version 1.0
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282 4072 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1470 44.57 0 1594238..1594495 + 85 196156295 - MADE_01481 - suppressor of inhibitory function of ChpB 1471 44.25 0 1594495..1594833 + 112 196156296 - MADE_01482 - transcriptional modulator of MazE/toxin, MazF 1472 43.10 0 1594847..1595143 + 98 196156297 - MADE_01483 - hypothetical protein 1473 37.10 -2 1595134..1595319 + 61 196156298 - MADE_01484 - hypothetical protein 1474 39.66 -1 1595344..1595580 + 78 196156299 - MADE_01485 - hypothetical protein 1475 39.63 -1 1595878..1596258 + 126 196156300 - MADE_01486 - hypothetical protein 1476 41.67 0 1596314..1597381 - 355 196156301 - MADE_01487 - hypothetical protein 1477 38.39 -1 1597822..1598157 + 111 196156302 - MADE_01488 - hypothetical protein 1478 44.64 0 1598307..1598828 + 173 196156303 - MADE_01489 - ISSod6, transposase 1479 45.28 0 1599060..1599578 + 172 196156304 - MADE_01490 - putative ketodeoxygluconokinase 1480 46.90 0 1599643..1600254 + 203 196156305 - MADE_01491 - putative 4-hydroxy-2-oxoglutarate aldolase 1481 39.52 -1 1600218..1600427 + 69 196156306 - MADE_01492 - hypothetical protein 1482 44.13 0 1600462..1601628 + 388 196156307 - MADE_01493 - hypothetical protein 1483 43.10 0 1601628..1602047 + 139 196156308 - MADE_01494 - hypothetical protein 1484 42.82 0 1602076..1603446 - 456 196156309 - MADE_01495 - sensory box/GGDEF family protein 1485 39.32 -1 1603443..1604294 - 283 196156310 - MADE_01496 - hypothetical protein 1486 44.70 0 1604702..1606144 + 480 196156311 - MADE_01497 - ATP-dependent RNA helicase RhlE 1487 41.91 0 1606307..1606924 - 205 196156312 - MADE_01498 - thiol-disulfide isomerase 1488 45.62 0 1607024..1608472 - 482 196156313 - MADE_01499 - 2-keto-4-pentenoate hydratase, putative 1489 41.70 0 1608511..1609167 - 218 196156314 - MADE_01500 - response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) protein 1490 48.39 +1 1609375..1611897 - 840 196156315 - MADE_01501 - putative secreted serine protease, subtilisin family, possibly excreted 1491 39.18 -1 1612338..1612850 + 170 196156316 - MADE_01502 - minor curlin subunit CsgB, putative 1492 44.35 0 1612875..1614326 + 483 196156317 - MADE_01503 - putative secreted major subunit of curlin, may bind calcium 1493 42.75 0 1614368..1614760 + 130 196156318 - MADE_01504 - curli production assembly/transport component 1494 42.76 0 1614754..1615209 + 151 196156319 - MADE_01505 - putative curli production assembly/transport component 1495 46.85 0 1615218..1615979 + 253 196156320 - MADE_01506 - putative transport protein for curli synthesis 1496 42.92 0 1616006..1616485 - 159 196156321 - MADE_01507 - putative transcriptional regulator, LuxR family protein 1497 36.67 -2 1616851..1616970 - 39 196156322 - MADE_01508 - hypothetical protein 1498 33.33 -2 1616957..1617073 - 38 196156323 - MADE_01509 - hypothetical protein 1499 46.08 0 1617084..1618817 + 577 196156324 - MADE_01510 - D-lactate dehydrogenase 1500 47.37 0 1619005..1621035 + 676 196156325 - MADE_01511 - putative high-affinity choline transport protein 1501 49.43 +1 1621174..1622049 - 291 196156326 - MADE_01512 - 3-hydroxyisobutyrate dehydrogenase 1502 49.40 +1 1622064..1623563 - 499 196156327 - MADE_01513 - methylmalonate-semialdehyde dehydrogenase, putative 1503 42.99 0 1623677..1624546 + 289 196156328 - MADE_01514 - transcriptional regulatory protein 1504 44.05 0 1624607..1625950 + 447 196156329 - MADE_01515 - sensor histidine kinase 1505 40.33 -1 1625947..1626246 + 99 196156330 - MADE_01516 - DNA-binding response regulator, LuxR family protein 1506 46.58 0 1626277..1627197 + 306 196156331 - MADE_01517 - transposase 1507 49.06 +1 1629358..1630476 + 372 196156332 - MADE_01521 - S-adenosyl-L-homocysteine hydrolase 1508 47.10 0 1630617..1631822 + 401 196156333 - MADE_01522 - putative metal-dependent dipeptidase 1509 48.42 +1 1631849..1633552 - 567 196156334 - MADE_01523 - hypothetical protein 1510 45.76 0 1633868..1635235 + 455 196156335 - MADE_01524 - Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase 1511 47.85 0 1635264..1635821 - 185 196156336 - MADE_01525 - lipoprotein 1512 48.57 +1 1636100..1638895 + 931 196156337 - MADE_01526 - glycosyl hydrolase, BNR repeat-containing protein 1513 45.40 0 1638879..1639226 + 115 196156338 - MADE_01527 - hypothetical protein 1514 45.68 0 1639378..1641540 - 720 196156339 - MADE_01528 - TonB-dependent receptor 1515 46.88 0 1641827..1643701 + 624 196156340 - MADE_01529 - putative orphan protein 1516 50.93 +1 1643775..1644257 + 160 196156341 - MADE_01530 - hypothetical protein 1517 44.44 0 1644276..1645139 - 287 196156342 - MADE_01531 - putative MadN protein 1518 46.90 0 1645211..1646080 - 289 196156343 - MADE_01532 - glycerol uptake facilitator protein GlpF 1519 41.67 0 1646440..1646571 - 43 196156344 - MADE_01533 - hypothetical protein 1520 47.79 0 1646806..1648749 + 647 196156345 - MADE_01534 - Outer membrane receptor for ferrienterochelin and colicins 1521 46.19 0 1648990..1650132 + 380 196156346 - MADE_01535 - hypothetical protein 1522 47.65 0 1650135..1651091 + 318 196156347 - MADE_01536 - ABC-type hemin transport system, periplasmic component 1523 49.78 +1 1651091..1652227 + 378 196156348 - MADE_01537 - ABC-type hemin transport system, pemease component 1524 45.25 0 1652233..1653063 + 276 196156349 - MADE_01538 - ABC-type hemin transport system, ATPase component 1525 45.22 0 1653101..1653832 + 243 196156350 - MADE_01539 - uncharacterized metal-binding protein 1526 44.11 0 1653807..1654103 - 98 196156351 - MADE_01540 - hypothetical protein 1527 38.44 -1 1654111..1654404 + 97 196156352 - MADE_01541 - Stress responsive alpha-beta barrel 1528 42.33 0 1654478..1655188 + 236 196156353 - MADE_01542 - hypothetical protein 1529 43.81 0 1655282..1655701 + 139 196156354 - MADE_01543 - probable RTX (repeat in structural toxin) 1530 44.18 0 1655807..1656313 + 168 196156355 - MADE_01544 - hypothetical protein 1531 44.80 0 1656384..1657421 + 345 196156356 - MADE_01545 - ISCps1, transposase 1532 44.24 0 1657605..1659548 + 647 196156357 - MADE_01546 - hypothetical protein 1533 44.61 0 1662355..1663347 + 330 196156358 - MADE_01549 - cytochrome-c peroxidase 1534 46.23 0 1663599..1665413 + 604 196156359 - MADE_01550 - hypothetical protein 1535 47.46 0 1665410..1666237 - 275 196156360 - MADE_01551 - integrase 1536 44.90 0 1666285..1666578 - 97 196156361 - MADE_01552 - transposase, IS911 1537 41.57 0 1666723..1667220 + 165 196156362 - MADE_01553 - hypothetical protein 1538 45.25 0 1667486..1669357 + 623 196156363 - MADE_01554 - 1,4-alpha-glucan branching enzyme 1539 43.21 0 1669535..1670425 - 296 196156364 - MADE_01555 - transport protein 1540 39.84 -1 1670452..1670697 - 81 196156365 - MADE_01556 - hypothetical protein 1541 47.38 0 1670995..1672083 + 362 196156366 - MADE_01557 - glucose-fructose oxidoreductase 1542 42.55 0 1672065..1672205 - 46 196156367 - MADE_01558 - hypothetical protein 1543 46.46 0 1672198..1673271 - 357 196156368 - MADE_01559 - hypothetical protein 1544 44.36 0 1673362..1674150 - 262 196156369 - MADE_01560 - lipase-related protein 1545 47.34 0 1674347..1674703 - 118 196156370 - MADE_01561 - translation initiation inhibitor 1546 41.24 -1 1674974..1675150 + 58 196156371 - MADE_01562 - Prevent-host-death protein 1547 38.01 -2 1675164..1675484 + 106 196156372 - MADE_01563 - hypothetical protein 1548 40.23 -1 1675944..1676204 + 86 196156373 - MADE_01564 - predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain 1549 44.22 0 1676191..1676484 + 97 196156374 - MADE_01565 - Plasmid stabilization system A 1550 43.44 0 1677013..1678110 - 365 196156375 - MADE_01566 - hypothetical protein 1551 45.82 0 1678139..1679203 - 354 196156376 - MADE_01567 - putative orphan protein; putative signal peptide 1552 47.26 0 1679300..1679773 - 157 196156377 - MADE_01568 - putative unknown lipoprotein 1553 47.58 0 1679878..1681470 - 530 196156378 - MADE_01569 - hypothetical protein 1554 47.62 0 1681632..1682366 - 244 196156379 - MADE_01570 - hypothetical protein 1555 46.25 0 1682363..1682896 - 177 196156380 - MADE_01571 - putative RNA polymerase sigma factor (ECF family) protein 1556 47.50 0 1683066..1685126 - 686 196156381 - MADE_01572 - TonB-dependent receptor, putative 1557 47.07 0 1685469..1685912 + 147 196156382 - MADE_01573 - RDD domain containing protein 1558 48.12 0 1686023..1687084 - 353 196156383 - MADE_01574 - predicted permease 1559 49.41 +1 1687085..1688185 - 366 196156384 - MADE_01575 - permease YjgP/YjgQ 1560 50.45 +1 1688413..1689954 + 513 196156385 - MADE_01576 - leucyl aminopeptidase 1561 50.35 +1 1689961..1690383 + 140 196156386 - MADE_01577 - DNA polymerase III chi subunit 1562 49.26 +1 1690419..1693193 + 924 196156387 - MADE_01578 - valyl-tRNA synthetase 1563 43.80 0 1693338..1696013 - 891 196156388 - MADE_01579 - Response regulator receiver:ATP-binding region, ATPase-like protein 1564 46.88 0 1696064..1697347 - 427 196156389 - MADE_01580 - signal peptide prediction 1565 43.46 0 1697534..1698382 + 282 196156390 - MADE_01581 - SPFH domain/Band 7 family protein 1566 46.45 0 1698390..1698671 + 93 196156391 - MADE_01582 - hypothetical protein 1567 41.84 0 1698776..1700209 - 477 196156392 - MADE_01583 - Response regulator containing a CheY-like receiver domain and a GGDEF domain 1568 44.53 0 1700384..1701196 - 270 196156393 - MADE_01584 - hypothetical protein 1569 47.37 0 1701310..1701708 - 132 196156394 - MADE_01585 - hypothetical protein 44.90 MEAN 3.40 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0