version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2405 41.73 0 2632115..2632900 + 261 196157230 - MADE_02429 - hypothetical protein 2406 45.19 0 2633062..2633871 + 269 196157231 - MADE_02430 - exodeoxyribonuclease III 2407 43.63 0 2633939..2634550 + 203 196157232 - MADE_02431 - hypothetical protein 2408 47.87 0 2634640..2635815 + 391 196157233 - MADE_02432 - hypothetical protein 2409 43.27 0 2635812..2637260 + 482 196157234 - MADE_02433 - sensor histide kinase 2410 41.92 0 2637272..2637772 - 166 196157235 - MADE_02434 - putative hypoxanthine phosphoribosyltransferase 2411 45.76 0 2637913..2639328 - 471 196157236 - MADE_02435 - lipoprotein releasing system transmembrane protein LolE 2412 45.17 0 2639503..2640102 + 199 196157237 - MADE_02436 - hypothetical protein 2413 48.68 +1 2640165..2643662 + 1165 196157238 - MADE_02437 - transcription-repair coupling factor 2414 48.82 +1 2643664..2645193 + 509 196157239 - MADE_02438 - hypothetical protein 2415 47.48 0 2645341..2645856 + 171 196157240 - MADE_02439 - putative vitamin B12 related Cobalamin adenosyltransferase 2416 48.78 +1 2645863..2646885 - 340 196157241 - MADE_02440 - beta-hexosaminidase 2417 49.76 +1 2646993..2649323 + 776 196157242 - MADE_02441 - putative hydrolase 2418 46.50 0 2649320..2649790 + 156 196157243 - MADE_02442 - ybaK/ebsC protein 2419 45.60 0 2649954..2650499 - 181 196157244 - MADE_02443 - hypothetical protein 2420 46.00 0 2650616..2650915 - 99 196157245 - MADE_02444 - integration host factor alpha subunit 2421 47.24 0 2650919..2653306 - 795 196157246 - MADE_02445 - phenylalanyl-tRNA synthetase beta subunit 2422 45.97 0 2653321..2654301 - 326 196157247 - MADE_02446 - phenylalanyl-tRNA synthetase alpha subunit 2423 38.49 -1 2654628..2655461 + 277 196157248 - MADE_02447 - phenylalanyl-tRNA synthetase alpha subunit 2424 37.87 -2 2655812..2656957 - 381 196157249 - MADE_02448 - glycosyl transferase, group 1 2425 40.32 -1 2657126..2658256 + 376 196157250 - MADE_02449 - Glycosyl transferase group 1 2426 40.05 -1 2658728..2659546 + 272 196157251 - MADE_02450 - hypothetical protein 2427 42.86 0 2660035..2660223 - 62 196157252 - MADE_02451 - phenylalanyl-tRNA synthetase alpha subunit 2428 36.88 -2 2660422..2662341 + 639 196157253 - MADE_02452 - putative lipopolysaccharide modification acyltransferase 2429 47.40 0 2662945..2663925 + 326 196157254 - MADE_02453 - IS5 transposase 2430 35.28 -2 2664078..2664692 + 204 196157255 - MADE_02454 - acyltransferase 3 2431 38.42 -1 2665147..2665893 + 248 196157256 - MADE_02455 - glycosyltransferase 2432 48.39 +1 2665964..2667457 + 497 196157257 - MADE_02456 - putative orphan protein; putative transposase 2433 46.89 0 2667477..2668199 + 240 196157258 - MADE_02457 - putative transposase 2434 42.44 0 2668479..2669576 - 365 196157259 - MADE_02458 - Glycosyl transferase, group 1 2435 37.78 -2 2669854..2669988 - 44 196157260 - MADE_02459 - hypothetical protein 2436 40.62 -1 2669990..2672377 + 795 196157261 - MADE_02460 - hypothetical protein 2437 39.89 -1 2672588..2673289 + 233 196157262 - MADE_02461 - hypothetical protein 2438 35.61 -2 2673456..2674202 + 248 196157263 - MADE_02462 - hypothetical protein 2439 38.02 -2 2674409..2675668 + 419 196157264 - MADE_02463 - putative glycosyl transferase in colanic acid gene cluster 2440 35.58 -2 2675821..2677287 - 488 196157265 - MADE_02464 - probable polysaccharide transport protein 2441 40.32 -1 2677356..2678285 - 309 196157266 - MADE_02465 - dolichyl-phosphate mannose synthase related protein 2442 37.40 -2 2678648..2679508 - 286 196157267 - MADE_02466 - glycosyl transferase 2443 39.98 -1 2679553..2680650 - 365 196157268 - MADE_02467 - glycosyltransferase 2444 37.49 -2 2680655..2681977 - 440 196157269 - MADE_02468 - hypothetical protein 2445 40.61 -1 2681980..2683119 - 379 196157270 - MADE_02469 - putative glycosyltransferase 2446 42.11 0 2683417..2684145 + 242 196157271 - MADE_02470 - periplasmic protein 2447 41.49 -1 2684145..2686082 + 645 196157272 - MADE_02471 - diguanylate cyclase/phosphodiesterase 2448 47.07 0 2686239..2686784 + 181 196157273 - MADE_02472 - hypothetical protein 2449 43.17 0 2686826..2688238 + 470 196157274 - MADE_02473 - O-antigen polymerase 2450 43.24 0 2688272..2688685 + 137 196157275 - MADE_02474 - hypothetical protein 2451 38.89 -1 2688682..2689437 - 251 196157276 - MADE_02475 - hypothetical protein 2452 43.65 0 2689430..2690098 - 222 196157277 - MADE_02476 - capsular polysaccharide biosynthesis protein, putative 2453 42.58 0 2690180..2692396 - 738 196157278 - MADE_02477 - putative Exopolysaccharide biosynthesis protein 2454 46.54 0 2692423..2692884 - 153 196157279 - MADE_02478 - Periplasmic protein involved in polysaccharide export 2455 43.79 0 2692968..2694143 - 391 196157280 - MADE_02479 - hypothetical protein 2456 41.51 0 2694853..2696307 + 484 196157281 - MADE_02480 - Sugar transferase involved in lipopolysaccharide synthesis 2457 43.40 0 2696337..2697746 + 469 196157282 - MADE_02481 - mannose-1-phosphate guanylyltransferase 2458 47.62 0 2697881..2698237 - 118 196157283 - MADE_02482 - 50S ribosomal protein L20 2459 43.43 0 2698256..2698453 - 65 196157284 - MADE_02483 - ribosomal protein L35 2460 47.13 0 2698572..2699006 - 144 196157285 - MADE_02484 - Translation initiation factor 3 2461 46.17 0 2699220..2701136 - 638 196157286 - MADE_02485 - threonyl-tRNA synthetase 2462 46.10 0 2701596..2702480 + 294 196157287 - MADE_02486 - hypothetical protein 2463 48.80 +1 2702532..2703281 + 249 196157288 - MADE_02487 - pteridine reductase 2464 47.47 0 2703326..2704351 + 341 196157289 - MADE_02488 - hypothetical protein 2465 47.37 0 2704358..2705461 - 367 196157290 - MADE_02489 - putative mechanosensitive channel protein (MscS family) 2466 43.06 0 2705567..2706193 - 208 196157291 - MADE_02490 - Abortive infection protein 2467 46.83 0 2706590..2707441 + 283 196157292 - MADE_02491 - putative rpiR-family transcriptional regulatory protein 2468 46.59 0 2707616..2708158 + 180 196157293 - MADE_02492 - hypothetical protein 2469 38.51 -1 2708190..2708363 + 57 196157294 - MADE_02493 - hypothetical protein 2470 48.19 0 2708406..2709677 + 423 196157295 - MADE_02494 - amidase 2471 50.57 +1 2709797..2711374 + 525 196157296 - MADE_02495 - gamma-glutamyltranspeptidase, putative 2472 48.72 +1 2711445..2712263 + 272 196157297 - MADE_02496 - hypothetical protein 2473 50.12 +1 2712274..2713554 + 426 196157298 - MADE_02497 - aminotransferase, class V 2474 48.62 +1 2713547..2714782 + 411 196157299 - MADE_02498 - N-carbamoyl-L-amino acid amidohydrolase 2475 48.91 +1 2714901..2715266 + 121 196157300 - MADE_02499 - hypothetical protein 2476 36.75 -2 2715299..2715415 - 38 196157301 - MADE_02500 - hypothetical protein 2477 46.33 0 2715775..2717328 + 517 196157302 - MADE_02501 - xanthine/uracil permease family protein 2478 45.84 0 2717572..2720001 + 809 196157303 - MADE_02502 - TonB-dependent receptor 2479 44.25 0 2720223..2720396 + 57 196157304 - MADE_02503 - hypothetical protein 2480 44.61 0 2720431..2722434 - 667 196157305 - MADE_02504 - Signal transduction histidine kinase 2481 44.19 0 2722596..2723516 - 306 196157306 - MADE_02505 - putative response regulator 2482 42.92 0 2723715..2723933 - 72 196157307 - MADE_02506 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2483 40.40 -1 2723984..2724280 - 98 196157308 - MADE_02507 - response regulator 2484 47.11 0 2724469..2724831 + 120 196157309 - MADE_02508 - probable sensor/response hybrid, putative 2485 43.72 0 2724951..2725961 - 336 196157310 - MADE_02509 - adenosine deaminase 2486 47.22 0 2726282..2727613 + 443 196157311 - MADE_02510 - Xanthine/uracil/vitamin C permease 2487 43.56 0 2727750..2728052 - 100 196157312 - MADE_02511 - hypothetical protein 2488 46.60 0 2728113..2728994 - 293 196157313 - MADE_02512 - hypothetical protein 2489 47.13 0 2729026..2729670 - 214 196157314 - MADE_02513 - transcriptional regulator, TetR family protein 2490 38.46 -1 2729827..2729943 + 38 196157315 - MADE_02514 - hypothetical protein 2491 46.02 0 2730051..2731493 + 480 196157316 - MADE_02515 - putative xanthine dehydrogenase, XdhA subunit 2492 49.01 +1 2731486..2733852 + 788 196157317 - MADE_02516 - xanthine dehydrogenase, molybdopterin binding subunit 2493 49.68 +1 2733849..2734790 + 313 196157318 - MADE_02517 - Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family protein 2494 46.52 0 2734864..2735280 + 138 196157319 - MADE_02518 - uricase-like protein 2495 49.55 +1 2735327..2735659 + 110 196157320 - MADE_02519 - Transthyretin 2496 46.56 0 2735665..2736972 + 435 196157321 - MADE_02520 - guanine deaminase 2497 46.14 0 2737004..2738284 + 426 196157322 - MADE_02521 - predicted membrane protein 2498 42.91 0 2738305..2739588 - 427 196157323 - MADE_02522 - putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator 2499 44.17 0 2739819..2740178 - 119 196157324 - MADE_02523 - hypothetical transcriptional regulator 2500 47.11 0 2740370..2740870 + 166 196157325 - MADE_02524 - putative aldehyde dehydrogenase subunit III 2501 48.96 +1 2740867..2743164 + 765 196157326 - MADE_02525 - Membrane-bound aldehyde dehydrogenase, large subunit 2502 44.24 0 2743339..2743833 - 164 196157327 - MADE_02526 - hypothetical protein 2503 44.76 0 2744094..2744732 + 212 196157328 - MADE_02527 - putative NADPH-quinone reductase 2504 46.81 0 2744770..2746668 + 632 196157329 - MADE_02528 - glutathione-regulated potassium-efflux system protein KefC 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0