version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 212 46.93 0 230345..231322 + 325 196155037 - MADE_00214 - fructose-1,6-bisphosphatase 213 44.07 0 231487..232017 + 176 196155038 - MADE_00215 - inorganic pyrophosphatase 214 35.95 -2 232029..232181 - 50 196155039 - MADE_00216 - hypothetical protein 215 47.80 0 232180..232656 + 158 196155040 - MADE_00217 - lipoprotein, putative 216 46.64 0 232677..233375 - 232 196155041 - MADE_00218 - 2OG-Fe(II) oxygenase 217 40.71 -1 233398..233817 - 139 196155042 - MADE_00219 - thioesterase family protein 218 47.44 0 234003..235505 + 500 196155043 - MADE_00220 - putative heat shock protein 70 family protein 219 42.55 0 235571..235711 - 46 196155044 - MADE_00221 - excinuclease ABC subunit A 220 38.46 -1 235681..235797 + 38 196155045 - MADE_00222 - hypothetical protein 221 48.62 +1 235942..238773 - 943 196155046 - MADE_00223 - excinuclease ABC subunit A 222 41.67 0 239224..239355 + 43 196155047 - MADE_00224 - hypothetical protein 223 48.46 +1 239379..240707 + 442 196155048 - MADE_00225 - transporter, putative 224 47.86 0 240776..241360 + 194 196155049 - MADE_00226 - hypothetical phosphatase/phosphohexomutase 225 43.77 0 241435..242028 - 197 196155050 - MADE_00227 - hypothetical protein 226 42.36 0 242261..243124 + 287 196155051 - MADE_00228 - hypothetical protein 227 46.78 0 243556..244611 - 351 196155052 - MADE_00229 - putative GalR repressor of contiguous operon, likely to bind a galactoside 228 45.45 0 244884..245906 + 340 196155053 - MADE_00230 - aldose 1-epimerase 229 46.67 0 246142..247131 + 329 196155054 - MADE_00231 - galactose-1-phosphate uridylyltransferase 230 48.33 +1 247124..248263 + 379 196155055 - MADE_00232 - galactokinase 231 37.25 -2 248405..248608 - 67 196155056 - MADE_00233 - hypothetical protein 232 45.04 0 248631..250193 + 520 196155057 - MADE_00234 - putative sodium/hexose cotransport protein 233 50.93 +1 250458..251048 + 196 196155058 - MADE_00235 - single-strand binding protein 234 41.22 -1 251322..252221 + 299 196155059 - MADE_00236 - hypothetical protein 235 47.11 0 252438..255014 - 858 196155060 - MADE_00237 - membrane of secreted protein 236 49.75 +1 255032..256048 - 338 196155061 - MADE_00238 - UDP-glucose 4-epimerase 237 45.46 0 256059..258350 - 763 196155062 - MADE_00239 - beta-galactosidase 238 42.29 0 258349..258549 + 66 196155063 - MADE_00240 - hypothetical protein 239 45.90 0 258519..261176 - 885 196155064 - MADE_00241 - TonB-dependent receptor 240 48.01 0 261622..263106 - 494 196155065 - MADE_00242 - probable carbohydrate kinase 241 43.48 0 263268..264026 + 252 196155066 - MADE_00243 - Glycerol-3-phosphate regulon repressor 242 46.20 0 264290..265828 + 512 196155067 - MADE_00244 - sn-glycerol-3-phosphate dehydrogenase FAD binding; dioxygen as acceptor 243 41.88 0 265973..266557 + 194 196155068 - MADE_00245 - hypothetical protein 244 44.84 0 266680..267183 + 167 196155069 - MADE_00246 - hypothetical protein 245 44.81 0 267350..268264 + 304 196155070 - MADE_00247 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV) 246 42.58 0 268261..268887 + 208 196155071 - MADE_00248 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV) 247 45.37 0 268862..269509 + 215 196155072 - MADE_00249 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV) 248 43.94 0 269516..269845 + 109 196155073 - MADE_00250 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshK (pilus type IV), lipoprotein 249 46.32 0 269868..271577 + 569 196155074 - MADE_00251 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV) 250 47.18 0 271580..272482 + 300 196155075 - MADE_00252 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshM (pilus type IV) 251 49.88 +1 272479..273735 + 418 196155076 - MADE_00253 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshN (pilus type IV) 252 47.05 0 273735..275447 + 570 196155077 - MADE_00254 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV) 253 43.77 0 275447..276682 + 411 196155078 - MADE_00255 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV) 254 44.65 0 276711..277205 + 164 196155079 - MADE_00256 - hypothetical protein 255 48.64 +1 277250..277837 + 195 196155080 - MADE_002567 - Pilin protein 256 46.14 0 277860..278351 + 163 196155081 - MADE_00258 - MSHA pilin protein MshA 257 47.62 0 278353..278814 + 153 196155082 - MADE_00259 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshC (pilus type IV) 258 44.99 0 278789..279397 + 202 196155083 - MADE_00260 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshD (pilus type IV) 259 42.20 0 279397..280152 + 251 196155084 - MADE_00261 - Tfp pilus assembly protein PilW 260 43.94 0 280142..280603 + 153 196155085 - MADE_00262 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshP (pilus type IV) 261 46.68 0 280783..284289 + 1168 196155086 - MADE_00263 - putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (pilus type IV) 262 48.75 +1 284644..285687 + 347 196155087 - MADE_00264 - rod shape-determining protein MreB 263 47.84 0 285782..286615 + 277 196155088 - MADE_00265 - Rod shape-determining protein 264 44.66 0 286626..287084 + 152 196155089 - MADE_00266 - rod shape-determining protein MreD 265 47.04 0 287121..287711 + 196 196155090 - MADE_00267 - septum formation protein Maf 266 45.54 0 287708..289174 + 488 196155091 - MADE_00268 - cytoplasmic axial filament protein 267 46.17 0 289201..293196 + 1331 196155092 - MADE_00269 - putative protease 268 46.15 0 293189..294007 + 272 196155093 - MADE_00270 - predicted amidohydrolase, nitrilase family protein 269 49.90 +1 293970..295442 + 490 196155094 - MADE_00271 - putative suppressor of CsrA inhibitory activity; putative peptidase; involved in the control of DNA gyrase 270 45.70 0 295542..296099 - 185 196155095 - MADE_00272 - hypothetical protein 271 47.30 0 296172..297503 + 443 196155096 - MADE_00273 - pmbA protein 272 45.38 0 297583..298437 - 284 196155097 - MADE_00274 - transcriptional regulator, AraC family protein 273 47.98 0 298542..301667 + 1041 196155098 - MADE_00275 - beta-D-galactosidase 274 46.05 0 301849..302556 - 235 196155099 - MADE_00276 - aerobic respiration control protein ArcA 275 43.97 0 302711..304393 - 560 196155100 - MADE_00277 - Signal transduction histidine kinase (contains HAMP domain) 276 46.46 0 304466..305890 - 474 196155101 - MADE_00278 - glycogen synthase 277 45.24 0 306061..307143 - 360 196155102 - MADE_00279 - ribosomal RNA small subunit methyltransferase C 278 47.71 0 307143..307907 - 254 196155103 - MADE_00280 - tRNA (guanine-N(7)-)-methyltransferase 279 46.78 0 307954..308652 - 232 196155104 - MADE_00281 - putative hydrolase 280 48.69 +1 308793..309860 + 355 196155105 - MADE_00282 - A/G-specific adenine glycosylase 281 42.12 0 309914..310186 + 90 196155106 - MADE_00283 - Fe(II) trafficking protein YggX 282 44.74 0 310215..310328 + 37 196155107 - MADE_00284 - hypothetical protein 283 32.97 -2 311058..312155 + 365 196155108 - MADE_00285 - hypothetical protein 284 32.55 -2 312148..313299 + 383 196155109 - MADE_00286 - hypothetical protein 285 40.94 -1 313553..313894 + 113 196155110 - MADE_00287 - probable C-5 cytosine-specific DNA methylase 286 45.39 0 313977..314996 - 339 196155111 - MADE_00288 - hypothetical protein 287 44.66 0 315125..315883 + 252 196155112 - MADE_00289 - putative transmembrane protein 288 42.13 0 315905..316654 + 249 196155113 - MADE_00290 - hypothetical protein 289 44.22 0 316656..316949 - 97 196155114 - MADE_00291 - ribonuclease H-related protein 290 43.14 0 317008..317415 - 135 196155115 - MADE_00292 - hypothetical protein 291 44.87 0 317682..318149 - 155 196155116 - MADE_00293 - hypothetical protein 292 43.18 0 318168..320198 - 676 196155117 - MADE_00294 - ATPase, AAA family protein 293 42.62 0 320211..321104 - 297 196155118 - MADE_00295 - site-specific recombinase, phage integrase family protein 294 39.18 -1 321226..321858 - 210 196155119 - MADE_00296 - hypothetical protein 295 39.70 -1 322181..324286 + 701 196155120 - MADE_00297 - hypothetical Membrane Spanning Protein 296 39.71 -1 324455..325678 + 407 196155121 - MADE_00298 - UvrD/REP helicase 297 41.44 -1 325983..326870 + 295 196155122 - MADE_00299 - SMF protein 298 38.46 -1 326867..327100 + 77 196155123 - MADE_00300 - hypothetical protein 299 40.28 -1 327385..327528 + 47 196155124 - MADE_00301 - hypothetical protein 300 40.07 -1 328319..328585 - 88 196155125 - MADE_00302 - hypothetical protein 301 40.35 -1 328696..329208 - 170 196155126 - MADE_00303 - hypothetical protein 302 39.34 -1 329229..329927 - 232 196155127 - MADE_00304 - hypothetical protein 303 41.94 0 329932..333078 - 1048 196155128 - MADE_00305 - Heavy metal efflux pump CzcA 304 41.89 0 333091..334329 - 412 196155129 - MADE_00306 - Secretion protein HlyD 305 41.06 -1 334326..335528 - 400 196155130 - MADE_00307 - Outer membrane efflux protein 306 37.35 -2 335703..336647 - 314 196155131 - MADE_00308 - peptidase M56, BlaR1 307 39.18 -1 336656..336826 - 56 196155132 - MADE_00309 - Penicillinase repressor 308 41.47 -1 337187..338476 - 429 196155133 - MADE_00310 - site-specific recombinase, phage integrase family protein 309 41.43 -1 339940..340458 + 172 196155134 - MADE_00311 - putative metal-binding protein 310 38.00 -2 340702..341472 + 256 196155135 - MADE_00312 - methionyl-tRNA formyltransferase 311 35.96 -2 341839..341952 - 37 196155136 - MADE_00313 - hypothetical protein 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0