version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 256 46.14 0 277860..278351 + 163 196155081 - MADE_00258 - MSHA pilin protein MshA 257 47.62 0 278353..278814 + 153 196155082 - MADE_00259 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshC (pilus type IV) 258 44.99 0 278789..279397 + 202 196155083 - MADE_00260 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV) 259 42.20 0 279397..280152 + 251 196155084 - MADE_00261 - Tfp pilus assembly protein PilW 260 43.94 0 280142..280603 + 153 196155085 - MADE_00262 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshP (pilus type IV) 261 46.68 0 280783..284289 + 1168 196155086 - MADE_00263 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (pilus type IV) 262 48.75 +1 284644..285687 + 347 196155087 - MADE_00264 - rod shape-determining protein MreB 263 47.84 0 285782..286615 + 277 196155088 - MADE_00265 - Rod shape-determining protein 264 44.66 0 286626..287084 + 152 196155089 - MADE_00266 - rod shape-determining protein MreD 265 47.04 0 287121..287711 + 196 196155090 - MADE_00267 - septum formation protein Maf 266 45.54 0 287708..289174 + 488 196155091 - MADE_00268 - cytoplasmic axial filament protein 267 46.17 0 289201..293196 + 1331 196155092 - MADE_00269 - putative protease 268 46.15 0 293189..294007 + 272 196155093 - MADE_00270 - predicted amidohydrolase, nitrilase family protein 269 49.90 +1 293970..295442 + 490 196155094 - MADE_00271 - putative suppressor of CsrA inhibitory activity; putative peptidase; involved in the control of DNA gyrase 270 45.70 0 295542..296099 - 185 196155095 - MADE_00272 - hypothetical protein 271 47.30 0 296172..297503 + 443 196155096 - MADE_00273 - pmbA protein 272 45.38 0 297583..298437 - 284 196155097 - MADE_00274 - transcriptional regulator, AraC family protein 273 47.98 0 298542..301667 + 1041 196155098 - MADE_00275 - beta-D-galactosidase 274 46.05 0 301849..302556 - 235 196155099 - MADE_00276 - aerobic respiration control protein ArcA 275 43.97 0 302711..304393 - 560 196155100 - MADE_00277 - Signal transduction histidine kinase (contains HAMP domain) 276 46.46 0 304466..305890 - 474 196155101 - MADE_00278 - glycogen synthase 277 45.24 0 306061..307143 - 360 196155102 - MADE_00279 - ribosomal RNA small subunit methyltransferase C 278 47.71 0 307143..307907 - 254 196155103 - MADE_00280 - tRNA (guanine-N(7)-)-methyltransferase 279 46.78 0 307954..308652 - 232 196155104 - MADE_00281 - putative hydrolase 280 48.69 +1 308793..309860 + 355 196155105 - MADE_00282 - A/G-specific adenine glycosylase 281 42.12 0 309914..310186 + 90 196155106 - MADE_00283 - Fe(II) trafficking protein YggX 282 44.74 0 310215..310328 + 37 196155107 - MADE_00284 - hypothetical protein 283 32.97 -2 311058..312155 + 365 196155108 - MADE_00285 - hypothetical protein 284 32.55 -2 312148..313299 + 383 196155109 - MADE_00286 - hypothetical protein 285 40.94 -1 313553..313894 + 113 196155110 - MADE_00287 - probable C-5 cytosine-specific DNA methylase 286 45.39 0 313977..314996 - 339 196155111 - MADE_00288 - hypothetical protein 287 44.66 0 315125..315883 + 252 196155112 - MADE_00289 - putative transmembrane protein 288 42.13 0 315905..316654 + 249 196155113 - MADE_00290 - hypothetical protein 289 44.22 0 316656..316949 - 97 196155114 - MADE_00291 - ribonuclease H-related protein 290 43.14 0 317008..317415 - 135 196155115 - MADE_00292 - hypothetical protein 291 44.87 0 317682..318149 - 155 196155116 - MADE_00293 - hypothetical protein 292 43.18 0 318168..320198 - 676 196155117 - MADE_00294 - ATPase, AAA family protein 293 42.62 0 320211..321104 - 297 196155118 - MADE_00295 - site-specific recombinase, phage integrase family protein 294 39.18 -1 321226..321858 - 210 196155119 - MADE_00296 - hypothetical protein 295 39.70 -1 322181..324286 + 701 196155120 - MADE_00297 - hypothetical Membrane Spanning Protein 296 39.71 -1 324455..325678 + 407 196155121 - MADE_00298 - UvrD/REP helicase 297 41.44 -1 325983..326870 + 295 196155122 - MADE_00299 - SMF protein 298 38.46 -1 326867..327100 + 77 196155123 - MADE_00300 - hypothetical protein 299 40.28 -1 327385..327528 + 47 196155124 - MADE_00301 - hypothetical protein 300 40.07 -1 328319..328585 - 88 196155125 - MADE_00302 - hypothetical protein 301 40.35 -1 328696..329208 - 170 196155126 - MADE_00303 - hypothetical protein 302 39.34 -1 329229..329927 - 232 196155127 - MADE_00304 - hypothetical protein 303 41.94 0 329932..333078 - 1048 196155128 - MADE_00305 - Heavy metal efflux pump CzcA 304 41.89 0 333091..334329 - 412 196155129 - MADE_00306 - Secretion protein HlyD 305 41.06 -1 334326..335528 - 400 196155130 - MADE_00307 - Outer membrane efflux protein 306 37.35 -2 335703..336647 - 314 196155131 - MADE_00308 - peptidase M56, BlaR1 307 39.18 -1 336656..336826 - 56 196155132 - MADE_00309 - Penicillinase repressor 308 41.47 -1 337187..338476 - 429 196155133 - MADE_00310 - site-specific recombinase, phage integrase family protein 309 41.43 -1 339940..340458 + 172 196155134 - MADE_00311 - putative metal-binding protein 310 38.00 -2 340702..341472 + 256 196155135 - MADE_00312 - methionyl-tRNA formyltransferase 311 35.96 -2 341839..341952 - 37 196155136 - MADE_00313 - hypothetical protein 312 41.22 -1 342408..343814 - 468 196155137 - MADE_00314 - sensory histidine kinase in two-component region 313 43.27 0 343798..344481 - 227 196155138 - MADE_00315 - probable two component response regulator transcription regulator protein 314 44.72 0 344807..344929 - 40 196155139 - MADE_00316 - hypothetical protein 315 45.80 0 345394..345738 + 114 196155140 - MADE_00317 - transcriptional regulator, MerR family protein 316 45.13 0 345738..347102 + 454 196155141 - MADE_00318 - putative cation efflux protein 317 45.42 0 347099..349117 + 672 196155142 - MADE_00319 - putative cation efflux system protein 318 46.21 0 349114..352251 + 1045 196155143 - MADE_00320 - cation efflux system protein CusA 319 41.09 -1 352369..352497 + 42 196155144 - MADE_00321 - hypothetical protein 320 40.74 -1 352562..352696 - 44 196155145 - MADE_00322 - hypothetical protein 321 43.86 0 352788..352901 + 37 196155146 - MADE_00323 - hypothetical protein 322 43.28 0 352910..353824 + 304 196155147 - MADE_00324 - putative copper export protein 323 41.46 -1 353836..354315 + 159 196155148 - MADE_00325 - putative orphan protein 324 41.20 -1 354350..354832 + 160 196155149 - MADE_00326 - L-asparaginase 325 40.63 -1 354847..355545 + 232 196155150 - MADE_00327 - hypothetical protein 326 44.44 0 355694..355819 + 41 196155151 - MADE_00328 - hypothetical protein 327 36.00 -2 355816..355965 - 49 196155152 - MADE_00329 - hypothetical protein 328 39.68 -1 356049..356804 - 251 196155153 - MADE_00330 - hypothetical protein 329 42.55 0 356814..357095 - 93 196155154 - MADE_00331 - hypothetical protein 330 42.78 0 357225..359342 - 705 196155155 - MADE_00332 - FAD linked oxidase, N-terminal 331 44.25 0 359776..359949 + 57 196155156 - MADE_00333 - hypothetical protein 332 46.30 0 360012..360173 + 53 196155157 - MADE_00334 - hypothetical protein 333 45.36 0 360300..360482 + 60 196155158 - MADE_00335 - nitric oxide reductase, cytochrome c-containing subunit 334 44.44 0 360579..361010 + 143 196155159 - MADE_00336 - hypothetical protein 335 42.32 0 361173..361439 + 88 196155160 - MADE_00337 - hypothetical protein 336 43.47 0 361513..362301 + 262 196155161 - MADE_00338 - putative exported protein of unknown function 337 46.67 0 362303..362422 + 39 196155162 - MADE_00339 - hypothetical protein 338 47.50 0 362487..364244 + 585 196155163 - MADE_00340 - putative NADH oxidoreductase; putative nitric oxide dioxygenase 339 42.56 0 364244..365002 + 252 196155164 - MADE_00341 - hypothetical protein 340 45.83 0 365002..365793 + 263 196155165 - MADE_00342 - putative exported protein of unknown function with cytochrome Cfamily domain 341 44.41 0 365911..367029 + 372 196155166 - MADE_00343 - hypothetical protein 342 48.83 +1 367044..367598 + 184 196155167 - MADE_00344 - hydrogenase 2 maturation protease 343 43.45 0 367595..368029 + 144 196155168 - MADE_00345 - HupH hydrogenase expression protein 344 48.09 0 368007..369029 + 340 196155169 - MADE_00346 - Ni-Fe hydrogenase, small subunit 345 46.75 0 369047..370924 + 625 196155170 - MADE_00347 - Ni-Fe hydrogenase large chain 346 45.71 0 371176..371385 + 69 196155171 - MADE_00348 - hydrogenase assembly chaperone hypC/hupF 347 46.30 0 371441..371764 + 107 196155172 - MADE_00349 - hydrogenase expression/formation protein HypA 348 43.37 0 371754..372500 + 248 196155173 - MADE_00350 - hydrogenase accessory protein HypB 349 45.50 0 372507..373640 + 377 196155174 - MADE_00351 - Hydrogenase formation HypD protein 350 45.77 0 373640..375946 + 768 196155175 - MADE_00352 - Hydrogenase maturation protein HypF 351 46.25 0 375946..376998 + 350 196155176 - MADE_00353 - Hydrogenase expression/formation protein HypE 352 44.53 0 377117..377527 + 136 196155177 - MADE_00354 - putative Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family) protein 353 47.25 0 377552..379900 + 782 196155178 - MADE_00355 - Cation transport ATPase 354 45.76 0 379913..380266 + 117 196155179 - MADE_00356 - putative secreted protein containing plastocyanin domain 355 44.03 0 380259..380417 - 52 196155180 - MADE_00357 - hypothetical protein 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0