IslandPathversion 1.0

IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.90 STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1054	 47.38	0	1122961..1123629	+	222	196155879	-	MADE_01060	-	Phosphoglycerate/bisphosphoglycerate mutase
1055	 47.25	0	1123641..1124876	+	411	196155880	-	MADE_01061	-	putative acyl-CoA dehydrogenase
1056	 46.08	0	1124879..1125937	+	352	196155881	-	MADE_01062	-	aminoglycoside phosphotransferase
1057	 46.97	0	1126012..1126986	+	324	196155882	-	MADE_01063	-	Zinc-containing alcohol dehydrogenase superfamily protein
1058	 41.07	-1	1127161..1127328	-	55	196155883	-	MADE_01064	-	hypothetical protein
1059	 43.07	0	1127597..1128130	-	177	196155884	-	MADE_01065	-	SEC-C motif domain protein
1060	 41.12	-1	1128251..1128661	-	136	196155885	-	MADE_01066	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1061	 44.36	0	1128966..1129364	+	132	196155886	-	MADE_01067	-	membrane protein-like protein
1062	 43.95	0	1129389..1130066	-	225	196155887	-	MADE_01068	-	Ferric reductase-like transmembrane component
1063	 46.03	0	1130175..1131182	-	335	196155888	-	MADE_01069	-	oxidoreductase, molybdopterin binding
1064	 47.77	0	1131383..1132726	-	447	196155889	-	MADE_01070	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1065	 42.00	0	1132806..1133405	-	199	196155890	-	MADE_01071	-	metal dependent phosphohydrolase
1066	 45.13	0	1133407..1134627	-	406	196155891	-	MADE_01072	-	aminotransferase, class I
1067	 43.65	0	1134900..1135694	+	264	196155892	-	MADE_01073	-	putative cytochrome c oxidase, subunit I
1068	 46.36	0	1136094..1136423	+	109	196155893	-	MADE_01074	-	hypothetical protein
1069	 45.47	0	1136528..1139608	-	1026	196155894	-	MADE_01075	-	AcrB/AcrD/AcrF family protein
1070	 46.69	0	1139605..1142973	-	1122	196155895	-	MADE_01076	-	AcrB/AcrD/AcrF family protein
1071	 45.00	0	1142998..1144128	-	376	196155896	-	MADE_01077	-	HlyD family secretion protein
1072	 42.99	0	1144342..1144776	-	144	196155897	-	MADE_01078	-	putative inner membrane protein
1073	 44.88	0	1144808..1145725	-	305	196155898	-	MADE_01079	-	hypothetical protein
1074	 47.70	0	1145758..1146495	+	245	196155899	-	MADE_01080	-	LamB/YcsF family protein
1075	 50.07	+1	1146552..1147286	+	244	196155900	-	MADE_01081	-	Allophanate hydrolase, subunit 1
1076	 48.58	+1	1147240..1148223	+	327	196155901	-	MADE_01082	-	putative carboxylase
1077	 44.41	0	1148220..1149086	+	288	196155902	-	MADE_01083	-	D-alanine transaminase
1078	 39.86	-1	1149142..1149570	-	142	196155903	-	MADE_01084	-	ferric uptake regulator
1079	 44.43	0	1149874..1151892	+	672	196155904	-	MADE_01085	-	methyl-accepting chemotaxis protein
1080	 45.52	0	1152028..1152552	-	174	196155905	-	MADE_01086	-	flavodoxin
1081	 41.55	0	1152579..1152797	-	72	196155906	-	MADE_01087	-	hypothetical protein
1082	 42.86	0	1152922..1153614	-	230	196155907	-	MADE_01088	-	hypothetical esterase/lipase ybfF
1083	 46.25	0	1153749..1153988	+	79	196155908	-	MADE_01089	-	hypothetical protein
1084	 39.52	-1	1159935..1160936	+	333	196155909	-	MADE_01090	-	sensory box/GGDEF family protein
1085	 40.98	-1	1160983..1161348	-	121	196155910	-	MADE_01091	-	hypothetical protein
1086	 42.88	0	1161351..1164629	-	1092	196155911	-	MADE_01092	-	transcriptional regulator
1087	 46.87	0	1164834..1165328	+	164	196155912	-	MADE_01093	-	hypothetical protein
1088	 41.67	0	1165480..1166331	+	283	196155913	-	MADE_01094	-	hypothetical protein
1089	 40.92	-1	1166328..1167092	+	254	196155914	-	MADE_01095	-	hypothetical protein
1090	 42.09	0	1167392..1167928	+	178	196155915	-	MADE_01096	-	adenine phosphoribosyltransferase
1091	 47.05	0	1167972..1170764	+	930	196155916	-	MADE_01097	-	DNA polymerase III subunits gamma and tau
1092	 48.18	0	1170803..1171132	+	109	196155917	-	MADE_01098	-	hypothetical protein
1093	 42.20	0	1171624..1174092	+	822	196155918	-	MADE_01099	-	bacteriophytochrome protein
1094	 41.43	-1	1174097..1176493	+	798	196155919	-	MADE_01100	-	sensory box/GGDEF family protein
1095	 41.03	-1	1176465..1176581	+	38	196155920	-	MADE_01101	-	hypothetical protein
1096	 41.88	0	1176708..1177655	+	315	196155921	-	MADE_01102	-	hypothetical protein
1097	 50.10	+1	1177742..1178260	+	172	196155922	-	MADE_01103	-	recombination protein RecR
1098	 45.76	0	1178473..1180395	+	640	196155923	-	MADE_01104	-	heat shock protein 90
1099	 47.60	0	1180744..1181388	+	214	196155924	-	MADE_01105	-	adenylate kinase(ATP-AMP transphosphorylase)
1100	 48.23	0	1181538..1181933	+	131	196155925	-	MADE_01106	-	uncharacterized relative of glutathione S-transferase
1101	 47.94	0	1182235..1184850	-	871	196155926	-	MADE_01107	-	TonB-dependent receptor
1102	 45.79	0	1185581..1188445	+	954	196155927	-	MADE_01108	-	peptidase, M16 family protein
1103	 45.61	0	1188536..1190767	-	743	196155928	-	MADE_01109	-	methyl-accepting chemotaxis protein
1104	 43.21	0	1190984..1191844	+	286	196155929	-	MADE_01110	-	putative transporter (formate/nitrite transporter family) protein
1105	 46.93	0	1191949..1192566	-	205	196155930	-	MADE_01111	-	phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase
1106	 48.95	+1	1192563..1193375	-	270	196155931	-	MADE_01112	-	imidazole glycerol phosphate synthase subunit HisF
1107	 49.32	+1	1193357..1194094	-	245	196155932	-	MADE_01113	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1108	 46.19	0	1194094..1194723	-	209	196155933	-	MADE_01114	-	imidazole glycerol phosphate synthase subunit HisH
1109	 47.43	0	1194723..1195793	-	356	196155934	-	MADE_01115	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
1110	 45.19	0	1195790..1196869	-	359	196155935	-	MADE_01116	-	histidinol-phosphate aminotransferase
1111	 50.19	+1	1196869..1198173	-	434	196155936	-	MADE_01117	-	Histidinol dehydrogenase
1112	 47.62	0	1198187..1199089	-	300	196155937	-	MADE_01118	-	ATP phosphoribosyltransferase
1113	 38.62	-1	1199491..1199736	+	81	196155938	-	MADE_01119	-	hypothetical protein
1114	 46.54	0	1199934..1201652	+	572	196155939	-	MADE_01120	-	iron-regulated outer membrane virulence protein
1115	 45.20	0	1201649..1202221	-	190	196155940	-	MADE_01121	-	putative lipoprotein
1116	 42.28	0	1202386..1202631	-	81	196155941	-	MADE_01122	-	Na(+)-translocating NADH-quinone reductase subunit B
1117	 42.67	0	1202780..1203325	-	181	196155942	-	MADE_01123	-	hypothetical protein
1118	 45.54	0	1203414..1204322	+	302	196155943	-	MADE_01124	-	hypothetical protein
1119	 46.90	0	1204407..1205711	+	434	196155944	-	MADE_01125	-	alpha-amylase, putative
1120	 44.75	0	1205830..1206048	+	72	196155945	-	MADE_01126	-	putative orphan protein
1121	 42.18	0	1206288..1206581	+	97	196155946	-	MADE_01127	-	putative orphan protein
1122	 50.91	+1	1206696..1207298	-	200	196155947	-	MADE_01128	-	hypothetical protein
1123	 43.69	0	1207443..1208108	-	221	196155948	-	MADE_01129	-	putative calcium binding protein
1124	 44.74	0	1208311..1208424	-	37	196155949	-	MADE_01130	-	hypothetical protein
1125	 48.85	+1	1208519..1210438	+	639	196155950	-	MADE_01131	-	ATP-dependent helicase
1126	 49.51	+1	1210517..1211227	+	236	196155951	-	MADE_01132	-	peptidase M22, glycoprotease
1127	 42.52	0	1211338..1211631	+	97	196155952	-	MADE_01133	-	hypothetical protein
1128	 32.52	-2	1211847..1211969	+	40	196155953	-	MADE_01134	-	hypothetical protein
1129	 46.42	0	1212017..1212673	+	218	196155954	-	MADE_01135	-	Starvation-inducible outer membrane lipoprotein
1130	 43.21	0	1212770..1213609	+	279	196155955	-	MADE_01136	-	hydrolase, alpha/beta fold family protein
1131	 45.61	0	1213731..1215383	+	550	196155956	-	MADE_01137	-	acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase), acyl-adenylate activating enzyme
1132	 46.55	0	1215445..1216602	+	385	196155957	-	MADE_01138	-	ribonuclease D
1133	 41.41	-1	1216661..1216957	+	98	196155958	-	MADE_01139	-	hypothetical protein
1134	 35.51	-2	1216932..1217069	-	45	196155959	-	MADE_01140	-	hypothetical protein
1135	 45.58	0	1217056..1218027	+	323	196155960	-	MADE_01141	-	putative transglycosylase
1136	 45.59	0	1218030..1218698	+	222	196155961	-	MADE_01142	-	putative fumarylacetoacetate hydrolase family protein
1137	 44.04	0	1218695..1219189	+	164	196155962	-	MADE_01143	-	hypothetical protein
1138	 46.00	0	1219331..1220617	+	428	196155963	-	MADE_01144	-	hypothetical protein
1139	 47.57	0	1220649..1221203	-	184	196155964	-	MADE_01145	-	probable ribosomal-protein-serine acetyltransferase
1140	 46.02	0	1221200..1221727	-	175	196155965	-	MADE_01146	-	disulfide bond formation protein B (Disulfide oxidoreductase)
1141	 45.94	0	1221731..1223293	-	520	196155966	-	MADE_01147	-	Na+/H+ antiporter
1142	 43.74	0	1223737..1224447	+	236	196155967	-	MADE_01148	-	fatty acid metabolism regulator
1143	 35.04	-2	1224760..1224876	-	38	196155968	-	MADE_01149	-	hypothetical protein
1144	 43.99	0	1224855..1227032	+	725	196155969	-	MADE_01150	-	Protease II
1145	 46.11	0	1227204..1227563	+	119	196155970	-	MADE_01151	-	hypothetical protein
1146	 45.56	0	1227637..1227816	-	59	196155971	-	MADE_01152	-	hypothetical protein
1147	 47.69	0	1227901..1228506	-	201	196155972	-	MADE_01153	-	hypothetical protein
1148	 48.97	+1	1228460..1229041	-	193	196155973	-	MADE_01154	-	hypothetical protein
1149	 41.91	0	1229423..1230868	-	481	196155974	-	MADE_01155	-	hypothetical protein
1150	 44.56	0	1230947..1232407	-	486	196155975	-	MADE_01156	-	predicted esterase of the alpha-beta hydrolase superfamily protein
1151	 44.67	0	1232812..1234020	+	402	196155976	-	MADE_01157	-	hypothetical protein
1152	 43.24	0	1234051..1234716	+	221	196155977	-	MADE_01158	-	transcriptional regulator PhaD
1153	 45.76	0	1234727..1236166	+	479	196155978	-	MADE_01159	-	hypothetical protein
44.90	MEAN

3.40	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.