IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
442	 60.06	0	499522..500550	-	342	15891486	-	Atu3451	-	monooxygenase
443	 60.57	0	500975..502123	+	382	159185745	-	Atu3453	-	isomerase/lactonizing enzyme
444	 67.94	+2	502130..502759	+	209	15891484	-	Atu3454	-	arylesterase
445	 58.47	0	502841..504439	+	532	159185746	-	Atu3455	-	ABC transporter, substrate binding protein (oligopeptide)
446	 61.26	0	504657..505415	-	252	159185747	-	Atu3456	-	ABC transporter, nucleotide binding/ATPase protein
447	 60.22	0	505415..506251	-	278	15891481	-	Atu3457	-	ABC transporter, nucleotide binding/ATPase protein
448	 61.15	0	506256..507143	-	295	15891480	-	Atu3458	-	ABC transporter, membrane spanning protein
449	 58.26	0	507143..508165	-	340	159185748	-	Atu3459	-	ABC transporter, membrane spanning protein
450	 60.35	0	508469..509101	+	210	159185749	-	Atu3460	-	RhtB family transporter
451	 61.04	0	509129..509857	-	242	15891477	-	Atu3461	-	GntR family transcriptional regulator
452	 62.80	+1	509952..510935	-	327	15891476	-	Atu3462	-	AraC family transcriptional regulator
453	 59.54	0	511064..511891	+	275	15891475	cpoF	Atu3463	-	non-heme chloroperoxidase
454	 63.13	+1	511918..512709	+	263	15891474	-	Atu3464	-	dehydrogenase
455	 58.02	0	512723..513208	+	161	159186362	-	Atu8032	-	hypothetical protein
456	 60.26	0	513471..514766	+	431	15891472	-	Atu3465	-	metallo-beta-lactamase superfamily protein
457	 60.17	0	514760..515113	+	117	15891471	-	Atu3466	-	ArsR family transcriptional regulator
458	 61.87	0	515143..515517	+	124	159185750	-	Atu3467	-	hypothetical protein
459	 62.10	0	515514..515951	+	145	159185751	-	Atu3468	-	hypothetical protein
460	 61.07	0	516026..517543	-	505	15891468	pgm	Atu3469	-	phosphoglyceromutase
461	 57.44	0	517516..517710	-	64	159185752	-	Atu3470	-	hypothetical protein
462	 61.74	0	517905..519182	-	425	159185753	bkdB	Atu3471	-	branched-chain alpha-keto acid dehydrogenase subunit E2
463	 60.65	0	519185..520198	-	337	15891465	bkdA2	Atu3472	-	2-oxoisovalerate dehydrogenase beta subunit
464	 60.61	0	520202..521440	-	412	159185754	bkdA1	Atu3473	-	2-oxoisovalerate dehydrogenase alpha subunit
465	 62.41	0	521485..522612	-	375	159185755	mmgC	Atu3474	-	acyl-CoA dehydrogenase
466	 62.15	0	522624..523862	-	412	159185756	-	Atu3475	-	acetyl-CoA C-acetyltransferase
467	 58.23	0	523971..524444	+	157	15891461	-	Atu3476	-	AsnC family transcriptional regulator
468	 60.70	0	524524..525696	+	390	159185757	acd	Atu3477	-	acyl-CoA dehydrogenase
469	 59.80	0	525705..527306	+	533	159185758	mccB	Atu3478	-	3-methylcrotonoyl-CoA carboxylase beta subunit
470	 61.50	0	527314..529305	+	663	159185759	mccA	Atu3479	-	3-methylcrotonyl-CoA carboxylase alpha subunit
471	 62.24	0	529307..530233	+	308	159185760	hmgL	Atu3480	-	hydroxymethylglutaryl-CoA lyase
472	 63.84	+1	530223..530999	+	258	159185761	-	Atu3481	-	enoyl-CoA hydratase
473	 62.46	0	531140..532018	+	292	159185762	panC	Atu3482	-	pantoate--beta-alanine ligase
474	 62.38	0	532015..532854	+	279	15891454	panB	Atu3483	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
475	 59.47	0	532889..534181	-	430	159185763	-	Atu3484	-	hypothetical protein
476	 58.94	0	534232..536328	-	698	159185764	-	Atu3485	-	short chain dehydrogenase
477	 57.76	0	536529..537359	+	276	15891451	-	Atu3486	-	DeoR family transcriptional regulator
478	 60.63	0	537407..538417	+	336	159185765	-	Atu3487	-	ABC transporter, substrate binding protein (sugar)
479	 59.95	0	538644..540176	+	510	159185766	-	Atu3488	-	ABC transporter, nucleotide binding/ATPase protein
480	 62.87	+1	540191..541192	+	333	15891448	-	Atu3489	-	ABC transporter, membrane spanning protein
481	 61.13	0	541189..542199	+	336	159185767	-	Atu3490	-	ABC transporter, membrane spanning protein
482	 54.63	-1	542203..542526	+	107	15891446	-	Atu3491	-	hypothetical protein
483	 61.17	0	542523..543905	+	460	15891445	-	Atu3492	-	sugar kinase
484	 60.10	0	543958..544794	-	278	15891444	-	Atu3493	-	non-heme haloperoxidase
485	 59.48	0	545112..545807	-	231	15891443	-	Atu3494	-	hypothetical protein
486	 59.33	0	545969..547903	-	644	15891442	-	Atu3495	-	GGDEF family protein
487	 53.45	-1	547913..548419	-	168	15891441	-	Atu3496	-	hypothetical protein
488	 57.18	0	548600..548947	-	115	159185768	-	Atu3497	-	hypothetical protein
489	 62.21	0	549017..550453	+	478	159185769	-	Atu3498	-	aldehyde dehydrogenase
490	 58.18	0	550981..551793	+	270	15891438	-	Atu3500	-	hypothetical protein
491	 60.53	0	551809..552834	-	341	15891437	-	Atu3501	-	ABC transporter, nucleotide binding/ATPase protein
492	 61.26	0	552840..553727	-	295	15891436	-	Atu3502	-	ABC transporter, membrane spanning protein
493	 60.79	0	553731..554564	-	277	159185770	-	Atu3503	-	ABC transporter, membrane spanning protein
494	 57.65	0	554626..555612	-	328	159185771	-	Atu3504	-	ABC transporter, substrate binding protein (sulfate)
495	 60.49	0	555782..556834	-	350	159185772	-	Atu3505	-	enoyl-CoA hydratase
496	 54.73	-1	556991..557392	+	133	159185773	-	Atu3506	-	hypothetical protein
497	 62.82	+1	557462..558241	-	259	159185774	-	Atu3507	-	hypothetical protein
498	 62.42	0	558539..559291	+	250	15891430	ubiG	Atu3508	-	3-demethylubiquinone-9 3-methyltransferase
499	 60.37	0	559377..559805	-	142	15891429	-	Atu3509	-	hypothetical protein
500	 61.21	0	559802..560662	-	286	159185775	-	Atu3510	-	amidohydrolase
501	 56.44	0	560687..560989	-	100	15891427	grx	Atu3511	-	glutaredoxin
502	 65.03	+1	561002..561793	-	263	159185776	comF	Atu3512	-	competence protein F
503	 61.90	0	561936..562817	+	293	159185777	-	Atu3513	-	methyltransferase
504	 51.39	-2	562835..563050	-	71	17937222	pilA	Atu3514	-	fimbriae associated protein
505	 58.41	0	563122..563436	-	104	159185778	-	Atu3515	-	hypothetical protein
506	 60.14	0	563609..564022	-	137	15891423	-	Atu3516	-	MutT family NTP pyrophosphatase
507	 59.20	0	564019..564795	-	258	159185779	-	Atu3517	-	acetyltransferase
508	 61.67	0	564814..566055	-	413	15891421	argJ	Atu3518	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
509	 56.63	0	566148..567014	-	288	159185780	ppiD	Atu3519	-	peptidyl-prolyl cis-trans isomerase
510	 60.87	0	567257..569965	+	902	159185781	secA	Atu3520	-	preprotein translocase subunit SecA
511	 60.18	0	570113..571006	+	297	15891418	-	Atu3521	-	permease
512	 58.60	0	571088..572290	+	400	159185782	-	Atu3522	-	glucans biosynthesis protein
513	 57.91	0	572347..573762	+	471	159185783	-	Atu3523	-	polysaccharide biosynthesis associated protein
514	 60.77	0	573771..575042	+	423	159186373	-	Atu8188	-	hypothetical protein
515	 61.54	0	575095..575757	-	220	15891414	-	Atu3525	-	hypothetical protein
516	 61.45	0	576261..577103	-	280	159185784	-	Atu3527	-	hypothetical protein
517	 60.51	0	577129..578118	-	329	15891412	-	Atu3528	-	oxidoreductase
518	 61.22	0	578115..579308	-	397	15891411	uxuA	Atu3529	-	mannonate dehydratase
519	 62.53	0	579312..580784	-	490	15891410	uxuB	Atu3530	-	mannitol dehydrogenase
520	 63.02	+1	580802..581542	-	246	15891409	fabG	Atu3531	-	3-oxoacyl-(acyl-carrier-protein) reductase
521	 61.33	0	581565..582314	-	249	15891408	-	Atu3532	-	GntR family transcriptional regulator
522	 58.98	0	582466..583506	+	346	159185785	-	Atu3533	-	ABC transporter, substrate binding protein (sugar)
523	 61.86	0	583646..584686	+	346	15891406	-	Atu3534	-	ABC transporter, membrane spanning protein
524	 61.76	0	584697..585674	+	325	15891405	-	Atu3535	-	ABC transporter, membrane spanning protein
525	 59.60	0	585679..587220	+	513	15891404	-	Atu3536	-	ABC transporter, nucleotide binding/ATPase protein
526	 58.57	0	587224..587433	-	69	17937244	-	Atu3537	-	hypothetical protein
527	 61.82	0	587569..588084	+	171	15891403	-	Atu3538	-	hypothetical protein
528	 56.45	0	588115..588672	-	185	15891402	-	Atu3539	-	hypothetical protein
529	 60.41	0	588723..589361	-	212	15891401	-	Atu3540	-	hypothetical protein
530	 62.02	0	589442..590044	+	200	159185786	-	Atu3541	-	hypothetical protein
531	 62.75	0	590164..590955	+	263	159185787	prp1	Atu3542	-	serine/threonine protein phosphatase I
532	 65.90	+1	590970..592664	-	564	15891398	dhbK	Atu3543	-	3,4-dihydroxy-2-butanone kinase
533	 63.40	+1	592991..594244	+	417	15891397	arsB	Atu3544	-	arsenical pump membrane protein
534	 64.24	+1	594315..594644	-	109	15891396	-	Atu3545	-	hypothetical protein
535	 57.80	0	594873..596891	+	672	15891395	-	Atu3546	-	hypothetical protein
536	 63.62	+1	596961..597617	-	218	15891394	-	Atu3547	-	hypothetical protein
537	 56.40	0	597762..598988	-	408	15891393	-	Atu3548	-	glycosyltransferase
538	 50.30	-2	598985..600322	-	445	15891392	-	Atu3549	-	hypothetical protein
539	 55.78	-1	600315..601793	-	492	159185788	-	Atu3550	-	putative succinoglycan transport protein
540	 58.82	0	601955..603190	-	411	15891390	-	Atu3551	-	glycosyltransferase
541	 59.14	0	603686..605014	+	442	159185789	-	Atu3553	-	hypothetical protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.