IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
781	 61.69	0	885929..887374	+	481	15891157	aspA	Atu3793	-	aspartate ammonia-lyase
782	 64.30	+1	887343..888059	-	238	159185900	-	Atu3794	-	FadR family transcriptional regulator
783	 59.64	0	888269..891340	-	1023	15891155	-	Atu3795	-	AcrB/AcrD/AcrF family protein
784	 62.62	0	891337..892422	-	361	15891154	-	Atu3796	-	efflux protein
785	 61.65	0	892422..893498	-	358	15891153	-	Atu3797	-	HlyD family secretion protein
786	 57.24	0	893804..894418	+	204	159185901	-	Atu3798	-	TetR family transcriptional regulator
787	 56.20	0	894454..895437	-	327	15891151	hutC	Atu3799	-	GntR family transcriptional regulator
788	 59.83	0	895721..896758	+	345	159185902	proX	Atu3800	-	ABC transporter, substrate binding protein (proline/glycine betaine)
789	 59.56	0	896854..897711	+	285	159185903	proW	Atu3801	-	ABC transporter, membrane spanning protein (proline/glycine betaine)
790	 60.19	0	897704..898537	+	277	15891148	proV	Atu3802	-	ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine)
791	 64.40	+1	898530..900032	+	500	15891147	hutH	Atu3803	-	histidine ammonia-lyase
792	 63.28	+1	900299..901507	+	402	15891146	-	Atu3804	-	permease
793	 60.76	0	901747..902694	+	315	15891145	myg1	Atu3805	-	hypothetical protein
794	 58.96	0	902788..904071	-	427	15891144	mdeA	Atu3806	-	methionine gamma-lyase
795	 56.21	0	904195..904653	+	152	15891143	lrp	Atu3807	-	AsnC family transcriptional regulator
796	 62.69	0	904721..905626	-	301	159185904	-	Atu3808	-	LysR family transcriptional regulator
797	 57.79	0	905751..906617	+	288	159185905	-	Atu3809	-	putative oxidoreductase
798	 62.53	0	906727..907620	-	297	15891140	-	Atu3810	-	LysR family transcriptional regulator
799	 58.91	0	907774..908418	+	214	15891139	-	Atu3811	-	hydrolase
800	 56.86	0	908601..909008	-	135	15891138	-	Atu3812	-	hypothetical protein
801	 58.63	0	909271..910017	+	248	15891137	fabG	Atu3813	-	3-oxoacyl-(acyl-carrier protein) reductase
802	 56.97	0	910028..910357	+	109	159185906	-	Atu3814	-	hypothetical protein
803	 60.45	0	910387..911046	-	219	159185907	-	Atu3815	-	GntR family transcriptional regulator
804	 62.37	0	911329..912375	-	348	159185908	fdh	Atu3816	-	D-threo-aldose 1-dehydrogenase
805	 59.19	0	912674..914185	+	503	15891133	-	Atu3817	-	dehydratase
806	 61.60	0	914315..915814	+	499	159185909	rbsA	Atu3818	-	ABC transporter, nucleotide binding/ATPase protein (ribose)
807	 64.36	+1	915811..916809	+	332	15891131	rbsC	Atu3819	-	ABC transporter, membrane spanning protein (ribose)
808	 62.22	0	916806..917771	+	321	15891130	rbsC	Atu3820	-	ABC transporter, membrane spanning protein (ribose)
809	 59.14	0	917805..918734	+	309	159185910	rbsB	Atu3821	-	ABC transporter, substrate binding protein (ribose)
810	 54.94	-1	918863..919348	+	161	17937527	-	Atu3822	-	hypothetical protein
811	 53.06	-1	919370..920398	-	342	15891128	metE	Atu3823	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
812	 48.07	-2	920424..921407	-	327	15891127	-	Atu3824	-	hypothetical protein
813	 59.57	0	922011..922841	+	276	15891126	-	Atu3826	-	acyl-CoA hydrolase
814	 59.23	0	922844..923731	+	295	15891125	-	Atu3827	-	LysR family transcriptional regulator
815	 56.65	0	923782..924360	+	192	15891124	-	Atu3828	-	acetyltransferase
816	 61.50	0	924427..925278	-	283	15891123	-	Atu3829	-	LysR family transcriptional regulator
817	 61.58	0	925369..926625	+	418	15891122	-	Atu3830	-	MFS permease
818	 56.17	0	926945..928135	+	396	15891121	int	Atu3831	-	phage-related integrase
819	 47.73	-2	928343..929884	+	513	15891120	-	Atu3832	-	hypothetical protein
820	 49.63	-2	930048..930587	-	179	15891119	-	Atu3833	-	hypothetical protein
821	 49.86	-2	930600..931295	-	231	15891118	-	Atu3834	-	hypothetical protein
822	 46.31	-2	931282..932067	-	261	15891117	-	Atu3835	-	hypothetical protein
823	 52.85	-2	932358..932936	-	192	159185911	-	Atu3836	-	hypothetical protein
824	 54.12	-1	932981..933235	-	84	159185912	-	Atu3837	-	hypothetical protein
825	 56.55	0	933309..933743	-	144	17937543	-	Atu3838	-	hypothetical protein
826	 61.49	0	935740..936048	-	102	17937545	-	Atu3840	-	hypothetical protein
827	 53.04	-1	936047..936523	+	158	17937546	-	Atu3841	-	hypothetical protein
828	 47.38	-2	936504..937094	-	196	15891112	-	Atu3842	-	hypothetical protein
829	 48.82	-2	937437..938579	+	380	159185913	-	Atu3843	-	hypothetical protein
830	 46.20	-2	938631..939143	+	170	15891110	-	Atu3844	-	hypothetical protein
831	 61.23	0	939216..939896	-	226	15891109	-	Atu3845	-	hypothetical protein
832	 57.82	0	939917..940357	-	146	17937551	-	Atu3846	-	hypothetical protein
833	 58.81	0	940426..940947	-	173	159185914	-	Atu3847	-	hypothetical protein
834	 55.44	-1	941336..941629	+	97	159185915	-	Atu3848	-	hypothetical protein
835	 57.98	0	941783..942415	+	210	159185916	-	Atu3849	-	resolvase
836	 58.50	0	942412..942705	+	97	15891105	-	Atu3850	-	hypothetical protein
837	 59.08	0	943008..943310	-	100	159185917	-	Atu3851	-	hypothetical protein
838	 59.93	0	943321..943587	-	88	159185918	-	Atu3852	-	hypothetical protein
839	 53.67	-1	943741..943917	+	58	17937558	-	Atu3853	-	hypothetical protein
840	 58.76	0	944097..946196	-	699	159185919	-	Atu3854	-	hypothetical protein
841	 55.67	-1	946422..946721	+	99	17937561	-	Atu3856	-	hypothetical protein
842	 55.26	-1	946765..947562	-	265	17937562	-	Atu3857	-	hypothetical protein
843	 50.13	-2	947608..947988	+	126	159185920	-	Atu3858	-	hypothetical protein
844	 59.22	0	948602..950845	-	747	15891101	-	Atu3860	-	hypothetical protein
845	 60.77	0	951014..951403	-	129	159185921	-	Atu3861	-	acyl-CoA hydrolase
846	 58.12	0	951538..951771	+	77	15891099	-	Atu3862	-	hypothetical protein
847	 60.32	0	951813..953294	-	493	159185922	exsE	Atu3863	-	ABC transporter, nucleotide binding/ATPase protein
848	 57.51	0	953425..953697	-	90	17937568	-	Atu3864	-	hypothetical protein
849	 61.41	0	953911..957237	+	1108	159185923	-	Atu3865	-	hypothetical protein
850	 60.72	0	957239..959644	+	801	15891096	-	Atu3866	-	hypothetical protein
851	 60.41	0	959649..960527	+	292	159185924	-	Atu3867	-	hypothetical protein
852	 55.45	-1	960696..961934	+	412	15891094	-	Atu3868	-	hypothetical protein
853	 58.84	0	962082..963704	+	540	159185925	-	Atu3869	-	ABC transporter, nucleotide binding/ATPase protein
854	 59.37	0	963765..964778	+	337	15891092	ldhA	Atu3870	-	D-lactate dehydrogenase
855	 59.69	0	964886..966031	+	381	15891091	lldA	Atu3871	-	L-lactate dehydrogenase
856	 59.13	0	966061..966405	-	114	159185926	-	Atu3872	-	hypothetical protein
857	 58.31	0	966601..967581	+	326	159185927	-	Atu3873	-	hypothetical protein
858	 62.88	+1	967837..969315	-	492	159185928	lyxK	Atu3874	-	L-xylulose kinase
859	 59.55	0	969329..970171	-	280	159185929	-	Atu3875	-	aldolase
860	 60.81	0	970174..971898	-	574	15891086	glpD	Atu3876	-	glycerol-3-phosphate dehydrogenase
861	 62.26	0	972021..973019	-	332	15891085	-	Atu3877	-	aldo-keto reductase
862	 62.71	0	973016..973951	-	311	159185930	-	Atu3878	-	transcriptional regulator
863	 60.18	0	974032..975033	-	333	15891083	-	Atu3879	-	ABC transporter, membrane spanning protein (sugar)
864	 60.03	0	975046..976566	-	506	15891082	-	Atu3880	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
865	 56.61	0	976639..977652	-	337	159185931	-	Atu3881	-	ABC transporter, substrate binding protein (sugar)
866	 54.82	-1	978116..978478	-	120	159185932	-	Atu3883	-	chemotaxis response regulator
867	 58.53	0	978660..979544	+	294	15891079	-	Atu3884	-	hypothetical protein
868	 59.85	0	979862..980638	+	258	159185933	-	Atu3885	-	inositol monophosphatase family protein
869	 61.57	0	980660..981601	-	313	15891077	pldB	Atu3886	-	lysophospholipase
870	 58.80	0	981981..982463	+	160	15891075	hspL	Atu3887	-	small heat shock protein
871	 59.12	0	982526..983545	-	339	159185934	-	Atu3888	-	hypothetical protein
872	 61.67	0	983644..984504	+	286	15891073	-	Atu3889	-	LysR family transcriptional regulator
873	 61.40	0	984511..986010	-	499	159185935	glpK	Atu3890	-	glycerol kinase
874	 57.78	0	986083..987804	-	573	15891071	-	Atu3891	-	hypothetical protein
875	 60.88	0	987992..988285	-	97	159185936	-	Atu3892	-	hypothetical protein
876	 58.14	0	988288..989202	-	304	15891069	-	Atu3893	-	ABC transporter, membrane spanning protein (sugarl)
877	 57.32	0	989206..990072	-	288	15891068	-	Atu3894	-	ABC transporter, membrane spanning protein (sugar)
878	 60.97	0	990075..991145	-	356	15891067	-	Atu3895	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
879	 59.85	0	991160..992230	-	356	15891066	-	Atu3896	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
880	 59.71	0	992268..993791	-	507	15891065	glpD	Atu3897	-	glycerol-3-phosphate dehydrogenase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.