IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
399	 60.69	0	451499..452335	+	278	159185727	-	Atu3406	-	hypothetical protein
400	 62.52	0	452350..453723	+	457	15891526	-	Atu3407	-	hypothetical protein
401	 58.51	0	453848..454693	+	281	15891525	hadL	Atu3408	-	2-haloalkanoic acid dehalogenase
402	 56.86	0	454787..456397	+	536	159185728	-	Atu3409	-	ABC transporter, substrate binding protein (oligopeptide)
403	 59.62	0	456490..457440	+	316	15891523	-	Atu3410	-	ABC transporter, membrane spanning protein
404	 58.57	0	457440..458291	+	283	15891522	-	Atu3411	-	ABC transporter, membrane spanning protein
405	 59.18	0	458291..459946	+	551	15891521	-	Atu3412	-	ABC transporter, nucleotide binding/ATPase protein
406	 50.52	-2	460133..460609	-	158	159185729	lrp	Atu3413	-	AsnC family transcriptional regulator
407	 63.57	+1	460840..462165	+	441	15891519	-	Atu3414	-	putative AgaE
408	 60.79	0	462256..463191	-	311	159185730	-	Atu3415	-	ABC transporter, substrate binding protein
409	 60.17	0	463331..464269	-	312	15891517	-	Atu3416	-	ABC transporter, substrate binding protein
410	 59.71	0	464295..466106	-	603	159185731	-	Atu3417	-	ABC transporter, nucleotide binding/ATPase protein
411	 60.62	0	466120..466665	-	181	15891515	-	Atu3418	-	acetyltransferase
412	 62.29	0	466689..467876	-	395	159185732	-	Atu3419	-	hippurate hydrolase
413	 60.70	0	467960..469300	-	446	159185733	-	Atu3420	-	monooxygenase
414	 62.87	+1	469324..470325	-	333	159185734	-	Atu3421	-	hypothetical protein
415	 57.56	0	470628..471077	+	149	159185735	-	Atu3423	-	hypothetical protein
416	 59.79	0	471105..472049	-	314	159185736	-	Atu3424	-	hypothetical protein
417	 62.45	0	472101..472646	-	181	15891509	-	Atu3425	-	hypothetical protein
418	 60.26	0	472801..473970	-	389	159185737	-	Atu3426	-	putative sulfonate monooxygenase
419	 53.14	-1	474100..474417	+	105	17937135	-	Atu3427	-	hypothetical protein
420	 59.22	0	474470..475087	-	205	15891507	-	Atu3428	-	hypothetical protein
421	 60.85	0	475289..475477	+	62	15891506	-	Atu3429	-	hypothetical protein
422	 62.37	0	475474..476544	+	356	15891505	-	Atu3430	-	alkanesulfonate monooxygenase
423	 62.68	0	476602..477780	-	392	15891504	acd	Atu3431	-	acyl-CoA dehydrogenase
424	 61.72	0	477777..478808	-	343	159185738	-	Atu3432	-	desulfurizing enzyme
425	 57.71	0	478878..480485	-	535	159185739	-	Atu3433	-	ABC transporter, substrate binding protein (oligopeptide)
426	 60.81	0	480755..481744	+	329	159185740	-	Atu3434	-	ABC transporter, membrane spanning protein (oligopeptide)
427	 61.65	0	481741..482736	+	331	159185741	-	Atu3435	-	ABC transporter, membrane spanning protein (oligopeptide)
428	 62.26	0	482733..483731	+	332	15891499	-	Atu3436	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
429	 64.00	+1	483709..484644	+	311	15891498	-	Atu3437	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
430	 62.78	+1	484663..485718	+	351	15891497	-	Atu3438	-	putative oxidoreductase
431	 63.12	+1	485786..487024	+	412	159185742	acd	Atu3439	-	acyl-CoA dehydrogenase
432	 62.14	0	487044..488015	+	323	15891495	-	Atu3440	-	LysR family transcriptional regulator
433	 61.12	0	488032..489384	-	450	15891494	-	Atu3441	-	nitrilotriacetate monooxygenase
434	 58.52	0	489440..491035	-	531	15891493	-	Atu3442	-	ABC transporter, substrate binding protein (oligopeptide)
435	 57.33	0	491078..491527	+	149	159185743	-	Atu3443	-	hypothetical protein
436	 57.29	0	491750..493381	-	543	159185744	-	Atu3444	-	ABC transporter, substrate binding protein (oligopeptide)
437	 61.08	0	493374..494573	-	399	15891491	-	Atu3445	-	hippurate hydrolase
438	 60.26	0	494667..495836	-	389	15891490	-	Atu3446	-	monooxygenase
439	 62.30	0	495827..496720	-	297	15891489	-	Atu3447	-	hypothetical protein
440	 62.20	0	496728..497780	-	350	15891488	-	Atu3448	-	putative dibenzothiophene desulfurization enzyme B
441	 61.09	0	498128..499435	+	435	15891487	-	Atu3450	-	nitrilotriacetate monooxygenase
442	 60.06	0	499522..500550	-	342	15891486	-	Atu3451	-	monooxygenase
443	 60.57	0	500975..502123	+	382	159185745	-	Atu3453	-	isomerase/lactonizing enzyme
444	 67.94	+2	502130..502759	+	209	15891484	-	Atu3454	-	arylesterase
445	 58.47	0	502841..504439	+	532	159185746	-	Atu3455	-	ABC transporter, substrate binding protein (oligopeptide)
446	 61.26	0	504657..505415	-	252	159185747	-	Atu3456	-	ABC transporter, nucleotide binding/ATPase protein
447	 60.22	0	505415..506251	-	278	15891481	-	Atu3457	-	ABC transporter, nucleotide binding/ATPase protein
448	 61.15	0	506256..507143	-	295	15891480	-	Atu3458	-	ABC transporter, membrane spanning protein
449	 58.26	0	507143..508165	-	340	159185748	-	Atu3459	-	ABC transporter, membrane spanning protein
450	 60.35	0	508469..509101	+	210	159185749	-	Atu3460	-	RhtB family transporter
451	 61.04	0	509129..509857	-	242	15891477	-	Atu3461	-	GntR family transcriptional regulator
452	 62.80	+1	509952..510935	-	327	15891476	-	Atu3462	-	AraC family transcriptional regulator
453	 59.54	0	511064..511891	+	275	15891475	cpoF	Atu3463	-	non-heme chloroperoxidase
454	 63.13	+1	511918..512709	+	263	15891474	-	Atu3464	-	dehydrogenase
455	 58.02	0	512723..513208	+	161	159186362	-	Atu8032	-	hypothetical protein
456	 60.26	0	513471..514766	+	431	15891472	-	Atu3465	-	metallo-beta-lactamase superfamily protein
457	 60.17	0	514760..515113	+	117	15891471	-	Atu3466	-	ArsR family transcriptional regulator
458	 61.87	0	515143..515517	+	124	159185750	-	Atu3467	-	hypothetical protein
459	 62.10	0	515514..515951	+	145	159185751	-	Atu3468	-	hypothetical protein
460	 61.07	0	516026..517543	-	505	15891468	pgm	Atu3469	-	phosphoglyceromutase
461	 57.44	0	517516..517710	-	64	159185752	-	Atu3470	-	hypothetical protein
462	 61.74	0	517905..519182	-	425	159185753	bkdB	Atu3471	-	branched-chain alpha-keto acid dehydrogenase subunit E2
463	 60.65	0	519185..520198	-	337	15891465	bkdA2	Atu3472	-	2-oxoisovalerate dehydrogenase beta subunit
464	 60.61	0	520202..521440	-	412	159185754	bkdA1	Atu3473	-	2-oxoisovalerate dehydrogenase alpha subunit
465	 62.41	0	521485..522612	-	375	159185755	mmgC	Atu3474	-	acyl-CoA dehydrogenase
466	 62.15	0	522624..523862	-	412	159185756	-	Atu3475	-	acetyl-CoA C-acetyltransferase
467	 58.23	0	523971..524444	+	157	15891461	-	Atu3476	-	AsnC family transcriptional regulator
468	 60.70	0	524524..525696	+	390	159185757	acd	Atu3477	-	acyl-CoA dehydrogenase
469	 59.80	0	525705..527306	+	533	159185758	mccB	Atu3478	-	3-methylcrotonoyl-CoA carboxylase beta subunit
470	 61.50	0	527314..529305	+	663	159185759	mccA	Atu3479	-	3-methylcrotonyl-CoA carboxylase alpha subunit
471	 62.24	0	529307..530233	+	308	159185760	hmgL	Atu3480	-	hydroxymethylglutaryl-CoA lyase
472	 63.84	+1	530223..530999	+	258	159185761	-	Atu3481	-	enoyl-CoA hydratase
473	 62.46	0	531140..532018	+	292	159185762	panC	Atu3482	-	pantoate--beta-alanine ligase
474	 62.38	0	532015..532854	+	279	15891454	panB	Atu3483	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
475	 59.47	0	532889..534181	-	430	159185763	-	Atu3484	-	hypothetical protein
476	 58.94	0	534232..536328	-	698	159185764	-	Atu3485	-	short chain dehydrogenase
477	 57.76	0	536529..537359	+	276	15891451	-	Atu3486	-	DeoR family transcriptional regulator
478	 60.63	0	537407..538417	+	336	159185765	-	Atu3487	-	ABC transporter, substrate binding protein (sugar)
479	 59.95	0	538644..540176	+	510	159185766	-	Atu3488	-	ABC transporter, nucleotide binding/ATPase protein
480	 62.87	+1	540191..541192	+	333	15891448	-	Atu3489	-	ABC transporter, membrane spanning protein
481	 61.13	0	541189..542199	+	336	159185767	-	Atu3490	-	ABC transporter, membrane spanning protein
482	 54.63	-1	542203..542526	+	107	15891446	-	Atu3491	-	hypothetical protein
483	 61.17	0	542523..543905	+	460	15891445	-	Atu3492	-	sugar kinase
484	 60.10	0	543958..544794	-	278	15891444	-	Atu3493	-	non-heme haloperoxidase
485	 59.48	0	545112..545807	-	231	15891443	-	Atu3494	-	hypothetical protein
486	 59.33	0	545969..547903	-	644	15891442	-	Atu3495	-	GGDEF family protein
487	 53.45	-1	547913..548419	-	168	15891441	-	Atu3496	-	hypothetical protein
488	 57.18	0	548600..548947	-	115	159185768	-	Atu3497	-	hypothetical protein
489	 62.21	0	549017..550453	+	478	159185769	-	Atu3498	-	aldehyde dehydrogenase
490	 58.18	0	550981..551793	+	270	15891438	-	Atu3500	-	hypothetical protein
491	 60.53	0	551809..552834	-	341	15891437	-	Atu3501	-	ABC transporter, nucleotide binding/ATPase protein
492	 61.26	0	552840..553727	-	295	15891436	-	Atu3502	-	ABC transporter, membrane spanning protein
493	 60.79	0	553731..554564	-	277	159185770	-	Atu3503	-	ABC transporter, membrane spanning protein
494	 57.65	0	554626..555612	-	328	159185771	-	Atu3504	-	ABC transporter, substrate binding protein (sulfate)
495	 60.49	0	555782..556834	-	350	159185772	-	Atu3505	-	enoyl-CoA hydratase
496	 54.73	-1	556991..557392	+	133	159185773	-	Atu3506	-	hypothetical protein
497	 62.82	+1	557462..558241	-	259	159185774	-	Atu3507	-	hypothetical protein
498	 62.42	0	558539..559291	+	250	15891430	ubiG	Atu3508	-	3-demethylubiquinone-9 3-methyltransferase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.