IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
625	 58.76	0	684795..685919	-	374	159185834	-	Atu3633	-	hypothetical protein
626	 60.51	0	686107..687276	-	389	159185835	dacF	Atu3634	-	penicillin-binding protein dacf precursor
627	 60.40	0	687389..688552	+	387	159185836	-	Atu3635	-	amidohydrolase
628	 58.61	0	689286..689732	-	148	15891304	-	Atu3636	-	hypothetical protein
629	 52.81	-2	689890..690120	-	76	159185837	rpsU	Atu3637	-	30S ribosomal protein S21
630	 50.58	-2	690379..691503	-	374	15891302	-	Atu3638	-	hypothetical protein
631	 48.50	-2	691507..692238	-	243	159185838	-	Atu3639	-	hypothetical protein
632	 52.37	-2	692241..693821	-	526	15891300	-	Atu3640	-	hypothetical protein
633	 59.37	0	693818..694927	-	369	15891299	-	Atu3641	-	hypothetical protein
634	 61.50	0	694941..697205	-	754	159185839	vgrG	Atu3642	-	vgrG protein
635	 57.59	0	697335..698270	+	311	15891297	-	Atu3643	-	hypothetical protein
636	 46.49	-2	698498..698953	+	151	159185840	-	Atu3644	-	hypothetical protein
637	 49.75	-2	699072..699479	+	135	17937352	-	Atu3645	-	hypothetical protein
638	 54.93	-1	699476..699901	-	141	15891295	-	Atu3646	-	hypothetical protein
639	 51.22	-2	700032..700277	+	81	17937354	-	Atu3647	-	hypothetical protein
640	 52.25	-2	700693..700914	+	73	159185841	-	Atu3648	-	hypothetical protein
641	 55.56	-1	701397..701972	+	191	159185842	-	Atu3650	-	hypothetical protein
642	 56.29	0	702043..702909	+	288	15891291	-	Atu3651	-	hypothetical protein
643	 55.04	-1	703047..703889	+	280	159185843	-	Atu3652	-	hypothetical protein
644	 52.32	-2	703937..704173	-	78	17937360	-	Atu3653	-	hypothetical protein
645	 50.78	-2	704727..705242	-	171	159185844	-	Atu3654	-	hypothetical protein
646	 52.91	-1	705579..706145	+	188	159185845	-	Atu3655	-	antioxidant enzyme
647	 55.56	-1	706326..706712	+	128	15891287	-	Atu3656	-	acetyltransferase
648	 47.39	-2	706981..707229	+	82	15891286	-	Atu3657	-	hypothetical protein
649	 52.76	-2	707492..708577	+	361	159185846	-	Atu3658	-	MerR family transcriptional regulator
650	 53.94	-1	709086..709745	-	219	159185847	-	Atu3661	-	hypothetical protein
651	 51.71	-2	710360..711970	+	536	15891283	-	Atu3662	-	hypothetical protein
652	 57.68	0	712197..712619	-	140	159185848	-	Atu3663	-	hypothetical protein
653	 58.85	0	712794..713765	+	323	159185849	ephA	Atu3664	-	epoxide hydrolase
654	 59.17	0	714038..714784	-	248	15891280	ditI	Atu3665	-	short-chain dehydrogenase
655	 52.78	-2	714854..715033	+	59	15891279	-	Atu8034	-	hypothetical protein
656	 58.82	0	715046..715504	+	152	15891278	-	Atu3666	-	hypothetical protein
657	 56.84	0	715559..716026	+	155	15891277	panD	Atu3667	-	aspartate alpha-decarboxylase
658	 60.15	0	716058..716579	-	173	15891276	-	Atu3668	-	siderophore biosynthesis protein
659	 58.59	0	716694..718055	-	453	159185850	-	Atu3669	-	siderophore biosynthesis protein
660	 59.34	0	718087..721473	-	1128	159185851	-	Atu3670	-	siderophore biosynthesis protein
661	 59.18	0	721484..722551	-	355	15891273	-	Atu3671	-	siderophore biosynthesis protein
662	 61.67	0	722591..727153	-	1520	15891272	-	Atu3672	-	polyketide synthase, siderophore biosynthesis protein
663	 59.83	0	727195..729447	-	750	159185852	-	Atu3673	-	siderophore biosynthesis protein
664	 48.04	-2	729520..729723	-	67	17937381	-	Atu3674	-	hypothetical protein
665	 61.56	0	729769..734331	+	1520	15891270	-	Atu3675	-	peptide synthetase, siderophore biosynthesis protein
666	 59.31	0	734328..735224	+	298	15891269	-	Atu3676	-	putative siderophore biosynthesis protein
667	 60.43	0	735221..736696	+	491	15891268	-	Atu3677	-	polyketide synthase, siderophore biosynthesis protein
668	 59.58	0	736711..736950	+	79	159185853	-	Atu3678	-	putative siderophore biosynthesis protein
669	 62.24	0	736961..737479	+	172	15891266	-	Atu3679	-	putative siderophore biosynthesis protein
670	 59.22	0	737476..738039	+	187	159185854	-	Atu3680	-	putative siderophore biosynthesis protein
671	 61.39	0	738077..742510	+	1477	159185855	-	Atu3681	-	polyketide synthetase, siderophore biosynthesis protein
672	 61.25	0	742507..749706	+	2399	15891263	-	Atu3682	-	non-ribosomal peptide synthetase, siderophore biosynthesis protein
673	 60.28	0	749718..757409	+	2563	159185856	-	Atu3683	-	peptide synthetase, siderophore biosynthesis protein
674	 59.77	0	757414..759081	+	555	15891261	-	Atu3684	-	siderophore biosynthesis protein
675	 58.23	0	759096..759842	+	248	159185857	-	Atu3685	-	thioesterase, putative siderophore biosynthesis protein
676	 58.84	0	759870..760763	+	297	15891259	-	Atu3686	-	putative siderophore biosynthesis protein
677	 56.83	0	760897..763335	+	812	159185858	-	Atu3687	-	TonB-dependent receptor
678	 59.28	0	763389..764309	+	306	159185859	fecB	Atu3688	-	ABC transporter, membrane spanning protein (iron(III) dicitrate)
679	 62.76	0	764306..765355	+	349	15891256	fecC	Atu3689	-	ABC transporter, membrane spanning protein (iron(III) dicitrate)
680	 60.92	0	765352..766326	+	324	159185860	fecD	Atu3690	-	ABC transporter, membrane spanning protein (iron (III) dicitrate)
681	 58.08	0	766319..767122	+	267	15891254	fecE	Atu3691	-	ABC transporter, nucleotide binding/ATPase protein (iron (III) dicitrate)
682	 58.93	0	767474..768016	+	180	159185861	-	Atu3692	-	sigma factor
683	 60.19	0	768064..769035	+	323	15891252	fecR	Atu3693	-	two component sensor kinase
684	 63.88	+1	769161..771206	-	681	159185862	pbpC	Atu3694	-	penicillin binding protein
685	 61.04	0	771236..776692	-	1818	159185863	-	Atu3695	-	hypothetical protein
686	 53.97	-1	776811..776999	-	62	17937403	-	Atu3696	-	hypothetical protein
687	 60.80	0	777010..777657	-	215	159185864	lonD	Atu3697	-	ATP-dependent protease LA 2
688	 60.06	0	777750..778718	-	322	159185865	-	Atu3698	-	putative thioredoxin
689	 54.71	-1	778772..779281	-	169	15891247	-	Atu3699	-	hypothetical protein
690	 58.01	0	779833..780525	+	230	15891246	-	Atu3701	-	glutathione S-transferase
691	 62.99	+1	781025..782167	-	380	159185866	trmU	Atu3703	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
692	 57.77	0	782420..783610	-	396	159185867	-	Atu3704	-	hypothetical protein
693	 62.19	0	784049..784696	-	215	159185868	-	Atu3705	-	hypothetical protein
694	 58.90	0	785354..786949	-	531	15891242	serA	Atu3706	-	D-3-phosphoglycerate dehydrogenase
695	 60.73	0	787033..788211	-	392	15891241	serC	Atu3707	-	phosphoserine aminotransferase
696	 57.09	0	788425..789270	-	281	159185869	-	Atu3708	-	outer surface protein
697	 59.94	0	789459..790811	-	450	159185870	mrsA	Atu3709	-	phosphoglucomutase/phosphomannomutase
698	 60.25	0	791000..792946	-	648	159185871	ftsH	Atu3710	-	metalloprotease
699	 59.91	0	793101..794432	-	443	15891237	mesJ	Atu3711	-	hypothetical protein
700	 60.81	0	794457..795446	-	329	159185872	-	Atu3712	-	hypothetical protein
701	 64.04	+1	795620..796153	-	177	15891235	palA	Atu3713	-	omp16 protein
702	 59.56	0	796364..797671	-	435	159185873	tolB	Atu3714	-	translocation protein TolB
703	 61.04	0	797692..798846	-	384	15891233	tolA	Atu3715	-	hypothetical protein
704	 61.66	0	798856..799314	-	152	15891232	tolR	Atu3716	-	tolR protein
705	 58.47	0	799373..800092	-	239	159185874	tolQ	Atu3717	-	tolQ protein
706	 58.96	0	800354..800794	-	146	15891230	-	Atu3718	-	hypothetical protein
707	 57.39	0	800919..801446	-	175	159185875	mutT	Atu3719	-	MutT/nudix family protein
708	 57.51	0	801446..802024	-	192	159185876	-	Atu3720	-	hypothetical protein
709	 53.42	-1	802060..802278	-	72	159185877	-	Atu3721	-	hypothetical protein
710	 62.44	0	802331..803371	-	346	15891226	ruvB	Atu3722	-	Holliday junction DNA helicase B
711	 60.19	0	803458..804075	-	205	15891225	ruvA	Atu3723	-	Holliday junction DNA helicase motor protein
712	 62.38	0	804103..804615	-	170	15891224	ruvC	Atu3724	-	Holliday junction resolvase
713	 61.26	0	804862..807171	+	769	159185878	-	Atu3725	-	methyl-accepting chemotaxis protein
714	 60.98	0	807318..808319	+	333	15891222	-	Atu3726	-	flavin dependant oxidoreductase
715	 56.89	0	808406..809152	-	248	15891221	-	Atu3727	-	hypothetical protein
716	 58.13	0	809350..809853	+	167	159185879	-	Atu3728	-	hypothetical protein
717	 59.48	0	809890..810543	-	217	159185880	-	Atu3729	-	hypothetical protein
718	 58.79	0	810848..811672	-	274	15891218	-	Atu3730	-	hypothetical protein
719	 62.93	+1	811772..812359	-	195	15891217	-	Atu3731	-	5-formyltetrahydrofolate cyclo-ligase
720	 61.66	0	812359..813636	-	425	15891216	-	Atu3732	-	hemolysin
721	 47.89	-2	813639..813851	-	70	17937438	-	Atu3733	-	hypothetical protein
722	 57.41	0	814088..814465	-	125	15891215	-	Atu8191	-	hypothetical protein
723	 58.24	0	814477..814749	-	90	159186374	-	Atu8192	-	hypothetical protein
724	 61.12	0	815073..817055	+	660	15891213	tktA	Atu3736	-	transketolase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.