version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3456 44.64 0 3757216..3758223 + 335 196158281 - MADE_03484 - quinol oxidase, subunit II 3457 47.62 0 3758869..3759351 - 160 196158282 - MADE_03485 - regulatory protein, AsnC/Lrp 3458 42.44 0 3759469..3760182 - 237 196158283 - MADE_03486 - hypothetical protein 3459 41.90 0 3760377..3760586 - 69 196158284 - MADE_03487 - putative cold shock-like protein cspG 3460 46.23 0 3760881..3762470 - 529 196158285 - MADE_03488 - predicted protein kinase 3461 47.96 0 3762533..3763168 - 211 196158286 - MADE_03489 - hypothetical protein 3462 46.95 0 3763168..3763953 - 261 196158287 - MADE_03490 - ubiquinone/menaquinone biosynthesis methyltransferase 3463 47.44 0 3764068..3764769 - 233 196158288 - MADE_03491 - 3-methyl-adenine DNA glycosylase 3464 47.47 0 3764776..3766812 - 678 196158289 - MADE_03492 - oligopeptidase A 3465 46.88 0 3767116..3767676 + 186 196158290 - MADE_03493 - response regulator 3466 45.70 0 3767698..3768522 + 274 196158291 - MADE_03494 - ABC-type phosphate/phosphonate transport system, periplasmic component 3467 44.62 0 3768534..3770207 + 557 196158292 - MADE_03495 - Signal transduction histidine kinase 3468 42.38 0 3770281..3771585 + 434 196158293 - MADE_03496 - response regulator 3469 47.33 0 3771837..3773186 + 449 196158294 - MADE_03497 - glutathione reductase 3470 47.40 0 3773321..3775510 - 729 196158295 - MADE_03498 - Anaerobic dehydrogenase 3471 48.41 +1 3775770..3779105 + 1111 196158296 - MADE_03499 - amidohydrolase 3472 47.83 0 3779330..3779881 + 183 196158297 - MADE_03500 - hypothetical protein 3473 46.25 0 3780014..3781159 + 381 196158298 - MADE_03501 - lipoprotein, putative 3474 45.68 0 3781223..3782680 + 485 196158299 - MADE_03502 - hypothetical protein 3475 48.76 +1 3782692..3784674 + 660 196158300 - MADE_03503 - Secreted protein with uncharacterized domain 3476 40.00 -1 3784664..3784783 + 39 196158301 - MADE_03504 - hypothetical protein 3477 45.65 0 3784800..3785570 + 256 196158302 - MADE_03505 - Possible biopolymer transport protein, ExbB family 3478 49.20 +1 3785586..3786644 + 352 196158303 - MADE_03506 - Secreted protein, containing von Willebrand factor (vWF) type A domain 3479 48.26 0 3786658..3787608 + 316 196158304 - MADE_03507 - Secreted protein, containing von Willebrand factor (vWF) type A domain 3480 46.08 0 3787686..3789230 - 514 196158305 - MADE_03508 - Hydroxymethylglutaryl-coenzyme A reductase 3481 47.21 0 3789685..3790938 + 417 196158306 - MADE_03509 - membrane-fusion protein 3482 47.63 0 3790938..3793112 + 724 196158307 - MADE_03510 - toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative 3483 41.99 0 3793109..3793420 + 103 196158308 - MADE_03511 - putative transcriptional regulator, LuxR family protein 3484 46.34 0 3793576..3793698 + 40 196158309 - MADE_03512 - hypothetical protein 3485 45.81 0 3793817..3794818 + 333 196158310 - MADE_03513 - hypothetical protein 3486 43.03 0 3795027..3795356 + 109 196158311 - MADE_03514 - HtaR suppressor protein 3487 40.57 -1 3795377..3795832 + 151 196158312 - MADE_03515 - hypothetical protein 3488 45.67 0 3796024..3797352 - 442 196158313 - MADE_03516 - ATP-dependent protease ATP-binding subunit 3489 48.45 +1 3797435..3797917 - 160 196158314 - MADE_03517 - ATP-dependent protease peptidase subunit 3490 45.77 0 3798287..3798865 - 192 196158315 - MADE_03518 - Sporulation related 3491 51.00 +1 3798998..3801187 - 729 196158316 - MADE_03519 - primosome assembly protein PriA 3492 41.78 0 3801542..3801754 + 70 196158317 - MADE_03520 - 50S ribosomal subunit protein L31 3493 46.86 0 3801922..3802239 - 105 196158318 - MADE_03521 - hypothetical protein 3494 49.11 +1 3802790..3804025 + 411 196158319 - MADE_03522 - NADP-dependent malic enzyme 3495 46.85 0 3804199..3804531 - 110 196158320 - MADE_03523 - transcriptional repressor protein MetJ 3496 48.20 0 3804693..3805580 + 295 196158321 - MADE_03524 - 5,10-methylenetetrahydrofolate reductase 3497 39.86 -1 3805586..3805723 + 45 196158322 - MADE_03525 - hypothetical protein 3498 42.37 0 3805819..3806703 + 294 196158323 - MADE_03526 - tRNA processing exoribonuclease BN; required for maturation of tRNA encoded by bacteriophages; dimer 3499 47.73 0 3806914..3807552 - 212 196158324 - MADE_03527 - glutamine synthetase 3500 44.44 0 3807549..3807791 - 80 196158325 - MADE_03528 - hypothetical protein 3501 47.34 0 3807973..3808950 + 325 196158326 - MADE_03529 - proline iminopeptidase 3502 47.03 0 3808947..3809384 + 145 196158327 - MADE_03530 - D-tyrosyl-tRNA deacylase 3503 44.48 0 3809590..3810504 + 304 196158328 - MADE_03531 - fused GNAT family acetyltransferase/PaaI-related uncharacterized conserved domain 3504 45.32 0 3810603..3811436 - 277 196158329 - MADE_03532 - RNA polymerase sigma factor 3505 42.79 0 3812069..3813295 + 408 196158330 - MADE_03533 - EAL domain protein 3506 43.20 0 3813450..3814685 + 411 196158331 - MADE_03534 - diguanylate phosphodiesterase 3507 44.85 0 3814699..3815679 - 326 196158332 - MADE_03535 - cell division protein 3508 47.76 0 3815676..3816389 - 237 196158333 - MADE_03536 - FtsE 3509 50.06 +1 3816416..3818041 - 541 196158334 - MADE_03537 - signal recognition particle GTPase 3510 46.08 0 3818129..3818779 + 216 196158335 - MADE_03538 - putative methyltransferase 3511 48.01 0 3818868..3819446 - 192 196158336 - MADE_03539 - putative orphan protein 3512 44.28 0 3819447..3820049 - 200 196158337 - MADE_03540 - multiple antibiotic resistance (MarC)-related protein 3513 44.81 0 3820505..3820687 + 60 196158338 - MADE_03541 - hypothetical protein 3514 49.22 +1 3820817..3822100 - 427 196158339 - MADE_03542 - aminopeptidase B 3515 39.72 -1 3822100..3822240 + 46 196158340 - MADE_03543 - hypothetical protein 3516 43.93 0 3822334..3823050 + 238 196158341 - MADE_03544 - sugar fermentation stimulation protein 3517 46.62 0 3823262..3823720 + 152 196158342 - MADE_03545 - putative DnaK suppressor protein 3518 46.95 0 3823796..3824779 + 327 196158343 - MADE_03546 - putative glutamyl-tRNA synthetase-relatedprotein 3519 42.98 0 3824802..3824915 - 37 196158344 - MADE_03547 - hypothetical protein 3520 48.48 +1 3824878..3826197 + 439 196158345 - MADE_03548 - poly(A) polymerase I 3521 48.80 +1 3826190..3826687 + 165 196158346 - MADE_03549 - 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase 3522 46.67 0 3826746..3827540 + 264 196158347 - MADE_03550 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 3523 48.41 +1 3827552..3828400 + 282 196158348 - MADE_03551 - pantothenate synthetase 3524 48.56 +1 3828609..3830243 - 544 196158349 - MADE_03552 - Glutamate decarboxylase putative 3525 45.22 0 3830792..3831523 + 243 196158350 - MADE_03553 - putative orphan protein; putative EAL domain 3526 50.22 +1 3831617..3832285 - 222 196158351 - MADE_03554 - putative methyltransferase SAM dependent 3527 42.89 0 3832285..3833100 - 271 196158352 - MADE_03555 - ABC-type multidrug transport system, permease component 3528 46.84 0 3833127..3834059 - 310 196158353 - MADE_03556 - ABC transporter, ATP-binding protein 3529 45.65 0 3834720..3835409 + 229 196158354 - MADE_03557 - two component transcriptional regulator, winged helix family 3530 47.58 0 3835522..3837690 + 722 196158355 - MADE_03558 - putative sensor histidine kinase 3531 46.41 0 3837973..3840258 + 761 196158356 - MADE_03559 - putative outer membrane receptor for iron transport 3532 47.72 0 3840331..3841011 + 226 196158357 - MADE_03560 - putative hydroxylase 3533 52.38 +2 3841173..3841298 + 41 196158358 - MADE_03561 - hypothetical protein 3534 43.00 0 3841428..3842120 + 230 196158359 - MADE_03562 - putative secreted protein 3535 45.38 0 3842174..3843352 - 392 196158360 - MADE_03563 - TonB domain protein 3536 46.35 0 3843405..3844487 - 360 196158361 - MADE_03564 - hypothetical protein 3537 48.30 0 3844637..3845812 - 391 196158362 - MADE_03565 - permease 3538 46.92 0 3846067..3847752 - 561 196158363 - MADE_03566 - Carbon starvation regulatory protein 3539 41.37 -1 3848051..3848548 + 165 196158364 - MADE_03567 - membrane protein 3540 44.51 0 3848599..3849618 - 339 196158365 - MADE_03568 - esterase 3541 43.47 0 3849956..3850843 + 295 196158366 - MADE_03569 - GumN 3542 46.33 0 3851093..3852277 - 394 196158367 - MADE_03570 - elongation factor Tu 3543 44.64 0 3852341..3852685 - 114 196158368 - MADE_03571 - elongation factor EF-2 3544 40.18 -1 3852734..3853492 - 252 196158369 - MADE_03572 - putative transcriptional acitvator, Baf family 3545 45.90 0 3853629..3854615 - 328 196158370 - MADE_03573 - putative BirA bifunctional protein 3546 41.37 -1 3854612..3855694 - 360 196158371 - MADE_03574 - UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) 3547 42.71 0 3855787..3857364 - 525 196158372 - MADE_03575 - methyl-accepting chemotaxis protein 3548 40.10 -1 3857714..3857905 + 63 196158373 - MADE_03576 - RNA-binding protein 3549 40.22 -1 3863248..3863712 + 154 196158374 - MADE_03577 - RNA-binding protein 3550 42.23 0 3863777..3865102 - 441 196158375 - MADE_03578 - putative orphan protein 3551 41.71 0 3865255..3866364 + 369 196158376 - MADE_03579 - tRNA (uracil-5-)-methyltransferase 3552 46.63 0 3866414..3867007 - 197 196158377 - MADE_03580 - putative transcriptional regulator, TetR family protein 3553 44.68 0 3867349..3868476 + 375 196158378 - MADE_03581 - hypothetical putative delta-9 fatty acid desaturase 3554 45.92 0 3868681..3870102 + 473 196158379 - MADE_03582 - soluble pyridine nucleotide transhydrogenase 3555 44.12 0 3870157..3870462 - 101 196158380 - MADE_03583 - soluble pyridine nucleotide transhydrogenase 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0