IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2180	 45.51	0	2364750..2365685	-	311	196157005	-	MADE_02204	-	vitamin B12-transporter ATPase
2181	 48.77	+1	2365690..2366661	-	323	196157006	-	MADE_02205	-	putative hemin transport system permease transmembrane protein
2182	 44.51	0	2366677..2367150	-	157	196157007	-	MADE_02206	-	phosphotyrosine protein phosphatase
2183	 47.38	0	2367262..2367966	+	234	196157008	-	MADE_02207	-	peptidase E
2184	 47.29	0	2367937..2368638	-	233	196157009	-	MADE_02208	-	cobyrinic acid a,c-diamide synthase:dethiobiotin synthase
2185	 48.57	+1	2368635..2369612	-	325	196157010	-	MADE_02209	-	Biotin biosynthesis protein BioC
2186	 48.18	0	2369612..2371012	-	466	196157011	-	MADE_02210	-	8-amino-7-oxononanoate synthase
2187	 46.67	0	2371012..2372136	-	374	196157012	-	MADE_02211	-	Biotin synthase
2188	 47.56	0	2372208..2373500	+	430	196157013	-	MADE_02212	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2189	 42.53	0	2373619..2374140	+	173	196157014	-	MADE_02213	-	hypothetical protein
2190	 38.30	-1	2374511..2374792	+	93	196157015	-	MADE_02214	-	hypothetical protein
2191	 45.81	0	2374836..2376125	-	429	196157016	-	MADE_02215	-	CN5-related N-acetyltransferase
2192	 44.42	0	2376122..2377609	-	495	196157017	-	MADE_02216	-	glutathione synthase
2193	 41.37	-1	2377861..2378109	+	82	196157018	-	MADE_02217	-	putative sodium/calcium exchange protein
2194	 46.62	0	2378410..2379816	+	468	196157019	-	MADE_02218	-	putative amino acid permease
2195	 49.32	+1	2379943..2380599	-	218	196157020	-	MADE_02219	-	predicted transcription negative regulator
2196	 46.09	0	2380650..2381276	-	208	196157021	-	MADE_02220	-	hypothetical protein
2197	 43.92	0	2381406..2381915	+	169	196157022	-	MADE_02221	-	Thioesterase superfamily protein
2198	 48.59	+1	2382083..2384644	-	853	196157023	-	MADE_02222	-	putative TonB-dependent receptor
2199	 42.69	0	2385229..2385399	-	56	196157024	-	MADE_02223	-	hypothetical protein
2200	 43.17	0	2385589..2385771	+	60	196157025	-	MADE_02224	-	hypothetical protein
2201	 44.75	0	2385843..2386394	-	183	196157026	-	MADE_02225	-	putative alkylhydroperoxidase AhpD family core domain protein MED92
2202	 43.49	0	2386547..2387137	+	196	196157027	-	MADE_02226	-	transcriptional regulator, TetR family protein
2203	 43.06	0	2387216..2387698	-	160	196157028	-	MADE_02227	-	hypothetical protein
2204	 40.68	-1	2387784..2387960	-	58	196157029	-	MADE_02228	-	putative orphan protein
2205	 47.75	0	2387960..2389159	-	399	196157030	-	MADE_02229	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
2206	 48.33	+1	2389478..2390911	+	477	196157031	-	MADE_02230	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
2207	 48.34	+1	2390949..2392061	+	370	196157032	-	MADE_02231	-	putative ATP-binding protein in pho regulon
2208	 43.61	0	2392058..2392534	+	158	196157033	-	MADE_02232	-	hypothetical protein
2209	 43.47	0	2392650..2393507	+	285	196157034	-	MADE_02233	-	Mg/Co transporter
2210	 47.66	0	2393612..2395126	+	504	196157035	-	MADE_02234	-	apolipoprotein N-acyltransferase
2211	 42.77	0	2395279..2395596	+	105	196157036	-	MADE_02235	-	plasmid stabilization system
2212	 42.97	0	2395590..2395838	-	82	196157037	-	MADE_02236	-	Antitoxin of toxin-antitoxin system Phd
2213	 47.76	0	2396030..2398108	-	692	196157038	-	MADE_02237	-	phosphate acetyltransferase
2214	 46.53	0	2398213..2399394	-	393	196157039	-	MADE_02238	-	acetate/propionate kinase
2215	 42.32	0	2399803..2400258	+	151	196157040	-	MADE_02239	-	small heat shock protein
2216	 45.04	0	2400368..2400760	-	130	196157041	-	MADE_02240	-	hypothetical protein
2217	 45.74	0	2400846..2401385	-	179	196157042	-	MADE_02241	-	hypothetical protein
2218	 43.72	0	2401647..2402108	-	153	196157043	-	MADE_02242	-	Transcription elongation factor GreA
2219	 49.04	+1	2402241..2405462	-	1073	196157044	-	MADE_02243	-	carbamoyl-phosphate synthase large subunit
2220	 45.50	0	2405476..2406798	-	440	196157045	-	MADE_02244	-	carbamoyl-phosphate synthase small subunit
2221	 47.01	0	2406959..2407762	-	267	196157046	-	MADE_02245	-	dihydrodipicolinate reductase
2222	 45.26	0	2408172..2408867	+	231	196157047	-	MADE_02246	-	cytochrome b561 family protein
2223	 43.45	0	2408908..2409075	+	55	196157048	-	MADE_02247	-	hypothetical protein
2224	 47.72	0	2409116..2411026	-	636	196157049	-	MADE_02248	-	Propionyl CoA synthase
2225	 42.26	0	2411169..2413745	-	858	196157050	-	MADE_02249	-	sensory box/GGDEF/EAL domain protein
2226	 37.72	-2	2414083..2414196	+	37	196157051	-	MADE_02250	-	hypothetical protein
2227	 46.00	0	2414193..2414705	-	170	196157052	-	MADE_02251	-	cytochrome c
2228	 49.49	+1	2415134..2416303	-	389	196157053	-	MADE_02252	-	Chaperone protein dnaJ
2229	 45.78	0	2416498..2418426	-	642	196157054	-	MADE_02253	-	Chaperone protein dnaK
2230	 48.74	+1	2418544..2419179	-	211	196157055	-	MADE_02254	-	heat shock protein GrpE
2231	 40.35	-1	2419170..2419283	-	37	196157056	-	MADE_02255	-	hypothetical protein
2232	 45.75	0	2419428..2422448	+	1006	196157057	-	MADE_02256	-	Multidomain protein, contains Na+/proline symporter PutP-like domain, sensory histidine kinase and receiver domain
2233	 47.95	0	2422445..2423272	-	275	196157058	-	MADE_02257	-	putative transposase
2234	 45.73	0	2423485..2423976	-	163	196157059	-	MADE_02258	-	transposase IS3/IS911 family protein
2235	 44.35	0	2424061..2424432	+	123	196157060	-	MADE_02259	-	two-component sensor histidine kinase
2236	 43.65	0	2424473..2425141	-	222	196157061	-	MADE_02260	-	Response regulator, LuxR family (CheY, HTH domains)
2237	 47.20	0	2425342..2427720	-	792	196157062	-	MADE_02261	-	putative TonB-dependent receptor
2238	 48.87	+1	2428044..2429330	+	428	196157063	-	MADE_02262	-	GntP family permease
2239	 34.21	-2	2429317..2429430	-	37	196157064	-	MADE_02263	-	hypothetical protein
2240	 45.82	0	2429395..2430828	+	477	196157065	-	MADE_02264	-	homoserine O-acetyltransferase
2241	 47.18	0	2430825..2431886	+	353	196157066	-	MADE_02265	-	poly (3-hydroxybutyrate) depolymerase
2242	 47.53	0	2431879..2432646	+	255	196157067	-	MADE_02266	-	putative 3-hydroxybutyrate dehydrogenase
2243	 49.10	+1	2432767..2433927	-	386	196157068	-	MADE_02267	-	alcohol dehydrogenase, iron-containing
2244	 45.32	0	2434264..2435139	+	291	196157069	-	MADE_02268	-	NAD kinase
2245	 45.88	0	2435395..2435904	+	169	196157070	-	MADE_02269	-	stress response DNA-binding protein Dps
2246	 44.54	0	2436213..2437898	+	561	196157071	-	MADE_02270	-	ATPase involved in DNA repair, RecN
2247	 37.84	-2	2438158..2438379	+	73	196157072	-	MADE_02271	-	SmpA/OmlA family protein
2248	 45.57	0	2438489..2439142	+	217	196157073	-	MADE_02272	-	thiopurine S-methyltransferase family protein
2249	 44.55	0	2439308..2440618	-	436	196157074	-	MADE_02273	-	HlyD family secretion protein
2250	 46.58	0	2440621..2442303	-	560	196157075	-	MADE_02274	-	Type I secretion system ATPase, PrtD
2251	 42.02	0	2442347..2443048	-	233	196157076	-	MADE_02275	-	hypothetical protein
2252	 46.84	0	2443264..2462094	-	6276	196157077	-	MADE_02276	-	vcbs repeat-containing protein
2253	 41.86	0	2462139..2462267	-	42	196157078	-	MADE_02277	-	hypothetical protein
2254	 46.38	0	2462787..2462924	-	45	196157079	-	MADE_02278	-	hypothetical protein
2255	 43.07	0	2463489..2464628	-	379	196157080	-	MADE_02279	-	hypothetical protein
2256	 42.41	0	2465470..2466141	+	223	196157081	-	MADE_02280	-	hypothetical protein
2257	 44.85	0	2466178..2466750	+	190	196157082	-	MADE_02281	-	Acetyltransferase (isoleucine patch superfamily) protein
2258	 44.78	0	2466937..2467740	-	267	196157083	-	MADE_02282	-	2,5-diketo-D-gluconate reductase B
2259	 49.50	+1	2467972..2468868	-	298	196157084	-	MADE_02283	-	pseudouridine synthase (makes pseudouridine2605 in 23 S RNA)
2260	 45.45	0	2468909..2469502	-	197	196157085	-	MADE_02284	-	hypothetical protein
2261	 43.87	0	2469489..2470352	-	287	196157086	-	MADE_02285	-	chromosome segregation and condensation protein ScpA
2262	 46.70	0	2470462..2471082	-	206	196157087	-	MADE_02286	-	Sua5/YciO/YrdC/YwlC family protein
2263	 47.32	0	2471234..2472127	-	297	196157088	-	MADE_02287	-	PHP domain protein
2264	 48.37	+1	2472407..2474095	+	562	196157089	-	MADE_02288	-	anthranilate synthase component I
2265	 47.71	0	2474092..2474724	+	210	196157090	-	MADE_02289	-	glutamine amido-transferase
2266	 50.39	+1	2474717..2475748	+	343	196157091	-	MADE_02290	-	anthranilate phosphoribosyltransferase
2267	 46.95	0	2475741..2477150	+	469	196157092	-	MADE_02291	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
2268	 48.14	0	2477172..2478353	+	393	196157093	-	MADE_02292	-	tryptophan synthase, beta protein
2269	 49.75	+1	2478371..2479162	+	263	196157094	-	MADE_02293	-	tryptophan synthase subunit alpha
2270	 53.26	+2	2479177..2479467	+	96	196157095	-	MADE_02294	-	hypothetical protein
2271	 44.67	0	2479744..2480184	-	146	196157096	-	MADE_02295	-	general stress protein
2272	 45.99	0	2481086..2481322	+	78	196157097	-	MADE_02296	-	Propeptide, PepSY amd peptidase M4
2273	 43.26	0	2481324..2481998	+	224	196157098	-	MADE_02297	-	response regulator in two-component regulatory system with PhoQ
2274	 42.79	0	2481995..2483326	+	443	196157099	-	MADE_02298	-	sensor histidine kinase
2275	 42.58	0	2483677..2484714	-	345	196157100	-	MADE_02299	-	hypothetical protein
2276	 36.04	-2	2484794..2485162	+	122	196157101	-	MADE_02300	-	D-erythro-7,8-dihydroneopterin triphosphate epimerase
2277	 46.55	0	2485198..2486082	+	294	196157102	-	MADE_02301	-	putative sugar nucleotide epimerase
2278	 45.94	0	2486413..2488935	-	840	196157103	-	MADE_02302	-	ABC-type transport system, permease component
2279	 45.06	0	2488936..2489634	-	232	196157104	-	MADE_02303	-	putative Lipoprotein releasing system ATP-binding component of ABC transporter
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.