version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2794 43.96 0 3065712..3065984 - 90 196157619 - MADE_02818 - hypothetical protein 2795 40.50 -1 3065990..3067120 - 376 196157620 - MADE_02819 - Prolyl 4-hydroxylase alpha subunit 2796 46.51 0 3067186..3069993 - 935 196157621 - MADE_02820 - TonB-dependent receptor 2797 44.92 0 3070319..3071776 - 485 196157622 - MADE_02821 - OmpA-related protein 2798 40.50 -1 3072003..3073091 - 362 196157623 - MADE_02822 - tryptophan 2,3-dioxygenase 2799 39.36 -1 3073414..3073695 + 93 196157624 - MADE_02823 - putative orphan protein 2800 47.31 0 3073894..3074952 - 352 196157625 - MADE_02824 - leucine dehydrogenase 2801 40.06 -1 3075387..3075728 + 113 196157626 - MADE_02825 - transcriptional regulator, AsnC family protein 2802 45.11 0 3075770..3076423 - 217 196157627 - MADE_02826 - maleylacetoacetate isomerase 2803 46.64 0 3076557..3077465 - 302 196157628 - MADE_02827 - 2-keto-4-pentenoate hydratase 2804 41.27 -1 3077549..3077674 + 41 196157629 - MADE_02828 - hypothetical protein 2805 45.34 0 3078033..3079589 - 518 196157630 - MADE_02829 - Transcriptional regulatory protein tyrR 2806 45.22 0 3079793..3080608 - 271 196157631 - MADE_02830 - Phenylalanine-4-hydroxylase 2807 45.41 0 3080796..3081242 - 148 196157632 - MADE_02831 - phage shock protein C 2808 44.58 0 3081239..3081478 - 79 196157633 - MADE_02832 - phage shock protein B 2809 41.23 -1 3081553..3082236 - 227 196157634 - MADE_02833 - phage shock protein A 2810 45.54 0 3082458..3083579 + 373 196157635 - MADE_02834 - sigma-54 depedent transcriptional activator PspF 2811 45.71 0 3083583..3085319 + 578 196157636 - MADE_02835 - putative ABC transporter, periplasmic peptide-binding protein 2812 44.58 0 3085352..3086347 + 331 196157637 - MADE_02836 - peptide transport protein (ABC superfamily, membrane) 2813 47.22 0 3086436..3087227 + 263 196157638 - MADE_02837 - peptide transport protein (ABC superfamily, membrane) 2814 47.59 0 3087229..3088224 + 331 196157639 - MADE_02838 - putative peptide ABC transporter, ATP-binding protein 2815 43.41 0 3088224..3089027 + 267 196157640 - MADE_02839 - peptide ABC transporter, ATP-binding protein 2816 47.48 0 3089145..3090275 - 376 196157641 - MADE_02840 - oxaloacetate decarboxylase, beta subunit 2817 48.15 0 3090279..3092093 - 604 196157642 - MADE_02841 - oxaloacetate decarboxylase 2818 41.55 0 3092112..3092318 - 68 196157643 - MADE_02842 - putative oxaloacetate decarboxylase subunit gamma 2819 36.81 -2 3092329..3092472 + 47 196157644 - MADE_02843 - oxaloacetate decarboxylase 2820 37.21 -2 3092995..3093123 - 42 196157645 - MADE_02844 - hypothetical protein 2821 43.23 0 3093375..3093566 - 63 196157646 - MADE_02845 - carbon storage regulator 2822 46.65 0 3093701..3096298 - 865 196157647 - MADE_02846 - alanyl-tRNA synthetase 2823 45.02 0 3096594..3097055 - 153 196157648 - MADE_02847 - Regulatory protein RecX 2824 44.69 0 3097175..3098512 + 445 196157649 - MADE_02848 - hypothetical protein 2825 47.27 0 3098502..3100589 + 695 196157650 - MADE_02849 - putative peptidase M13 family protein 2826 44.17 0 3100653..3100772 + 39 196157651 - MADE_02850 - hypothetical protein 2827 44.92 0 3100753..3101313 - 186 196157652 - MADE_02851 - putative transcriptional repressor for the cellular response to osmotic stress (TetR/AcrR family) protein 2828 47.22 0 3101402..3103828 - 808 196157653 - MADE_02852 - TonB-dependent receptor 2829 48.47 +1 3104046..3105683 - 545 196157654 - MADE_02853 - low affinity sulfate transporter 2830 46.79 0 3105695..3106348 - 217 196157655 - MADE_02854 - carbonic anhydrase 2831 46.54 0 3106507..3107475 + 322 196157656 - MADE_02855 - transcriptional regulator, LysR family protein 2832 46.62 0 3107493..3108380 + 295 196157657 - MADE_02856 - Transcriptional regulator 2833 43.51 0 3108442..3108726 - 94 196157658 - MADE_02857 - hypothetical protein 2834 47.88 0 3108751..3109341 - 196 196157659 - MADE_02858 - hypothetical protein 2835 47.05 0 3109380..3112004 - 874 196157660 - MADE_02859 - B12-dependent methionine synthase 2836 47.75 0 3112014..3113081 - 355 196157661 - MADE_02860 - B12-dependent methionine synthase 2837 46.86 0 3113085..3114023 - 312 196157662 - MADE_02861 - homoserine O-succinyltransferase 2838 43.68 0 3114190..3114624 - 144 196157663 - MADE_02862 - ATPase involved in DNA repair 2839 44.92 0 3114684..3115175 - 163 196157664 - MADE_02863 - chemotaxis protein CheW 2840 44.73 0 3115193..3116008 - 271 196157665 - MADE_02864 - CheW protein 2841 46.41 0 3116016..3116780 - 254 196157666 - MADE_02865 - putative ParA family protein 2842 47.12 0 3116809..3117918 - 369 196157667 - MADE_02866 - chemotaxis-specific methylesterase 2843 47.61 0 3117968..3120223 - 751 196157668 - MADE_02867 - chemotaxis protein cheA 2844 44.31 0 3120236..3120991 - 251 196157669 - MADE_02868 - chemotaxis protein cheZ 2845 41.16 -1 3121026..3121421 - 131 196157670 - MADE_02869 - chemotaxis protein CheY 2846 45.90 0 3121446..3122177 - 243 196157671 - MADE_02870 - flagellar biosynthesis sigma factor FliA 2847 47.87 0 3122174..3123040 - 288 196157672 - MADE_02871 - flagellar biosynthetic protein FlhG 2848 43.93 0 3123046..3124479 - 477 196157673 - MADE_02872 - flagellar biosynthesis protein 2849 47.24 0 3124509..3126608 - 699 196157674 - MADE_02873 - flagellar biosynthesis protein 2850 47.29 0 3126798..3127922 - 374 196157675 - MADE_02874 - flagellar biosynthesis protein 2851 44.36 0 3128011..3128790 - 259 196157676 - MADE_02875 - flagellar biosynthesis protein 2852 47.78 0 3128803..3129072 - 89 196157677 - MADE_02876 - flagellar biosynthesis 2853 44.84 0 3129081..3129836 - 251 196157678 - MADE_02877 - flagellar biosynthesis 2854 44.63 0 3129829..3130191 - 120 196157679 - MADE_02878 - polar flagellar assembly protein FliO 2855 45.10 0 3130310..3130717 - 135 196157680 - MADE_02879 - flagellar motor switch protein 2856 46.27 0 3130735..3131793 - 352 196157681 - MADE_02880 - flagellar motor switch protein 2857 49.44 +1 3131821..3132360 - 179 196157682 - MADE_02881 - flagellar basal body-associated protein 2858 34.78 -2 3132359..3132496 + 45 196157683 - MADE_02882 - hypothetical protein 2859 48.16 0 3132582..3134888 - 768 196157684 - MADE_02883 - polar flagellar hook-length control protein FliK 2860 41.23 -1 3135126..3135239 - 37 196157685 - MADE_02884 - hypothetical protein 2861 44.74 0 3135236..3135682 - 148 196157686 - MADE_02885 - Flagellar biosynthesis chaperone 2862 53.41 +2 3135755..3137089 - 444 196157687 - MADE_02886 - flagellum-specific ATP synthase 2863 46.87 0 3137082..3137864 - 260 196157688 - MADE_02887 - flagellar assembly protein 2864 45.82 0 3137919..3138959 - 346 196157689 - MADE_02888 - flagellar motor protein 2865 48.38 +1 3138972..3140666 - 564 196157690 - MADE_02889 - flagellar M-ring protein 2866 40.65 -1 3140679..3141047 - 122 196157691 - MADE_02890 - Flagellar hook-basal body protein 2867 48.36 +1 3141260..3142597 - 445 196157692 - MADE_02891 - flagellar regulatory protein C 2868 46.72 0 3142614..3143756 - 380 196157693 - MADE_02892 - putative sensory box sensor histidine kinase in two-component regulatory system 2869 36.81 -2 3143733..3143876 + 47 196157694 - MADE_02893 - hypothetical protein 2870 47.40 0 3143893..3145356 - 487 196157695 - MADE_02894 - polar flagellar protein FlaK 2871 41.85 0 3145561..3146358 - 265 196157696 - MADE_02895 - hag; flagellin 2872 40.34 -1 3146585..3147583 + 332 196157697 - MADE_02896 - polysaccharide biosynthesis protein 2873 40.26 -1 3147583..3148752 + 389 196157698 - MADE_02897 - putative DegT/DnrJ/EryC1/StrS aminotransferase 2874 40.00 -1 3148821..3149525 + 234 196157699 - MADE_02898 - putative Acylneuraminate cytidylyltransferase 2875 36.61 -2 3150319..3150837 - 172 196157700 - MADE_02899 - Methionyl-tRNA formyltransferase-like protein 2876 43.65 0 3151143..3151268 - 41 196157701 - MADE_02900 - ISMca4, transposase, OrfAB 2877 49.06 +1 3151737..3151895 - 52 196157702 - MADE_02901 - ISxcd1 transposase 2878 47.64 0 3152350..3153153 - 267 196157703 - MADE_02902 - Integrase, catalytic region 2879 41.67 0 3153156..3153419 - 87 196157704 - MADE_02903 - transposase ORF-A, IS-type 2880 39.78 -1 3153468..3153653 - 61 196157705 - MADE_02904 - putative orphan protein; putative transposase (IS66 family element,Orf2-like) 2881 47.40 0 3153956..3155590 - 544 196157706 - MADE_02905 - Transposase, IS4 family protein 2882 43.58 0 3156059..3157102 - 347 196157707 - MADE_02906 - probable transposase 2883 39.08 -1 3157321..3158364 - 347 196157708 - MADE_02907 - NeuB:Antifreeze-like protein 2884 32.54 -2 3158802..3158927 - 41 196157709 - MADE_02908 - hypothetical protein 2885 37.37 -2 3159020..3159688 - 222 196157710 - MADE_02909 - probable methionyl-tRNA formyltransferase 2886 39.97 -1 3159685..3160362 - 225 196157711 - MADE_02910 - putative LmbE-like protein 2887 39.66 -1 3160650..3162752 - 700 196157712 - MADE_02911 - Maf-1 2888 35.69 -2 3162764..3163060 - 98 196157713 - MADE_02912 - hypothetical protein 2889 38.33 -1 3163062..3163481 - 139 196157714 - MADE_02913 - Flagellin-specific chaperone FliS 2890 41.53 0 3163518..3164933 - 471 196157715 - MADE_02914 - Flagellar capping protein 2891 37.60 -2 3164962..3165477 - 171 196157716 - MADE_02915 - FlaG 2892 44.69 0 3165551..3166510 - 319 196157717 - MADE_02916 - flagellin 2893 45.21 0 3166998..3167957 - 319 196157718 - MADE_02917 - flagellin 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0