IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
347	 59.12	0	387134..388564	-	476	15891580	manC	Atu3353	-	mannose-1-phosphate guanylyltransferase (GDP)
348	 62.89	+1	388845..391253	-	802	159185706	-	Atu3354	-	pyrroloquinoline-quinone-dependent quinate dehydrogenase
349	 61.56	0	391676..392575	+	299	159185707	-	Atu3355	-	LysR family transcriptional regulator
350	 61.64	0	392736..395024	+	762	15891577	-	Atu3356	-	malic enzyme
351	 60.71	0	395279..396118	+	279	159185708	-	Atu3357	-	ABC transporter, substrate binding protein (amino acid)
352	 58.93	0	396414..397046	+	210	159185709	-	Atu3358	-	ABC transporter, membrane spanning protein (amino acid)
353	 60.03	0	397043..397825	+	260	15891574	-	Atu3359	-	ABC transporter, membrane spanning protein (amino acid)
354	 60.66	0	397838..398653	+	271	159185710	-	Atu3360	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
355	 62.88	+1	398658..400004	+	448	15891572	-	Atu3361	-	hypothetical protein
356	 62.55	0	400031..401341	+	436	15891571	-	Atu3362	-	monooxygenase
357	 57.51	0	401420..403156	-	578	15891570	-	Atu3363	-	sensory methylation accepting chemotaxis protein
358	 63.16	+1	403471..404724	+	417	15891569	-	Atu3364	-	D-amino acid dehydrogenase
359	 57.58	0	404740..405300	-	186	159185711	-	Atu3365	-	hypothetical protein
360	 56.10	-1	405343..405588	-	81	159186369	-	Atu8094	-	hypothetical protein
361	 55.93	-1	405983..406522	+	179	159185712	-	Atu3366	-	tripartite ATP-independent periplasmic transporter DctQ
362	 60.00	0	406555..408024	+	489	15891565	-	Atu3367	-	TRAP dicarboxylate transporter, DctM subunit
363	 56.56	0	408413..409510	-	365	15891564	-	Atu3368	-	periplasmic mannitol-binding protein
364	 63.10	+1	409815..410570	+	251	15891563	-	Atu3369	-	hypothetical protein
365	 59.57	0	410653..411681	-	342	159185713	-	Atu3370	-	ABC transporter, membrane spanning protein (sugar)
366	 57.85	0	411714..413255	-	513	159185714	-	Atu3371	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
367	 58.82	0	413489..414418	-	309	15891560	-	Atu3372	-	ABC transporter, substrate binding protein (sugar)
368	 59.39	0	414936..416378	-	480	159185715	-	Atu3374	-	amidohydrolase
369	 58.81	0	416506..418083	-	525	15891557	-	Atu3375	-	ABC transporter, substrate binding protein (peptide)
370	 59.60	0	418080..418928	-	282	159185716	-	Atu3376	-	beta-lactamase
371	 61.65	0	418936..420570	-	544	15891555	-	Atu3377	-	ABC transporter, nucleotide binding/ATPase protein (peptide)
372	 63.00	+1	420567..421385	-	272	15891554	-	Atu3378	-	ABC transporter, membrane spanning protein (oligopeptide)
373	 60.00	0	421382..422326	-	314	15891553	dppB	Atu3379	-	ABC transporter, membrane spanning protein (peptide)
374	 58.72	0	422507..423412	-	301	159185717	-	Atu3381	-	LysR family transcriptional regulator
375	 61.04	0	423621..424934	-	437	159185718	prsE2	Atu3382	-	HlyD family secretion protein
376	 61.74	0	424921..426768	-	615	15891550	prsD	Atu3383	-	rhizobicin secretion
377	 60.05	0	426783..427538	-	251	15891549	-	Atu3384	-	hypothetical protein
378	 58.59	0	427642..430413	-	923	159185719	hasR	Atu3385	-	heme receptor
379	 61.45	0	430563..431558	-	331	15891547	-	Atu3386	-	two component sensor kinase
380	 56.29	0	431670..432170	-	166	15891546	pfrI	Atu3387	-	sigma factor
381	 61.89	0	432382..433134	-	250	15891545	fecE	Atu3388	-	ABC transporter, nucleotide binding/ATPase protein (iron)
382	 61.52	0	433128..434195	-	355	15891544	-	Atu3389	-	ABC transporter, membrane spanning protein (iron)
383	 58.68	0	434192..435331	-	379	15891543	-	Atu3390	-	ABC transporter, substrate binding protein (iron)
384	 56.44	0	435428..436561	-	377	15891542	-	Atu3391	-	ABC transporter, substrate binding protein (iron)
385	 59.76	0	436675..437499	+	274	15891541	-	Atu3392	-	methyltransferase
386	 58.73	0	437676..438116	-	146	15891540	-	Atu3393	-	pseudoazurin
387	 63.05	+1	438113..438913	-	266	15891539	fecE	Atu3394	-	ABC transporter, nucleotide binding/ATPase protein (iron)
388	 63.31	+1	438910..439863	-	317	159185720	-	Atu3395	-	ABC transporter, membrane spanning protein (iron (III))
389	 60.47	0	439935..440966	-	343	15891537	-	Atu3396	-	ABC transporter, substrate binding protein (iron)
390	 59.82	0	441410..442285	-	291	159185721	-	Atu3397	-	hypothetical protein
391	 63.11	+1	442488..443612	+	374	15891535	argE	Atu3398	-	acetylornithine deacetylase
392	 62.88	+1	443635..444558	+	307	159185722	-	Atu3399	-	2-hydroxyacid dehydrogenase
393	 56.58	0	444587..444943	+	118	15891533	-	Atu3400	-	hypothetical protein
394	 63.05	+1	445133..446596	+	487	159185723	-	Atu3401	-	aldehyde dehydrogenase
395	 62.36	0	446610..447653	+	347	159185724	-	Atu3402	-	3-isopropylmalate dehydrogenase
396	 62.48	0	447669..449126	+	485	159185725	attK2	Atu3403	-	succinate semialdehyde dehydrogenase
397	 60.08	0	449217..450491	-	424	15891529	ordL	Atu3404	-	oxidoreductase
398	 55.16	-1	450507..451175	-	222	159185726	hadL	Atu3405	-	haloalkanoic acid dehalogenase
399	 60.69	0	451499..452335	+	278	159185727	-	Atu3406	-	hypothetical protein
400	 62.52	0	452350..453723	+	457	15891526	-	Atu3407	-	hypothetical protein
401	 58.51	0	453848..454693	+	281	15891525	hadL	Atu3408	-	2-haloalkanoic acid dehalogenase
402	 56.86	0	454787..456397	+	536	159185728	-	Atu3409	-	ABC transporter, substrate binding protein (oligopeptide)
403	 59.62	0	456490..457440	+	316	15891523	-	Atu3410	-	ABC transporter, membrane spanning protein
404	 58.57	0	457440..458291	+	283	15891522	-	Atu3411	-	ABC transporter, membrane spanning protein
405	 59.18	0	458291..459946	+	551	15891521	-	Atu3412	-	ABC transporter, nucleotide binding/ATPase protein
406	 50.52	-2	460133..460609	-	158	159185729	lrp	Atu3413	-	AsnC family transcriptional regulator
407	 63.57	+1	460840..462165	+	441	15891519	-	Atu3414	-	putative AgaE
408	 60.79	0	462256..463191	-	311	159185730	-	Atu3415	-	ABC transporter, substrate binding protein
409	 60.17	0	463331..464269	-	312	15891517	-	Atu3416	-	ABC transporter, substrate binding protein
410	 59.71	0	464295..466106	-	603	159185731	-	Atu3417	-	ABC transporter, nucleotide binding/ATPase protein
411	 60.62	0	466120..466665	-	181	15891515	-	Atu3418	-	acetyltransferase
412	 62.29	0	466689..467876	-	395	159185732	-	Atu3419	-	hippurate hydrolase
413	 60.70	0	467960..469300	-	446	159185733	-	Atu3420	-	monooxygenase
414	 62.87	+1	469324..470325	-	333	159185734	-	Atu3421	-	hypothetical protein
415	 57.56	0	470628..471077	+	149	159185735	-	Atu3423	-	hypothetical protein
416	 59.79	0	471105..472049	-	314	159185736	-	Atu3424	-	hypothetical protein
417	 62.45	0	472101..472646	-	181	15891509	-	Atu3425	-	hypothetical protein
418	 60.26	0	472801..473970	-	389	159185737	-	Atu3426	-	putative sulfonate monooxygenase
419	 53.14	-1	474100..474417	+	105	17937135	-	Atu3427	-	hypothetical protein
420	 59.22	0	474470..475087	-	205	15891507	-	Atu3428	-	hypothetical protein
421	 60.85	0	475289..475477	+	62	15891506	-	Atu3429	-	hypothetical protein
422	 62.37	0	475474..476544	+	356	15891505	-	Atu3430	-	alkanesulfonate monooxygenase
423	 62.68	0	476602..477780	-	392	15891504	acd	Atu3431	-	acyl-CoA dehydrogenase
424	 61.72	0	477777..478808	-	343	159185738	-	Atu3432	-	desulfurizing enzyme
425	 57.71	0	478878..480485	-	535	159185739	-	Atu3433	-	ABC transporter, substrate binding protein (oligopeptide)
426	 60.81	0	480755..481744	+	329	159185740	-	Atu3434	-	ABC transporter, membrane spanning protein (oligopeptide)
427	 61.65	0	481741..482736	+	331	159185741	-	Atu3435	-	ABC transporter, membrane spanning protein (oligopeptide)
428	 62.26	0	482733..483731	+	332	15891499	-	Atu3436	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
429	 64.00	+1	483709..484644	+	311	15891498	-	Atu3437	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
430	 62.78	+1	484663..485718	+	351	15891497	-	Atu3438	-	putative oxidoreductase
431	 63.12	+1	485786..487024	+	412	159185742	acd	Atu3439	-	acyl-CoA dehydrogenase
432	 62.14	0	487044..488015	+	323	15891495	-	Atu3440	-	LysR family transcriptional regulator
433	 61.12	0	488032..489384	-	450	15891494	-	Atu3441	-	nitrilotriacetate monooxygenase
434	 58.52	0	489440..491035	-	531	15891493	-	Atu3442	-	ABC transporter, substrate binding protein (oligopeptide)
435	 57.33	0	491078..491527	+	149	159185743	-	Atu3443	-	hypothetical protein
436	 57.29	0	491750..493381	-	543	159185744	-	Atu3444	-	ABC transporter, substrate binding protein (oligopeptide)
437	 61.08	0	493374..494573	-	399	15891491	-	Atu3445	-	hippurate hydrolase
438	 60.26	0	494667..495836	-	389	15891490	-	Atu3446	-	monooxygenase
439	 62.30	0	495827..496720	-	297	15891489	-	Atu3447	-	hypothetical protein
440	 62.20	0	496728..497780	-	350	15891488	-	Atu3448	-	putative dibenzothiophene desulfurization enzyme B
441	 61.09	0	498128..499435	+	435	15891487	-	Atu3450	-	nitrilotriacetate monooxygenase
442	 60.06	0	499522..500550	-	342	15891486	-	Atu3451	-	monooxygenase
443	 60.57	0	500975..502123	+	382	159185745	-	Atu3453	-	isomerase/lactonizing enzyme
444	 67.94	+2	502130..502759	+	209	15891484	-	Atu3454	-	arylesterase
445	 58.47	0	502841..504439	+	532	159185746	-	Atu3455	-	ABC transporter, substrate binding protein (oligopeptide)
446	 61.26	0	504657..505415	-	252	159185747	-	Atu3456	-	ABC transporter, nucleotide binding/ATPase protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.