IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1250	 45.45	0	1352224..1352652	+	142	196156075	-	MADE_01256	-	methionine sulfoxide reductase B
1251	 44.72	0	1352815..1353675	-	286	196156076	-	MADE_01257	-	hypothetical protein
1252	 47.93	0	1353893..1355338	+	481	196156077	-	MADE_01258	-	glyceraldehyde-3-phosphate dehydrogenase
1253	 44.21	0	1355545..1356684	+	379	196156078	-	MADE_01259	-	predicted carboxypeptidase, Zn dependent
1254	 48.22	0	1356824..1358455	+	543	196156079	-	MADE_01260	-	Na(+)-linked D-alanine glycine permease
1255	 41.38	-1	1358515..1358688	-	57	196156080	-	MADE_01261	-	hypothetical protein
1256	 48.41	+1	1358917..1359042	+	41	196156081	-	MADE_01262	-	hypothetical protein
1257	 42.18	0	1359043..1359336	+	97	196156082	-	MADE_01263	-	hypothetical protein
1258	 46.82	0	1359326..1362232	+	968	196156083	-	MADE_01264	-	hypothetical protein
1259	 43.84	0	1362233..1362451	+	72	196156084	-	MADE_01265	-	putative orphan protein
1260	 44.10	0	1362518..1362712	-	64	196156085	-	MADE_01266	-	hypothetical protein
1261	 43.50	0	1362751..1362927	-	58	196156086	-	MADE_01267	-	hypothetical protein
1262	 46.48	0	1363184..1363837	+	217	196156087	-	MADE_01268	-	hypothetical protein
1263	 43.23	0	1363873..1364448	-	191	196156088	-	MADE_01269	-	hypothetical protein
1264	 45.30	0	1364475..1364708	-	77	196156089	-	MADE_01270	-	hypothetical protein
1265	 42.50	0	1364792..1365304	-	170	196156090	-	MADE_01271	-	hypothetical protein
1266	 46.67	0	1365308..1365637	-	109	196156091	-	MADE_01272	-	hypothetical protein
1267	 44.52	0	1365826..1367934	-	702	196156092	-	MADE_01273	-	putative two-component sensor histidine kinase and response regulator hybrid
1268	 44.59	0	1367947..1368399	-	150	196156093	-	MADE_01274	-	putative two-component response regulator
1269	 42.00	0	1368389..1369900	-	503	196156094	-	MADE_01275	-	putative two-component sensor histidine kinase
1270	 44.89	0	1369905..1370129	-	74	196156095	-	MADE_01276	-	putative orphan protein
1271	 44.37	0	1370149..1371480	-	443	196156096	-	MADE_01277	-	putative sigma-54 interacting response regulator protein
1272	 49.40	+1	1371995..1372573	+	192	196156097	-	MADE_01278	-	probable exopolysaccharide synthesis protein
1273	 45.35	0	1372596..1373519	-	307	196156098	-	MADE_01279	-	putative transcriptional regulator with periplasmic binding protein domain (LysR family)
1274	 45.48	0	1373571..1373924	-	117	196156099	-	MADE_01280	-	hypothetical protein
1275	 43.18	0	1374170..1374433	+	87	196156100	-	MADE_01281	-	transcriptional regulator, ArsR family protein
1276	 44.27	0	1374520..1375269	-	249	196156101	-	MADE_01282	-	hypothetical protein
1277	 47.92	0	1375465..1376712	-	415	196156102	-	MADE_01283	-	transposase
1278	 44.94	0	1376736..1377071	-	111	196156103	-	MADE_01284	-	Transposase and inactivated derivative
1279	 47.72	0	1377071..1377355	-	94	196156104	-	MADE_01285	-	hypothetical protein
1280	 39.71	-1	1377394..1378428	-	344	196156105	-	MADE_01286	-	putative lipopolysaccharide modification acyltransferase
1281	 51.13	+1	1378476..1379885	-	469	196156106	-	MADE_01287	-	hypothetical transposase
1282	 39.34	-1	1380310..1381857	+	515	196156107	-	MADE_01288	-	hypothetical protein
1283	 38.44	-1	1381915..1382502	+	195	196156108	-	MADE_01289	-	glycosyl transferase family protein
1284	 37.11	-2	1382561..1382719	+	52	196156109	-	MADE_01290	-	glycosyl transferase
1285	 34.11	-2	1382961..1383089	-	42	196156110	-	MADE_01291	-	hypothetical protein
1286	 32.24	-2	1383124..1383306	+	60	196156111	-	MADE_01292	-	hypothetical protein
1287	 38.99	-1	1383296..1384903	+	535	196156112	-	MADE_01293	-	hypothetical protein
1288	 37.84	-2	1384998..1386239	+	413	196156113	-	MADE_01294	-	hypothetical protein
1289	 39.29	-1	1386425..1387582	+	385	196156114	-	MADE_01295	-	secreted polysaccharide polymerase
1290	 39.53	-1	1387744..1388808	+	354	196156115	-	MADE_01296	-	glycosyltransferase
1291	 41.25	-1	1388805..1390256	+	483	196156116	-	MADE_01297	-	Polysaccharide biosynthesis protein
1292	 40.52	-1	1390259..1391344	+	361	196156117	-	MADE_01298	-	predicted glycosyltransferase
1293	 39.18	-1	1391313..1392440	-	375	196156118	-	MADE_01299	-	putative glycosyltransferase
1294	 36.78	-2	1392448..1393752	-	434	196156119	-	MADE_01300	-	hypothetical protein
1295	 37.79	-2	1393752..1394783	-	343	196156120	-	MADE_01301	-	hypothetical protein
1296	 39.91	-1	1394780..1395859	-	359	196156121	-	MADE_01302	-	glycosyl transferase, group 1 family protein
1297	 42.55	0	1395883..1397781	-	632	196156122	-	MADE_01303	-	Asparagine synthase, glutamine-hydrolyzing
1298	 43.20	0	1397794..1398867	-	357	196156123	-	MADE_01304	-	hypothetical protein
1299	 43.31	0	1398882..1399883	-	333	196156124	-	MADE_01305	-	WalW protein
1300	 43.05	0	1399887..1400987	-	366	196156125	-	MADE_01306	-	Glycosyl transferase, group 1
1301	 43.02	0	1400993..1401973	-	326	196156126	-	MADE_01307	-	dolichyl-phosphate mannose synthase related protein
1302	 41.56	0	1401955..1404459	-	834	196156127	-	MADE_01308	-	hypothetical protein
1303	 37.13	-2	1404456..1405562	-	368	196156128	-	MADE_01309	-	hypothetical protein
1304	 38.96	-1	1405908..1408589	+	893	196156129	-	MADE_01310	-	TPR domain protein
1305	 43.13	0	1408730..1409566	+	278	196156130	-	MADE_01311	-	hypothetical protein
1306	 43.42	0	1410072..1410299	+	75	196156131	-	MADE_01312	-	putative orphan protein; putative transposase (IS66 family element,Orf2-like)
1307	 46.44	0	1410376..1410642	+	88	196156132	-	MADE_01313	-	putative transposase (IS66)
1308	 38.19	-1	1410809..1411672	-	287	196156133	-	MADE_01314	-	hypothetical protein
1309	 38.93	-1	1411729..1412478	-	249	196156134	-	MADE_01315	-	hypothetical protein
1310	 46.14	0	1412833..1413675	+	280	196156135	-	MADE_01316	-	hypothetical protein
1311	 36.81	-2	1413798..1413941	+	47	196156136	-	MADE_01317	-	hypothetical protein
1312	 40.20	-1	1414178..1414789	+	203	196156137	-	MADE_01318	-	HPr kinase
1313	 41.16	-1	1414786..1415871	+	361	196156138	-	MADE_01319	-	hypothetical protein
1314	 42.98	0	1415865..1417502	-	545	196156139	-	MADE_01320	-	FAD-binding protein
1315	 44.15	0	1417564..1418580	+	338	196156140	-	MADE_01321	-	capsular polysaccharide biosynthesis protein I
1316	 46.13	0	1418614..1419504	-	296	196156141	-	MADE_01322	-	Patatin
1317	 37.72	-2	1419531..1419644	+	37	196156142	-	MADE_01323	-	hypothetical protein
1318	 47.54	0	1419810..1422005	-	731	196156143	-	MADE_01324	-	malate synthase
1319	 47.51	0	1422104..1423048	-	314	196156144	-	MADE_01325	-	transcriptional regulator, LysR family protein
1320	 46.99	0	1423331..1424926	-	531	196156145	-	MADE_01326	-	isocitrate lyase
1321	 42.60	0	1425286..1426245	+	319	196156146	-	MADE_01327	-	chemotaxis protein CheV
1322	 45.13	0	1426470..1427936	+	488	196156147	-	MADE_01328	-	alkaline phosphatase
1323	 46.25	0	1428085..1429005	+	306	196156148	-	MADE_01329	-	glutaminase
1324	 45.60	0	1429054..1430406	-	450	196156149	-	MADE_01330	-	predicted secreted hydrolase
1325	 46.92	0	1430403..1433192	-	929	196156150	-	MADE_01331	-	hypothetical protein
1326	 45.74	0	1433248..1433940	-	230	196156151	-	MADE_01332	-	ABC transporter, nucleotide binding/ATPase protein
1327	 44.30	0	1434117..1434818	-	233	196156152	-	MADE_01333	-	Dihydroorotate dehydrogenase 2
1328	 47.59	0	1434865..1435404	-	179	196156153	-	MADE_01334	-	Rhomboid-like protein
1329	 47.15	0	1435425..1436582	-	385	196156154	-	MADE_01335	-	putative glutathionylspermidine synthase
1330	 49.03	+1	1436594..1437262	-	222	196156155	-	MADE_01336	-	predicted integral membrane protein
1331	 44.84	0	1437273..1437689	-	138	196156156	-	MADE_01337	-	hypothetical protein
1332	 43.88	0	1437706..1438350	-	214	196156157	-	MADE_01338	-	hypothetical protein
1333	 46.31	0	1438363..1439418	-	351	196156158	-	MADE_01339	-	Kef-type K+ transport system, predicted NAD-binding component
1334	 45.67	0	1439566..1440246	-	226	196156159	-	MADE_01340	-	Phage shock protein A (IM30), suppresses sigma54-dependent transcription
1335	 43.08	0	1440270..1440659	-	129	196156160	-	MADE_01341	-	hypothetical protein
1336	 44.19	0	1440931..1441197	+	88	196156161	-	MADE_01342	-	GMP synthase, PP-ATPase domain/subunit i
1337	 39.47	-1	1441210..1441323	+	37	196156162	-	MADE_01343	-	hypothetical protein
1338	 45.27	0	1441609..1442655	+	348	196156163	-	MADE_01344	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1339	 47.73	0	1443149..1443787	+	212	196156164	-	MADE_01345	-	queuine tRNA-ribosyltransferase
1340	 41.89	0	1443812..1444150	+	112	196156165	-	MADE_01346	-	putative preprotein translocase IISP family, membrane subunit
1341	 46.50	0	1444251..1446050	+	599	196156166	-	MADE_01347	-	protein export protein SecD
1342	 47.03	0	1446061..1447002	+	313	196156167	-	MADE_01348	-	protein-export membrane protein SecF
1343	 40.79	-1	1447114..1447998	-	294	196156168	-	MADE_01349	-	regulatory protein
1344	 41.89	0	1448242..1449351	+	369	196156169	-	MADE_01350	-	hypothetical protein
1345	 46.22	0	1449544..1450311	-	255	196156170	-	MADE_01351	-	inositol-1-monophosphatase
1346	 47.58	0	1450712..1451497	+	261	196156171	-	MADE_01352	-	putative tRNA/rRNA methyltransferase (trmH family) protein
1347	 49.21	+1	1451503..1452327	+	274	196156172	-	MADE_01353	-	serine acetyltransferase
1348	 47.15	0	1452449..1453924	+	491	196156173	-	MADE_01354	-	putative aromatic-ring hydroxylase
1349	 48.77	+1	1454070..1454555	+	161	196156174	-	MADE_01355	-	transcriptional regulator, BadM/Rrf2 family
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.