IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
842	 55.26	-1	946765..947562	-	265	17937562	-	Atu3857	-	hypothetical protein
843	 50.13	-2	947608..947988	+	126	159185920	-	Atu3858	-	hypothetical protein
844	 59.22	0	948602..950845	-	747	15891101	-	Atu3860	-	hypothetical protein
845	 60.77	0	951014..951403	-	129	159185921	-	Atu3861	-	acyl-CoA hydrolase
846	 58.12	0	951538..951771	+	77	15891099	-	Atu3862	-	hypothetical protein
847	 60.32	0	951813..953294	-	493	159185922	exsE	Atu3863	-	ABC transporter, nucleotide binding/ATPase protein
848	 57.51	0	953425..953697	-	90	17937568	-	Atu3864	-	hypothetical protein
849	 61.41	0	953911..957237	+	1108	159185923	-	Atu3865	-	hypothetical protein
850	 60.72	0	957239..959644	+	801	15891096	-	Atu3866	-	hypothetical protein
851	 60.41	0	959649..960527	+	292	159185924	-	Atu3867	-	hypothetical protein
852	 55.45	-1	960696..961934	+	412	15891094	-	Atu3868	-	hypothetical protein
853	 58.84	0	962082..963704	+	540	159185925	-	Atu3869	-	ABC transporter, nucleotide binding/ATPase protein
854	 59.37	0	963765..964778	+	337	15891092	ldhA	Atu3870	-	D-lactate dehydrogenase
855	 59.69	0	964886..966031	+	381	15891091	lldA	Atu3871	-	L-lactate dehydrogenase
856	 59.13	0	966061..966405	-	114	159185926	-	Atu3872	-	hypothetical protein
857	 58.31	0	966601..967581	+	326	159185927	-	Atu3873	-	hypothetical protein
858	 62.88	+1	967837..969315	-	492	159185928	lyxK	Atu3874	-	L-xylulose kinase
859	 59.55	0	969329..970171	-	280	159185929	-	Atu3875	-	aldolase
860	 60.81	0	970174..971898	-	574	15891086	glpD	Atu3876	-	glycerol-3-phosphate dehydrogenase
861	 62.26	0	972021..973019	-	332	15891085	-	Atu3877	-	aldo-keto reductase
862	 62.71	0	973016..973951	-	311	159185930	-	Atu3878	-	transcriptional regulator
863	 60.18	0	974032..975033	-	333	15891083	-	Atu3879	-	ABC transporter, membrane spanning protein (sugar)
864	 60.03	0	975046..976566	-	506	15891082	-	Atu3880	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
865	 56.61	0	976639..977652	-	337	159185931	-	Atu3881	-	ABC transporter, substrate binding protein (sugar)
866	 54.82	-1	978116..978478	-	120	159185932	-	Atu3883	-	chemotaxis response regulator
867	 58.53	0	978660..979544	+	294	15891079	-	Atu3884	-	hypothetical protein
868	 59.85	0	979862..980638	+	258	159185933	-	Atu3885	-	inositol monophosphatase family protein
869	 61.57	0	980660..981601	-	313	15891077	pldB	Atu3886	-	lysophospholipase
870	 58.80	0	981981..982463	+	160	15891075	hspL	Atu3887	-	small heat shock protein
871	 59.12	0	982526..983545	-	339	159185934	-	Atu3888	-	hypothetical protein
872	 61.67	0	983644..984504	+	286	15891073	-	Atu3889	-	LysR family transcriptional regulator
873	 61.40	0	984511..986010	-	499	159185935	glpK	Atu3890	-	glycerol kinase
874	 57.78	0	986083..987804	-	573	15891071	-	Atu3891	-	hypothetical protein
875	 60.88	0	987992..988285	-	97	159185936	-	Atu3892	-	hypothetical protein
876	 58.14	0	988288..989202	-	304	15891069	-	Atu3893	-	ABC transporter, membrane spanning protein (sugarl)
877	 57.32	0	989206..990072	-	288	15891068	-	Atu3894	-	ABC transporter, membrane spanning protein (sugar)
878	 60.97	0	990075..991145	-	356	15891067	-	Atu3895	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
879	 59.85	0	991160..992230	-	356	15891066	-	Atu3896	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
880	 59.71	0	992268..993791	-	507	15891065	glpD	Atu3897	-	glycerol-3-phosphate dehydrogenase
881	 57.88	0	993899..994672	-	257	15891064	glpR	Atu3898	-	DeoR family transcriptional regulator
882	 61.76	0	994814..996241	-	475	159185937	cysG	Atu3899	-	siroheme synthase
883	 62.97	+1	996252..998900	-	882	159185938	nasA	Atu3900	-	nitrate reductase large subunit
884	 59.52	0	999115..999450	-	111	159185939	nirD	Atu3901	-	nitrite reductase small subunit
885	 60.21	0	999456..1001903	-	815	159185940	nirB	Atu3902	-	nitrite reductase large subunit
886	 59.77	0	1001909..1002706	-	265	15891059	nrtC	Atu3903	-	ABC transporter, nucleotide binding/ATPase protein (nitrate)
887	 61.41	0	1002720..1003613	-	297	159185941	nrtB	Atu3904	-	ABC transporter, membrane spanning protein (nitrate)
888	 60.02	0	1003727..1005019	-	430	159185942	ntrA	Atu3905	-	ABC transporter, substrate binding protein (nitrate)
889	 61.57	0	1005400..1006695	-	431	15891056	nrtC	Atu3906	-	ABC transporter, nucleotide binding/ATPase protein (nitrate)
890	 59.01	0	1006731..1007318	-	195	159185943	nasT	Atu3907	-	two component response regulator
891	 59.01	0	1007420..1008085	-	221	159185944	-	Atu3908	-	GntR family transcriptional regulator
892	 61.19	0	1008352..1009593	+	413	159185945	-	Atu3909	-	hypothetical protein
893	 62.89	+1	1009717..1010484	+	255	15891052	-	Atu3910	-	hypothetical protein
894	 62.10	0	1010496..1011305	+	269	15891051	-	Atu3911	-	hypothetical protein
895	 62.26	0	1011313..1012923	+	536	159185946	-	Atu3912	-	hypothetical protein
896	 61.06	0	1012920..1014650	+	576	15891049	-	Atu3913	-	biotin carboxylase
897	 57.66	0	1014762..1016249	+	495	159185947	amyA	Atu3914	-	cytoplasmic alpha-amylase
898	 61.18	0	1016266..1016721	-	151	159185948	soxR	Atu3915	-	MerR family transcriptional regulator
899	 58.08	0	1016911..1019019	-	702	159185949	bfrA	Atu3916	-	exogenous ferric siderophore receptor
900	 61.09	0	1019167..1020636	+	489	159185950	-	Atu3917	-	hypothetical protein
901	 58.25	0	1020642..1021841	-	399	15891044	-	Atu3918	-	hypothetical protein
902	 56.84	0	1021897..1022181	-	94	159185951	-	Atu3919	-	hypothetical protein
903	 55.17	-1	1022278..1022538	+	86	159185952	-	Atu3920	-	hypothetical protein
904	 45.28	-2	1022584..1022742	+	52	17937624	-	Atu3921	-	hypothetical protein
905	 54.07	-1	1022888..1024165	-	425	159185953	repC	Atu3922	-	replication protein C
906	 58.09	0	1024351..1025364	-	337	15891040	repB	Atu3923	-	replication protein B
907	 57.86	0	1025361..1026575	-	404	159185954	repA	Atu3924	-	replication protein A
908	 57.16	0	1027010..1028398	+	462	15891038	-	Atu3925	-	hypothetical protein
909	 58.08	0	1028765..1029160	+	131	159185955	-	Atu3926	-	translation initiation inhibitor
910	 59.14	0	1029193..1030281	+	362	15891036	-	Atu3927	-	hypothetical protein
911	 59.84	0	1030354..1031832	+	492	159185956	-	Atu3928	-	hypothetical protein
912	 55.50	-1	1031845..1032417	-	190	15891034	-	Atu3929	-	hypothetical protein
913	 57.76	0	1032456..1033466	-	336	159185957	-	Atu3930	-	hypothetical protein
914	 63.08	+1	1033662..1035335	-	557	159185958	hutU	Atu3931	-	urocanate hydratase
915	 57.55	0	1035350..1036150	-	266	159185959	-	Atu3932	-	hypothetical protein
916	 63.24	+1	1036224..1037768	-	514	15891030	hutH	Atu3933	-	histidine ammonia-lyase
917	 61.59	0	1037765..1039024	-	419	159185960	hutI	Atu3934	-	imidazolonepropionase
918	 59.99	0	1039138..1040484	+	448	159185961	-	Atu3935	-	N-formimino-L-glutamate deiminase
919	 59.97	0	1040507..1041253	+	248	159185962	-	Atu3936	-	GntR family transcriptional regulator
920	 48.97	-2	1044310..1044699	-	129	159185963	-	Atu3940	-	hypothetical protein
921	 52.71	-2	1047307..1047564	+	85	15891024	-	Atu3942	-	hypothetical protein
922	 59.27	0	1048988..1050298	-	436	159185964	ordL	Atu3947	-	oxidoreductase
923	 60.38	0	1050598..1051743	+	381	159185965	-	Atu3948	-	hypothetical protein
924	 60.32	0	1051754..1052698	+	314	159185966	arcB	Atu3949	-	ornithine cyclodeaminase
925	 57.89	0	1052716..1054173	+	485	159185967	-	Atu3950	-	aldehyde dehydrogenase
926	 59.56	0	1054176..1055090	-	304	15891018	-	Atu3951	-	LysR family transcriptional regulator
927	 61.10	0	1055276..1056604	+	442	15891017	-	Atu3952	-	oxidoreductase
928	 60.86	0	1056739..1057737	-	332	15891016	-	Atu3953	-	hypothetical protein
929	 60.92	0	1057765..1058616	-	283	15891015	-	Atu3954	-	ABC transporter, membrane spanning protein
930	 61.25	0	1058613..1059461	-	282	15891014	-	Atu3955	-	ABC transporter, membrane spanning protein
931	 59.52	0	1059475..1060566	-	363	159185968	-	Atu3956	-	ABC transporter, nucleotide binding/ATPase protein
932	 56.09	-1	1060653..1061531	-	292	159185969	-	Atu3957	-	ABC transporter, substrate binding protein (glycine-betaine)
933	 60.73	0	1061583..1062929	-	448	159185970	-	Atu3958	-	oxidoreductase
934	 60.47	0	1062926..1064443	-	505	159185971	dhaL	Atu3959	-	aldehyde dehydrogenase
935	 59.10	0	1064436..1065347	-	303	15891009	dapA	Atu3960	-	dihydrodipicolinate synthase
936	 57.87	0	1065344..1066093	-	249	159185972	-	Atu3961	-	GntR family transcriptional regulator
937	 60.00	0	1066585..1067394	-	269	159185973	-	Atu3962	-	calcium-binding protein, regucalcin
938	 61.95	0	1067535..1068233	-	232	159185974	-	Atu3963	-	GntR family transcriptional regulator
939	 60.45	0	1068391..1069404	+	337	159185975	-	Atu3964	-	dehydrogenase
940	 60.28	0	1069397..1070413	+	338	15891004	-	Atu3965	-	oxidoreductase
941	 62.29	0	1070410..1071483	+	357	15891003	-	Atu3966	-	oxidoreductase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.