version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2970 44.62 0 3249485..3250051 + 188 196157795 - MADE_02994 - hypothetical protein 2971 46.98 0 3250069..3250911 - 280 196157796 - MADE_02995 - putative deoxyribonuclease 2972 45.85 0 3250983..3251621 - 212 196157797 - MADE_02996 - pyridoxine 5-phosphate oxidase 2973 44.97 0 3251723..3252667 - 314 196157798 - MADE_02997 - GTP-binding protein Era 2974 47.45 0 3252654..3253340 - 228 196157799 - MADE_02998 - ribonuclease III 2975 47.51 0 3253340..3254242 - 300 196157800 - MADE_02999 - signal peptidase I 2976 46.69 0 3254242..3256038 - 598 196157801 - MADE_03000 - GTP-binding protein LepA 2977 49.89 +1 3256237..3256683 - 148 196157802 - MADE_03001 - sigma-E factor regulatory protein RseC 2978 48.33 +1 3256695..3257681 - 328 196157803 - MADE_03002 - putative anti sigma E (sigma 24) factor, negative regulator 2979 38.10 -1 3257767..3257934 + 55 196157804 - MADE_03003 - hypothetical protein 2980 47.59 0 3257997..3258578 - 193 196157805 - MADE_03004 - sigma E factor negative regulatory protein 2981 40.38 -1 3258678..3258890 - 70 196157806 - MADE_03005 - RNA polymerase sigma-70 factor 2982 45.43 0 3258925..3259263 - 112 196157807 - MADE_03006 - RNA polymerase sigma-70 factor 2983 48.10 0 3259452..3261137 + 561 196157808 - MADE_03007 - L-aspartate oxidase 2984 46.80 0 3261211..3262086 - 291 196157809 - MADE_03008 - MaoC domain protein dehydratase 2985 45.45 0 3262091..3262453 - 120 196157810 - MADE_03009 - hypothetical protein 2986 44.78 0 3262632..3262832 - 66 196157811 - MADE_03010 - TPR repeat protein 2987 44.44 0 3263072..3263305 + 77 196157812 - MADE_03011 - putative aminomethyltransferase 2988 43.66 0 3264731..3265069 - 112 196157813 - MADE_03014 - GlnB 2989 44.21 0 3265072..3265908 - 278 196157814 - MADE_03015 - NAD synthetase 2990 44.28 0 3266351..3266953 + 200 196157815 - MADE_03016 - putative type IV pilus biogenesis protein 2991 42.56 0 3267061..3267396 - 111 196157816 - MADE_03017 - hypothetical protein 2992 44.50 0 3267532..3268086 + 184 196157817 - MADE_03018 - hypothetical protein 2993 46.61 0 3268047..3268709 + 220 196157818 - MADE_03019 - putative prepilin peptidase dependent protein 2994 44.63 0 3268699..3269601 + 300 196157819 - MADE_03020 - hypothetical protein 2995 48.72 +1 3269732..3269926 + 64 196157820 - MADE_03021 - hypothetical protein 2996 49.68 +1 3269964..3270428 - 154 196157821 - MADE_03022 - general secretion pathway protein H 2997 45.62 0 3270431..3274498 - 1355 196157822 - MADE_03023 - Tfp pilus assembly protein tip-associated adhesin PilY1-like protein 2998 45.39 0 3274507..3275070 - 187 196157823 - MADE_03024 - hypothetical protein 2999 45.07 0 3275067..3275918 - 283 196157824 - MADE_03025 - pilin like competence factor 3000 47.06 0 3275924..3276586 - 220 196157825 - MADE_03026 - hypothetical protein 3001 48.15 0 3276990..3277934 - 314 196157826 - MADE_03027 - 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase 3002 45.09 0 3277937..3278404 - 155 196157827 - MADE_03028 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 3003 42.81 0 3278419..3278967 - 182 196157828 - MADE_03029 - signal peptidase II 3004 46.83 0 3278960..3281731 - 923 196157829 - MADE_03030 - isoleucyl-tRNA synthetase 3005 47.59 0 3282016..3282885 - 289 196157830 - MADE_03031 - riboflavin biosynthesis protein RibF 3006 46.97 0 3283045..3284562 - 505 196157831 - MADE_03032 - MviN protein 3007 48.43 +1 3285078..3285236 + 52 196157832 - MADE_03033 - 30S ribosomal protein S20 3008 44.44 0 3285344..3286531 + 395 196157833 - MADE_03034 - PII uridylyl-transferase 3009 47.76 0 3286528..3287352 + 274 196157834 - MADE_03035 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3010 47.56 0 3287580..3288029 - 149 196157835 - MADE_03036 - flavodoxin 3011 44.49 0 3288108..3288905 - 265 196157836 - MADE_03037 - pseudouridylate synthase, 23S RNA-specific 3012 48.08 0 3288902..3289240 - 112 196157837 - MADE_03038 - hypothetical protein 3013 43.81 0 3289522..3290571 + 349 196157838 - MADE_03039 - hypothetical protein 3014 42.90 0 3290573..3290875 + 100 196157839 - MADE_03040 - hypothetical protein 3015 44.60 0 3291850..3292497 - 215 196157840 - MADE_03041 - predicted acetyltransferase, GNAT family 3016 42.08 0 3292715..3293080 - 121 196157841 - MADE_03042 - putative lipoprotein 3017 49.22 +1 3293495..3293752 + 85 196157842 - MADE_03043 - hypothetical protein 3018 43.22 0 3293775..3294320 - 181 196157843 - MADE_03044 - SecY interacting protein Syd 3019 40.30 -1 3294468..3295328 + 286 196157844 - MADE_03045 - GTP cyclohydrolase I 3020 43.03 0 3295405..3296961 + 518 196157845 - MADE_03046 - GGDEF domain protein 3021 45.71 0 3296973..3298337 + 454 196157846 - MADE_03047 - hypothetical protein 3022 43.73 0 3298513..3298887 + 124 196157847 - MADE_03048 - SmpA/OmlA family lipoprotein 3023 44.93 0 3298932..3300509 + 525 196157848 - MADE_03049 - putative signal transduction protein 3024 47.42 0 3300758..3301765 + 335 196157849 - MADE_03050 - isocitrate dehydrogenase 3025 43.40 0 3302149..3302466 + 105 196157850 - MADE_03051 - late competence protein (DNA binding and uptake) 3026 44.56 0 3302546..3303436 - 296 196157851 - MADE_03052 - putative glucose-1-phosphate uridylyltransferase 3027 44.71 0 3303727..3304605 - 292 196157852 - MADE_03053 - Rhamnosyltransferase 3028 39.98 -1 3304602..3305489 - 295 196157853 - MADE_03054 - glycosyltransferase 3029 47.46 0 3305602..3306663 - 353 196157854 - MADE_03055 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 3030 36.63 -2 3306657..3306899 - 80 196157855 - MADE_03056 - hypothetical protein 3031 42.76 0 3307258..3307554 + 98 196157856 - MADE_03057 - hypothetical protein 3032 46.56 0 3307559..3309388 + 609 196157857 - MADE_03058 - capsular polysaccharide transport protein, putative 3033 42.05 0 3309391..3310170 + 259 196157858 - MADE_03059 - KpsM protein 3034 44.00 0 3310167..3310841 + 224 196157859 - MADE_03060 - KpsT protein 3035 43.43 0 3310853..3311971 + 372 196157860 - MADE_03061 - putative capsule polysaccharide export system inner membrane protein 3036 47.73 0 3312261..3313712 + 483 196157861 - MADE_03062 - putative proton-dependent peptide transporter 3037 42.57 0 3313812..3314114 + 100 196157862 - MADE_03063 - hypothetical protein 3038 46.33 0 3314111..3315133 + 340 196157863 - MADE_03064 - UDP-glucose 4-epimerase 3039 47.43 0 3315287..3316201 - 304 196157864 - MADE_03065 - Surface lipoprotein 3040 46.46 0 3316204..3317490 - 428 196157865 - MADE_03066 - putative cytochrome c-type biogenesis protein 3041 47.08 0 3317487..3318017 - 176 196157866 - MADE_03067 - Cytochrome c-type biogenesis protein CcmH 3042 44.70 0 3318014..3318673 - 219 196157867 - MADE_03068 - thiol:disulfide interchange protein dsbE (cytochrome c biogenesis protein ccmG) 3043 47.81 0 3318673..3320730 - 685 196157868 - MADE_03069 - Cytochrome c biogenesis factor 3044 47.27 0 3320734..3321228 - 164 196157869 - MADE_03070 - Cytochrome c-type biogenesis protein CcmE 3045 44.14 0 3321275..3321496 - 73 196157870 - MADE_03071 - heme exporter protein CcmD 3046 48.79 +1 3321498..3322280 - 260 196157871 - MADE_03072 - heme exporter protein C 3047 46.25 0 3322280..3322945 - 221 196157872 - MADE_03073 - ABC type heme exporter, permease subunit ccmB 3048 45.85 0 3322945..3323655 - 236 196157873 - MADE_03074 - ATP binding protein of heme exporter A 3049 46.48 0 3323877..3326462 + 861 196157874 - MADE_03075 - hypothetical protein 3050 44.03 0 3326474..3326791 + 105 196157875 - MADE_03076 - uncharacterized C-terminal FlhB domain-containing protein 3051 42.61 0 3326946..3328142 - 398 196157876 - MADE_03077 - putative ABC-type Na+ efflux pump, permease component 3052 44.65 0 3328126..3328947 - 273 196157877 - MADE_03078 - sodium ABC exporter ATP-binding protein 3053 46.13 0 3329252..3330298 - 348 196157878 - MADE_03079 - RecA protein (Recombinase A) 3054 46.30 0 3330419..3330958 - 179 196157879 - MADE_03080 - CinA-like protein 3055 48.96 +1 3331119..3333710 + 863 196157880 - MADE_03081 - DNA mismatch repair protein(MutS) 3056 47.49 0 3333847..3335478 + 543 196157881 - MADE_03082 - CTP synthetase 3057 47.56 0 3335538..3336830 + 430 196157882 - MADE_03083 - phosphopyruvate hydratase 3058 43.99 0 3336975..3337715 + 246 196157883 - MADE_03084 - hypothetical protein 3059 44.96 0 3338157..3339704 + 515 196157884 - MADE_03085 - 2-isopropylmalate synthase 3060 49.18 +1 3339705..3340802 + 365 196157885 - MADE_03086 - 3-isopropylmalate dehydrogenase 3061 50.54 +1 3340812..3342212 + 466 196157886 - MADE_03087 - isopropylmalate isomerase large subunit 3062 44.88 0 3342216..3342821 + 201 196157887 - MADE_03088 - isopropylmalate isomerase small subunit 3063 43.18 0 3343099..3344286 + 395 196157888 - MADE_03089 - metal-dependent phosphohydrolase domain 3064 48.08 0 3344449..3345696 - 415 196157889 - MADE_03090 - General secretion pathway protein B 3065 47.16 0 3345689..3346462 - 257 196157890 - MADE_03091 - putative ATPase and membrane protein 3066 46.90 0 3346820..3348013 + 397 196157891 - MADE_03092 - tRNA nucleotidyltransferase 3067 47.68 0 3348164..3349390 + 408 196157892 - MADE_03093 - ATP-dependent RNA helicase SrmB 3068 49.42 +1 3349601..3350203 + 200 196157893 - MADE_03094 - putative deoxyribonucleotide triphosphate pyrophosphatase 3069 47.86 0 3350310..3351335 + 341 196157894 - MADE_03095 - putative oxygen-independent coproporphyrinogen III oxidase 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0