	MADE_03529	-	proline iminopeptidase
3502	 47.03	0	3808947..3809384	+	145	196158327	-	MADE_03530	-	D-tyrosyl-tRNA deacylase
3503	 44.48	0	3809590..3810504	+	304	196158328	-	MADE_03531	-	fused GNAT family acetyltransferase/PaaI-related uncharacterized conserved domain
3504	 45.32	0	3810603..3811436	-	277	196158329	-	MADE_03532	-	RNA polymerase sigma factor
3505	 42.79	0	3812069..3813295	+	408	196158330	-	MADE_03533	-	EAL domain protein
3506	 43.20	0	3813450..3814685	+	411	196158331	-	MADE_03534	-	diguanylate phosphodiesterase
3507	 44.85	0	3814699..3815679	-	326	196158332	-	MADE_03535	-	cell division protein
3508	 47.76	0	3815676..3816389	-	237	196158333	-	MADE_03536	-	FtsE
3509	 50.06	+1	3816416..3818041	-	541	196158334	-	MADE_03537	-	signal recognition particle GTPase
3510	 46.08	0	3818129..3818779	+	216	196158335	-	MADE_03538	-	putative methyltransferase
3511	 48.01	0	3818868..3819446	-	192	196158336	-	MADE_03539	-	putative orphan protein
3512	 44.28	0	3819447..3820049	-	200	196158337	-	MADE_03540	-	multiple antibiotic resistance (MarC)-related protein
3513	 44.81	0	3820505..3820687	+	60	196158338	-	MADE_03541	-	hypothetical protein
3514	 49.22	+1	3820817..3822100	-	427	196158339	-	MADE_03542	-	aminopeptidase B
3515	 39.72	-1	3822100..3822240	+	46	196158340	-	MADE_03543	-	hypothetical protein
3516	 43.93	0	3822334..3823050	+	238	196158341	-	MADE_03544	-	sugar fermentation stimulation protein
3517	 46.62	0	3823262..3823720	+	152	196158342	-	MADE_03545	-	putative DnaK suppressor protein
3518	 46.95	0	3823796..3824779	+	327	196158343	-	MADE_03546	-	putative glutamyl-tRNA synthetase-relatedprotein
3519	 42.98	0	3824802..3824915	-	37	196158344	-	MADE_03547	-	hypothetical protein
3520	 48.48	+1	3824878..3826197	+	439	196158345	-	MADE_03548	-	poly(A) polymerase I
3521	 48.80	+1	3826190..3826687	+	165	196158346	-	MADE_03549	-	7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase
3522	 46.67	0	3826746..3827540	+	264	196158347	-	MADE_03550	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3523	 48.41	+1	3827552..3828400	+	282	196158348	-	MADE_03551	-	pantothenate synthetase
3524	 48.56	+1	3828609..3830243	-	544	196158349	-	MADE_03552	-	Glutamate decarboxylase putative
3525	 45.22	0	3830792..3831523	+	243	196158350	-	MADE_03553	-	putative orphan protein; putative EAL domain
3526	 50.22	+1	3831617..3832285	-	222	196158351	-	MADE_03554	-	putative methyltransferase SAM dependent
3527	 42.89	0	3832285..3833100	-	271	196158352	-	MADE_03555	-	ABC-type multidrug transport system, permease component
3528	 46.84	0	3833127..3834059	-	310	196158353	-	MADE_03556	-	ABC transporter, ATP-binding protein
3529	 45.65	0	3834720..3835409	+	229	196158354	-	MADE_03557	-	two component transcriptional regulator, winged helix family
3530	 47.58	0	3835522..3837690	+	722	196158355	-	MADE_03558	-	putative sensor histidine kinase
3531	 46.41	0	3837973..3840258	+	761	196158356	-	MADE_03559	-	putative outer membrane receptor for iron transport
3532	 47.72	0	3840331..3841011	+	226	196158357	-	MADE_03560	-	putative hydroxylase
3533	 52.38	+2	3841173..3841298	+	41	196158358	-	MADE_03561	-	hypothetical protein
3534	 43.00	0	3841428..3842120	+	230	196158359	-	MADE_03562	-	putative secreted protein
3535	 45.38	0	3842174..3843352	-	392	196158360	-	MADE_03563	-	TonB domain protein
3536	 46.35	0	3843405..3844487	-	360	196158361	-	MADE_03564	-	hypothetical protein
3537	 48.30	0	3844637..3845812	-	391	196158362	-	MADE_03565	-	permease
3538	 46.92	0	3846067..3847752	-	561	196158363	-	MADE_03566	-	Carbon starvation regulatory protein
3539	 41.37	-1	3848051..3848548	+	165	196158364	-	MADE_03567	-	membrane protein
3540	 44.51	0	3848599..3849618	-	339	196158365	-	MADE_03568	-	esterase
3541	 43.47	0	3849956..3850843	+	295	196158366	-	MADE_03569	-	GumN
3542	 46.33	0	3851093..3852277	-	394	196158367	-	MADE_03570	-	elongation factor Tu
3543	 44.64	0	3852341..3852685	-	114	196158368	-	MADE_03571	-	elongation factor EF-2
3544	 40.18	-1	3852734..3853492	-	252	196158369	-	MADE_03572	-	putative transcriptional acitvator, Baf family
3545	 45.90	0	3853629..3854615	-	328	196158370	-	MADE_03573	-	putative BirA bifunctional protein
3546	 41.37	-1	3854612..3855694	-	360	196158371	-	MADE_03574	-	UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase)
3547	 42.71	0	3855787..3857364	-	525	196158372	-	MADE_03575	-	methyl-accepting chemotaxis protein
3548	 40.10	-1	3857714..3857905	+	63	196158373	-	MADE_03576	-	RNA-binding protein
3549	 40.22	-1	3863248..3863712	+	154	196158374	-	MADE_03577	-	RNA-binding protein
3550	 42.23	0	3863777..3865102	-	441	196158375	-	MADE_03578	-	putative orphan protein
3551	 41.71	0	3865255..3866364	+	369	196158376	-	MADE_03579	-	tRNA (uracil-5-)-methyltransferase
3552	 46.63	0	3866414..3867007	-	197	196158377	-	MADE_03580	-	putative transcriptional regulator, TetR family protein
3553	 44.68	0	3867349..3868476	+	375	196158378	-	MADE_03581	-	hypothetical putative delta-9 fatty acid desaturase
3554	 45.92	0	3868681..3870102	+	473	196158379	-	MADE_03582	-	soluble pyridine nucleotide transhydrogenase
3555	 44.12	0	3870157..3870462	-	101	196158380	-	MADE_03583	-	soluble pyridine nucleotide transhydrogenase
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.