IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
682	 58.93	0	767474..768016	+	180	159185861	-	Atu3692	-	sigma factor
683	 60.19	0	768064..769035	+	323	15891252	fecR	Atu3693	-	two component sensor kinase
684	 63.88	+1	769161..771206	-	681	159185862	pbpC	Atu3694	-	penicillin binding protein
685	 61.04	0	771236..776692	-	1818	159185863	-	Atu3695	-	hypothetical protein
686	 53.97	-1	776811..776999	-	62	17937403	-	Atu3696	-	hypothetical protein
687	 60.80	0	777010..777657	-	215	159185864	lonD	Atu3697	-	ATP-dependent protease LA 2
688	 60.06	0	777750..778718	-	322	159185865	-	Atu3698	-	putative thioredoxin
689	 54.71	-1	778772..779281	-	169	15891247	-	Atu3699	-	hypothetical protein
690	 58.01	0	779833..780525	+	230	15891246	-	Atu3701	-	glutathione S-transferase
691	 62.99	+1	781025..782167	-	380	159185866	trmU	Atu3703	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
692	 57.77	0	782420..783610	-	396	159185867	-	Atu3704	-	hypothetical protein
693	 62.19	0	784049..784696	-	215	159185868	-	Atu3705	-	hypothetical protein
694	 58.90	0	785354..786949	-	531	15891242	serA	Atu3706	-	D-3-phosphoglycerate dehydrogenase
695	 60.73	0	787033..788211	-	392	15891241	serC	Atu3707	-	phosphoserine aminotransferase
696	 57.09	0	788425..789270	-	281	159185869	-	Atu3708	-	outer surface protein
697	 59.94	0	789459..790811	-	450	159185870	mrsA	Atu3709	-	phosphoglucomutase/phosphomannomutase
698	 60.25	0	791000..792946	-	648	159185871	ftsH	Atu3710	-	metalloprotease
699	 59.91	0	793101..794432	-	443	15891237	mesJ	Atu3711	-	hypothetical protein
700	 60.81	0	794457..795446	-	329	159185872	-	Atu3712	-	hypothetical protein
701	 64.04	+1	795620..796153	-	177	15891235	palA	Atu3713	-	omp16 protein
702	 59.56	0	796364..797671	-	435	159185873	tolB	Atu3714	-	translocation protein TolB
703	 61.04	0	797692..798846	-	384	15891233	tolA	Atu3715	-	hypothetical protein
704	 61.66	0	798856..799314	-	152	15891232	tolR	Atu3716	-	tolR protein
705	 58.47	0	799373..800092	-	239	159185874	tolQ	Atu3717	-	tolQ protein
706	 58.96	0	800354..800794	-	146	15891230	-	Atu3718	-	hypothetical protein
707	 57.39	0	800919..801446	-	175	159185875	mutT	Atu3719	-	MutT/nudix family protein
708	 57.51	0	801446..802024	-	192	159185876	-	Atu3720	-	hypothetical protein
709	 53.42	-1	802060..802278	-	72	159185877	-	Atu3721	-	hypothetical protein
710	 62.44	0	802331..803371	-	346	15891226	ruvB	Atu3722	-	Holliday junction DNA helicase B
711	 60.19	0	803458..804075	-	205	15891225	ruvA	Atu3723	-	Holliday junction DNA helicase motor protein
712	 62.38	0	804103..804615	-	170	15891224	ruvC	Atu3724	-	Holliday junction resolvase
713	 61.26	0	804862..807171	+	769	159185878	-	Atu3725	-	methyl-accepting chemotaxis protein
714	 60.98	0	807318..808319	+	333	15891222	-	Atu3726	-	flavin dependant oxidoreductase
715	 56.89	0	808406..809152	-	248	15891221	-	Atu3727	-	hypothetical protein
716	 58.13	0	809350..809853	+	167	159185879	-	Atu3728	-	hypothetical protein
717	 59.48	0	809890..810543	-	217	159185880	-	Atu3729	-	hypothetical protein
718	 58.79	0	810848..811672	-	274	15891218	-	Atu3730	-	hypothetical protein
719	 62.93	+1	811772..812359	-	195	15891217	-	Atu3731	-	5-formyltetrahydrofolate cyclo-ligase
720	 61.66	0	812359..813636	-	425	15891216	-	Atu3732	-	hemolysin
721	 47.89	-2	813639..813851	-	70	17937438	-	Atu3733	-	hypothetical protein
722	 57.41	0	814088..814465	-	125	15891215	-	Atu8191	-	hypothetical protein
723	 58.24	0	814477..814749	-	90	159186374	-	Atu8192	-	hypothetical protein
724	 61.12	0	815073..817055	+	660	15891213	tktA	Atu3736	-	transketolase
725	 60.63	0	817118..818128	+	336	15891212	gapA	Atu3737	-	glyceraldehyde 3-phosphate dehydrogenase
726	 61.63	0	818445..820310	+	621	159185881	-	Atu3738	-	potassium/proton antiporter
727	 60.93	0	820378..821580	+	400	159185882	pgk	Atu3739	-	phosphoglycerate kinase
728	 59.36	0	821772..822797	+	341	15891209	-	Atu3740	-	fructose bisphosphate aldolase
729	 61.78	0	823147..824436	+	429	15891208	-	Atu3741	-	MFS permease
730	 57.56	0	825027..825542	+	171	159185883	-	Atu3742	-	hypothetical protein
731	 57.21	0	825696..825917	-	73	15891206	rpmE	Atu3743	-	50S ribosomal protein L31
732	 62.50	0	826179..827978	+	599	15891205	-	Atu3744	-	ABC transporter, nucleotide binding/ATPase protein
733	 62.65	0	828081..829724	-	547	15891204	-	Atu3745	-	putative FAD-binding dehydrogenase
734	 63.10	+1	829813..830598	-	261	159185884	motB	Atu3746	-	hypothetical protein
735	 61.78	0	830847..831869	-	340	159185885	-	Atu3747	-	hypothetical protein
736	 61.80	0	832071..832871	-	266	15891201	suhB	Atu3748	-	extragenic suppressor protein SuhB
737	 61.19	0	833035..834147	-	370	15891200	enhC	Atu3749	-	enhanced entry protein
738	 60.09	0	834144..834797	-	217	159185886	thiE	Atu3750	-	thiamine-phosphate pyrophosphorylase
739	 60.26	0	834902..835666	+	254	15891198	-	Atu3751	-	hypothetical protein
740	 52.54	-2	835769..835945	-	58	17937457	-	Atu3752	-	hypothetical protein
741	 56.37	0	836179..836382	+	67	15891197	-	Atu3753	-	hypothetical protein
742	 65.47	+1	836397..836897	+	166	15891196	purE	Atu3754	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
743	 61.00	0	836909..837985	+	358	159185887	purK	Atu3755	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
744	 53.17	-1	838132..838257	+	41	159186367	rpmJ	Atu8067	-	50S ribosomal protein L36
745	 60.23	0	838359..838979	+	206	15891193	-	Atu3757	-	hypothetical protein
746	 57.75	0	839048..839305	-	85	15891192	-	Atu3758	-	hypothetical protein
747	 54.90	-1	839454..839759	-	101	159185888	-	Atu3759	-	hypothetical protein
748	 58.94	0	839775..840563	-	262	15891190	-	Atu3760	-	hypothetical protein
749	 55.74	-1	840702..841241	+	179	15891189	-	Atu3761	-	hypothetical protein
750	 61.94	0	841241..842680	+	479	15891188	pykA	Atu3762	-	pyruvate kinase
751	 63.78	+1	842761..844524	-	587	159185889	-	Atu3763	-	hypothetical protein
752	 59.01	0	844842..846383	-	513	15891186	-	Atu3764	-	sigma 54 dependent transcriptional activator
753	 58.29	0	846553..848403	+	616	159185890	pepF	Atu3765	-	oligoendopeptidase F
754	 60.22	0	848503..849138	+	211	159185891	-	Atu3766	-	hypothetical protein
755	 58.53	0	849135..850043	-	302	15891183	-	Atu3767	-	GGDEF family protein
756	 59.27	0	850303..851748	+	481	15891182	-	Atu3768	-	homospermidine synthase
757	 60.53	0	851898..852272	+	124	15891181	-	Atu3769	-	outer membrane lipoprotein
758	 59.50	0	852488..854398	+	636	159185892	-	Atu3770	-	5'-nucleotidase
759	 57.00	0	854749..855783	+	344	159185893	hemH	Atu3771	-	ferrochelatase
760	 59.81	0	855841..856890	+	349	159185894	-	Atu3772	-	hypothetical protein
761	 61.94	0	856893..857357	+	154	15891177	-	Atu3773	-	hypothetical protein
762	 59.34	0	857431..858426	-	331	15891176	kpsF	Atu3774	-	capsule expression protein
763	 48.63	-2	858486..858851	-	121	15891175	-	Atu3775	-	hypothetical protein
764	 50.13	-2	858890..859264	+	124	17937481	-	Atu3776	-	hypothetical protein
765	 61.91	0	859271..860764	+	497	159185895	-	Atu3777	-	hypothetical protein
766	 55.18	-1	860825..861712	-	295	15891173	galU	Atu3778	-	UTP-glucose-1-phosphate uridylyltransferase
767	 58.80	0	861908..863128	+	406	15891172	mltB	Atu3779	-	lytic murein transglycosylase
768	 59.79	0	863192..864427	+	411	159185896	-	Atu3780	-	hypothetical protein
769	 61.33	0	864679..865353	+	224	159185897	-	Atu3781	-	two component response regulator
770	 56.78	0	865350..866705	+	451	15891169	-	Atu3782	-	two component sensor kinase
771	 61.37	0	866780..868234	-	484	15891168	gltD	Atu3783	-	glutamate synthase subunit beta
772	 60.87	0	868417..873162	-	1581	159185898	gltB	Atu3784	-	glutamate synthase large subunit
773	 60.21	0	873534..874586	+	350	15891166	ald	Atu3785	-	threonine aldolase
774	 59.28	0	874619..875308	-	229	15891165	kdpE	Atu3786	-	two component response regulator
775	 61.45	0	875369..878071	-	900	15891164	kdpD	Atu3787	-	two component sensor kinase
776	 62.43	0	878126..878692	-	188	15891163	kdpC	Atu3788	-	potassium-transporting ATPase C chain
777	 61.68	0	878705..880789	-	694	159185899	kdpB	Atu3789	-	potassium-transporting ATPase subunit B
778	 61.15	0	881007..882710	-	567	15891161	kdpA	Atu3790	-	potassium-transporting ATPase subunit A
779	 64.26	+1	883263..884216	-	317	15891159	ansA	Atu3791	-	L-asparaginase
780	 59.88	0	884213..885670	-	485	15891158	ansP	Atu3792	-	L-asparagine permease
781	 61.69	0	885929..887374	+	481	15891157	aspA	Atu3793	-	aspartate ammonia-lyase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.