IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1510	 45.76	0	1633868..1635235	+	455	196156335	-	MADE_01524	-	Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
1511	 47.85	0	1635264..1635821	-	185	196156336	-	MADE_01525	-	lipoprotein
1512	 48.57	+1	1636100..1638895	+	931	196156337	-	MADE_01526	-	glycosyl hydrolase, BNR repeat-containing protein
1513	 45.40	0	1638879..1639226	+	115	196156338	-	MADE_01527	-	hypothetical protein
1514	 45.68	0	1639378..1641540	-	720	196156339	-	MADE_01528	-	TonB-dependent receptor
1515	 46.88	0	1641827..1643701	+	624	196156340	-	MADE_01529	-	putative orphan protein
1516	 50.93	+1	1643775..1644257	+	160	196156341	-	MADE_01530	-	hypothetical protein
1517	 44.44	0	1644276..1645139	-	287	196156342	-	MADE_01531	-	putative MadN protein
1518	 46.90	0	1645211..1646080	-	289	196156343	-	MADE_01532	-	glycerol uptake facilitator protein GlpF
1519	 41.67	0	1646440..1646571	-	43	196156344	-	MADE_01533	-	hypothetical protein
1520	 47.79	0	1646806..1648749	+	647	196156345	-	MADE_01534	-	Outer membrane receptor for ferrienterochelin and colicins
1521	 46.19	0	1648990..1650132	+	380	196156346	-	MADE_01535	-	hypothetical protein
1522	 47.65	0	1650135..1651091	+	318	196156347	-	MADE_01536	-	ABC-type hemin transport system, periplasmic component
1523	 49.78	+1	1651091..1652227	+	378	196156348	-	MADE_01537	-	ABC-type hemin transport system, pemease component
1524	 45.25	0	1652233..1653063	+	276	196156349	-	MADE_01538	-	ABC-type hemin transport system, ATPase component
1525	 45.22	0	1653101..1653832	+	243	196156350	-	MADE_01539	-	uncharacterized metal-binding protein
1526	 44.11	0	1653807..1654103	-	98	196156351	-	MADE_01540	-	hypothetical protein
1527	 38.44	-1	1654111..1654404	+	97	196156352	-	MADE_01541	-	Stress responsive alpha-beta barrel
1528	 42.33	0	1654478..1655188	+	236	196156353	-	MADE_01542	-	hypothetical protein
1529	 43.81	0	1655282..1655701	+	139	196156354	-	MADE_01543	-	probable RTX (repeat in structural toxin)
1530	 44.18	0	1655807..1656313	+	168	196156355	-	MADE_01544	-	hypothetical protein
1531	 44.80	0	1656384..1657421	+	345	196156356	-	MADE_01545	-	ISCps1, transposase
1532	 44.24	0	1657605..1659548	+	647	196156357	-	MADE_01546	-	hypothetical protein
1533	 44.61	0	1662355..1663347	+	330	196156358	-	MADE_01549	-	cytochrome-c peroxidase
1534	 46.23	0	1663599..1665413	+	604	196156359	-	MADE_01550	-	hypothetical protein
1535	 47.46	0	1665410..1666237	-	275	196156360	-	MADE_01551	-	integrase
1536	 44.90	0	1666285..1666578	-	97	196156361	-	MADE_01552	-	transposase, IS911
1537	 41.57	0	1666723..1667220	+	165	196156362	-	MADE_01553	-	hypothetical protein
1538	 45.25	0	1667486..1669357	+	623	196156363	-	MADE_01554	-	1,4-alpha-glucan branching enzyme
1539	 43.21	0	1669535..1670425	-	296	196156364	-	MADE_01555	-	transport protein
1540	 39.84	-1	1670452..1670697	-	81	196156365	-	MADE_01556	-	hypothetical protein
1541	 47.38	0	1670995..1672083	+	362	196156366	-	MADE_01557	-	glucose-fructose oxidoreductase
1542	 42.55	0	1672065..1672205	-	46	196156367	-	MADE_01558	-	hypothetical protein
1543	 46.46	0	1672198..1673271	-	357	196156368	-	MADE_01559	-	hypothetical protein
1544	 44.36	0	1673362..1674150	-	262	196156369	-	MADE_01560	-	lipase-related protein
1545	 47.34	0	1674347..1674703	-	118	196156370	-	MADE_01561	-	translation initiation inhibitor
1546	 41.24	-1	1674974..1675150	+	58	196156371	-	MADE_01562	-	Prevent-host-death protein
1547	 38.01	-2	1675164..1675484	+	106	196156372	-	MADE_01563	-	hypothetical protein
1548	 40.23	-1	1675944..1676204	+	86	196156373	-	MADE_01564	-	predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
1549	 44.22	0	1676191..1676484	+	97	196156374	-	MADE_01565	-	Plasmid stabilization system A
1550	 43.44	0	1677013..1678110	-	365	196156375	-	MADE_01566	-	hypothetical protein
1551	 45.82	0	1678139..1679203	-	354	196156376	-	MADE_01567	-	putative orphan protein; putative signal peptide
1552	 47.26	0	1679300..1679773	-	157	196156377	-	MADE_01568	-	putative unknown lipoprotein
1553	 47.58	0	1679878..1681470	-	530	196156378	-	MADE_01569	-	hypothetical protein
1554	 47.62	0	1681632..1682366	-	244	196156379	-	MADE_01570	-	hypothetical protein
1555	 46.25	0	1682363..1682896	-	177	196156380	-	MADE_01571	-	putative RNA polymerase sigma factor (ECF family) protein
1556	 47.50	0	1683066..1685126	-	686	196156381	-	MADE_01572	-	TonB-dependent receptor, putative
1557	 47.07	0	1685469..1685912	+	147	196156382	-	MADE_01573	-	RDD domain containing protein
1558	 48.12	0	1686023..1687084	-	353	196156383	-	MADE_01574	-	predicted permease
1559	 49.41	+1	1687085..1688185	-	366	196156384	-	MADE_01575	-	permease YjgP/YjgQ
1560	 50.45	+1	1688413..1689954	+	513	196156385	-	MADE_01576	-	leucyl aminopeptidase
1561	 50.35	+1	1689961..1690383	+	140	196156386	-	MADE_01577	-	DNA polymerase III chi subunit
1562	 49.26	+1	1690419..1693193	+	924	196156387	-	MADE_01578	-	valyl-tRNA synthetase
1563	 43.80	0	1693338..1696013	-	891	196156388	-	MADE_01579	-	Response regulator receiver:ATP-binding region, ATPase-like protein
1564	 46.88	0	1696064..1697347	-	427	196156389	-	MADE_01580	-	signal peptide prediction
1565	 43.46	0	1697534..1698382	+	282	196156390	-	MADE_01581	-	SPFH domain/Band 7 family protein
1566	 46.45	0	1698390..1698671	+	93	196156391	-	MADE_01582	-	hypothetical protein
1567	 41.84	0	1698776..1700209	-	477	196156392	-	MADE_01583	-	Response regulator containing a CheY-like receiver domain and a GGDEF domain
1568	 44.53	0	1700384..1701196	-	270	196156393	-	MADE_01584	-	hypothetical protein
1569	 47.37	0	1701310..1701708	-	132	196156394	-	MADE_01585	-	hypothetical protein
1570	 40.66	-1	1701741..1702409	-	222	196156395	-	MADE_01586	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1571	 45.26	0	1702672..1703811	+	379	196156396	-	MADE_01587	-	HD-GYP domain protein
1572	 50.47	+1	1703902..1705296	-	464	196156397	-	MADE_01588	-	two-component system, response regulator
1573	 42.91	0	1705301..1706386	-	361	196156398	-	MADE_01589	-	nitrogen regulation protein NR(II)
1574	 45.77	0	1706518..1707144	-	208	196156399	-	MADE_01590	-	hypothetical protein
1575	 46.74	0	1707428..1708837	-	469	196156400	-	MADE_01591	-	glutamine synthetase
1576	 46.37	0	1709296..1711128	+	610	196156401	-	MADE_01592	-	BipA protein
1577	 41.80	0	1711366..1711743	+	125	196156402	-	MADE_01593	-	rteB, two-component system response regulator
1578	 47.11	0	1711885..1713060	+	391	196156403	-	MADE_01594	-	Aminotransferase, class I and II
1579	 47.87	0	1713244..1714440	-	398	196156404	-	MADE_01595	-	putative manganese/divalent cation transport protein (NRAMP family)
1580	 44.87	0	1714681..1715382	+	233	196156405	-	MADE_01596	-	yecA family protein
1581	 45.50	0	1715422..1715610	-	62	196156406	-	MADE_01597	-	hypothetical protein
1582	 41.96	0	1715793..1716221	-	142	196156407	-	MADE_01598	-	hypothetical protein
1583	 46.44	0	1716223..1717839	-	538	196156408	-	MADE_01599	-	putative Voltage-gated ClC-type chloride channel clcA
1584	 42.35	0	1717982..1718713	+	243	196156409	-	MADE_01600	-	hypothetical protein
1585	 43.33	0	1718827..1719276	-	149	196156410	-	MADE_01601	-	azurin precursor
1586	 41.13	-1	1719378..1719518	+	46	196156411	-	MADE_01602	-	hypothetical protein
1587	 49.64	+1	1719690..1721063	+	457	196156412	-	MADE_01603	-	Fumarase
1588	 48.45	+1	1721415..1722188	+	257	196156413	-	MADE_01604	-	septum site-determining protein MinC
1589	 46.30	0	1722219..1723028	+	269	196156414	-	MADE_01605	-	septum site-determining protein MinD
1590	 46.74	0	1723028..1723288	+	86	196156415	-	MADE_01606	-	cell division topological specificity factor MinE
1591	 44.52	0	1723349..1724188	-	279	196156416	-	MADE_01607	-	UDP-galactose-lipid carrier transferase MED92
1592	 45.77	0	1724319..1725098	+	259	196156417	-	MADE_01608	-	hypothetical protein
1593	 45.87	0	1725250..1725600	+	116	196156418	-	MADE_01609	-	HesB protein family
1594	 45.55	0	1725749..1726321	+	190	196156419	-	MADE_01610	-	putative glutathione S-transferase enzyme with thioredoxin-like domain
1595	 48.97	+1	1726330..1727301	-	323	196156420	-	MADE_01611	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1596	 45.53	0	1727428..1729296	+	622	196156421	-	MADE_01612	-	homocysteine synthase
1597	 43.62	0	1729497..1729943	+	148	196156422	-	MADE_01613	-	hypothetical protein
1598	 49.38	+1	1730047..1731168	-	373	196156423	-	MADE_01614	-	xenobiotic reductase B
1599	 48.30	0	1731439..1732761	-	440	196156424	-	MADE_01615	-	regulator of pathogenicity factors
1600	 46.68	0	1733450..1734595	+	381	196156425	-	MADE_01616	-	putative fucose permease
1601	 48.13	0	1734646..1735848	-	400	196156426	-	MADE_01617	-	hypothetical protein
1602	 45.48	0	1735856..1737181	-	441	196156427	-	MADE_01618	-	Peptidase, M23/M37 family protein
1603	 41.84	0	1737400..1737540	+	46	196156428	-	MADE_01619	-	hypothetical protein
1604	 44.67	0	1737610..1738809	+	399	196156429	-	MADE_01620	-	tyrosyl-tRNA synthetase
1605	 47.90	0	1738989..1740347	-	452	196156430	-	MADE_01621	-	putative oxidoreductase
1606	 47.72	0	1740374..1740943	-	189	196156431	-	MADE_01622	-	acetyltransferase, GNAT family protein
1607	 41.04	-1	1740981..1741382	-	133	196156432	-	MADE_01623	-	hypothetical protein
1608	 45.74	0	1741537..1741947	-	136	196156433	-	MADE_01624	-	putative phage shock protein E
1609	 44.88	0	1742111..1743037	-	308	196156434	-	MADE_01625	-	ABC transporter, periplasmic substrate-binding protein, putative
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.