IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1752	 58.23	0	1971017..1971727	-	236	159186323	bme13	Atu4795	-	LuxR family transcriptional regulator
1753	 55.81	-1	1971814..1972458	-	214	159186324	-	Atu4796	-	hypothetical protein
1754	 56.46	0	1972464..1973276	-	270	15890194	rfbF	Atu4797	-	glucose-1-phosphate cytidylyltransferase
1755	 53.60	-1	1973273..1974565	-	430	15890193	-	Atu4798	-	hypothetical protein
1756	 57.39	0	1974870..1975397	+	175	159186325	-	Atu4799	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1757	 56.77	0	1975402..1976745	-	447	159186326	-	Atu4800	-	hypothetical protein
1758	 60.60	0	1976759..1977829	-	356	159186327	-	Atu4801	-	NAD-dependent epimerase/dehydratase
1759	 57.76	0	1977947..1979350	-	467	159186328	hemL	Atu4802	-	glutamate-1-semialdehyde 2,1-aminomutase
1760	 51.58	-2	1979566..1980294	-	242	159186329	-	Atu4803	-	two component response regulator
1761	 57.53	0	1980996..1983404	+	802	15890187	-	Atu4805	-	two component sensor kinase/response regulator hybrid
1762	 60.62	0	1983438..1984397	-	319	15890186	pssF	Atu4806	-	glycosyltransferase
1763	 60.65	0	1984394..1985905	-	503	159186330	pssL	Atu4807	-	exopolysaccharide export protein
1764	 55.96	-1	1986131..1987363	-	410	15890184	amsJ	Atu4808	-	exopolysaccharide synthesis protein
1765	 59.42	0	1987634..1988833	+	399	15890183	-	Atu4809	-	glycosyltransferase
1766	 57.95	0	1988838..1990157	+	439	15890182	-	Atu4810	-	hypothetical protein
1767	 59.08	0	1990412..1991557	+	381	159186331	rfe	Atu4811	-	undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase
1768	 59.94	0	1991565..1992263	+	232	159186332	bme2	Atu4812	-	hypothetical protein
1769	 57.14	0	1992320..1993537	+	405	159186333	bme3	Atu4813	-	hypothetical protein
1770	 63.55	+1	1993541..1994149	+	202	15890178	bme4	Atu4814	-	acetyltransferase
1771	 59.10	0	1994113..1995288	-	391	15890177	bme6	Atu4815	-	glycosyltransferase
1772	 62.15	0	1995285..1996568	-	427	15890176	bme7	Atu4816	-	glycosyltransferase
1773	 57.66	0	1996565..1997818	-	417	159186334	bme8	Atu4817	-	glycosyltransferase
1774	 57.61	0	1998206..1998724	-	172	159186335	lrp	Atu4818	-	AsnC family transcriptional regulator
1775	 58.11	0	1998786..1999451	+	221	159186366	-	Atu8042	-	hypothetical protein
1776	 62.13	0	1999471..1999845	+	124	15890171	-	Atu4819	-	hypothetical protein
1777	 57.83	0	1999884..2000777	-	297	15890170	-	Atu4820	-	hypothetical protein
1778	 58.85	0	2000774..2001553	-	259	15890169	fabG	Atu4821	-	3-oxoacyl-(acyl-carrier protein) reductase
1779	 59.72	0	2001585..2003225	-	546	15890168	-	Atu4822	-	acyl-CoA synthetase
1780	 59.83	0	2003222..2004391	-	389	15890167	acaB	Atu4823	-	acetyl-CoA acetyltransferase
1781	 62.98	+1	2004388..2005254	-	288	159186336	-	Atu4824	-	IclR family transcriptional regulator
1782	 59.19	0	2005256..2006071	-	271	15890165	-	Atu4825	-	dehydrogenase
1783	 57.86	0	2006136..2007146	-	336	159186337	-	Atu4826	-	ABC transporter, substrate binding protein
1784	 58.09	0	2007212..2009089	-	625	159186338	-	Atu4827	-	ABC transporter, membrane spanning protein
1785	 61.78	0	2010184..2010879	-	231	15890161	-	Atu4830	-	hypothetical protein
1786	 60.51	0	2010876..2011265	-	129	159186339	-	Atu4831	-	hypothetical protein
1787	 56.27	0	2011653..2012027	+	124	17938521	-	Atu4832	-	hypothetical protein
1788	 60.63	0	2012401..2014803	+	800	159186340	cga	Atu4833	-	glucoamylase
1789	 61.59	0	2014841..2015845	+	334	15890158	-	Atu4834	-	6-phosphogluconate dehydrogenase-like protein
1790	 60.17	0	2015842..2017227	+	461	15890157	-	Atu4835	-	glucose-6-phosphate 1-dehydrogenase
1791	 57.23	0	2017260..2017937	+	225	15890156	-	Atu4836	-	hypothetical protein
1792	 55.20	-1	2018054..2018611	+	185	15890155	-	Atu4837	-	hypothetical protein
1793	 54.80	-1	2018638..2019168	+	176	15890154	-	Atu4838	-	outer membrane lipoprotein
1794	 59.51	0	2019188..2019886	+	232	15890153	csgA	Atu4839	-	C factor
1795	 54.90	-1	2020376..2020579	-	67	15890152	-	Atu4840	-	hypothetical protein
1796	 54.10	-1	2020610..2021341	-	243	15890151	deoR	Atu4841	-	DeoR family transcriptional regulator
1797	 57.12	0	2021679..2022725	+	348	159186341	-	Atu4842	-	ABC transporter, substrate binding protein (sugar)
1798	 58.13	0	2022797..2024296	+	499	159186342	-	Atu4843	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1799	 55.21	-1	2024310..2025287	+	325	15890148	rbsC	Atu4844	-	ABC transporter, membrane spanning protein (sugar)
1800	 57.76	0	2025302..2026300	+	332	159186343	ydeZ	Atu4845	-	ABC transporter, membrane spanning protein (sugar)
1801	 56.97	0	2026305..2027387	+	360	159186344	-	Atu4846	-	hypothetical protein
1802	 59.42	0	2027412..2028350	+	312	15890145	rbsk	Atu4847	-	ribokinase
1803	 61.88	0	2028370..2029329	+	319	159186345	deoC	Atu4848	-	2-deoxyribose-5-phosphate aldolase
1804	 59.10	0	2029371..2031737	+	788	159186346	-	Atu4849	-	NADP-dependent aldehyde dehydrogenase
1805	 63.00	+1	2032206..2032778	+	190	15890141	-	Atu4850	-	hypothetical protein
1806	 61.88	0	2033050..2033634	+	194	159186347	-	Atu4851	-	citrate synthase-like protein
1807	 41.44	-2	2033669..2034211	-	180	15890139	-	Atu4852	-	hypothetical protein
1808	 54.93	-1	2034379..2034966	-	195	159186348	-	Atu4853	-	hypothetical protein
1809	 56.37	0	2035584..2035787	+	67	15890137	-	Atu4854	-	hypothetical protein
1810	 60.19	0	2035809..2039609	-	1266	159186349	traA	Atu4855	-	conjugation protein
1811	 53.83	-1	2040246..2041172	+	308	159186350	-	Atu4856	-	nucleotidyltransferase
1812	 58.04	0	2041332..2041667	+	111	15890133	mobC	Atu4857	-	mobilization protein C
1813	 57.72	0	2041664..2043328	+	554	15890132	traG	Atu4858	-	virulence virD4-like protein
1814	 59.03	0	2043675..2044748	-	357	15890131	-	Atu4859	-	hypothetical protein
1815	 55.56	-1	2045216..2046151	+	311	159186351	-	Atu4860	-	hypothetical protein
1816	 59.68	0	2046717..2047475	-	252	15890129	istB	Atu4861	-	IS21 family transposase
1817	 62.06	0	2047472..2048968	-	498	15890128	istA	Atu4862	-	IS21 family transposase
1818	 55.63	-1	2049367..2049819	+	150	15890126	-	Atu4864	-	MarR family transcriptional regulator
1819	 56.46	0	2050038..2050919	-	293	159186352	-	Atu4865	-	oxidoreductase
1820	 54.58	-1	2051089..2051328	-	79	15890124	-	Atu4866	-	hypothetical protein
1821	 59.03	0	2051470..2052006	-	178	15890123	-	Atu4867	-	hypothetical protein
1822	 59.57	0	2052011..2053081	-	356	15890122	-	Atu4868	-	putative oxidoreductase
1823	 58.39	0	2053277..2053699	+	140	15890121	-	Atu4869	-	hypothetical protein
1824	 57.92	0	2053716..2054675	-	319	15890120	-	Atu4870	-	NADP-dependent quinone oxidoreductase
1825	 55.00	-1	2054871..2055770	+	299	15890118	-	Atu4872	-	LysR family transcriptional regulator
1826	 52.36	-2	2055897..2056469	-	190	15890117	-	Atu4873	-	TetR family transcriptional regulator
1827	 53.33	-1	2056525..2056959	+	144	15890116	-	Atu4874	-	hypothetical protein
1828	 57.21	0	2057365..2057766	+	133	159186353	-	Atu4875	-	hypothetical protein
1829	 58.10	0	2057922..2058983	+	353	15890114	-	Atu4876	-	putative oxidoreductase
1830	 55.87	-1	2059135..2059884	+	249	15890113	-	Atu4877	-	short-chain dehydrogenase
1831	 50.72	-2	2059926..2060339	+	137	15890112	-	Atu4878	-	hypothetical protein
1832	 52.90	-1	2060559..2061023	-	154	15890111	-	Atu4879	-	hypothetical protein
1833	 50.00	-2	2061076..2061357	+	93	15890110	-	Atu8043	-	hypothetical protein
1834	 55.34	-1	2061380..2062297	+	305	159186354	-	Atu4880	-	AraC family transcriptional regulator
1835	 56.72	0	2062328..2062729	-	133	159186355	-	Atu4881	-	hypothetical protein
1836	 62.84	+1	2063159..2063341	+	60	15890106	-	Atu4882	-	hypothetical protein
1837	 62.84	+1	2063733..2064176	+	147	159186356	-	Atu4884	-	hypothetical protein
1838	 47.47	-2	2064459..2064656	+	65	15890102	-	Atu8201	-	hypothetical protein
1839	 50.39	-2	2064653..2064910	+	85	15890101	-	Atu8202	-	hypothetical protein
1840	 58.97	0	2064949..2065299	+	116	159186357	-	Atu4887	-	hypothetical protein
1841	 57.73	0	2065436..2065726	+	96	15890099	-	Atu4888	-	hypothetical protein
1842	 54.85	-1	2065797..2066600	+	267	15890098	-	Atu4889	-	hypothetical protein
1843	 60.36	0	2066597..2067421	-	274	15890097	-	Atu4890	-	IS426 transposase
1844	 56.92	0	2067418..2067807	-	129	17938580	-	Atu4891	-	IS 426 transposase
1845	 55.06	-1	2068075..2070168	+	697	159186358	-	Atu4892	-	hypothetical protein
1846	 51.90	-2	2070165..2070875	+	236	15890094	-	Atu4893	-	hypothetical protein
1847	 59.35	0	2071162..2072664	+	500	159186359	tnp	Atu4894	-	transposase
1848	 49.51	-2	2073059..2073466	+	135	15890092	-	Atu4895	-	hypothetical protein
1849	 53.37	-1	2073557..2074105	-	182	159186360	-	Atu4896	-	acetyltransferase
1850	 55.31	-1	2074353..2074757	-	134	15890090	-	Atu4897	-	hypothetical protein
1851	 52.61	-2	2074865..2075113	+	82	17938587	-	Atu4898	-	hypothetical protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.