version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1752 58.23 0 1971017..1971727 - 236 159186323 bme13 Atu4795 - LuxR family transcriptional regulator 1753 55.81 -1 1971814..1972458 - 214 159186324 - Atu4796 - hypothetical protein 1754 56.46 0 1972464..1973276 - 270 15890194 rfbF Atu4797 - glucose-1-phosphate cytidylyltransferase 1755 53.60 -1 1973273..1974565 - 430 15890193 - Atu4798 - hypothetical protein 1756 57.39 0 1974870..1975397 + 175 159186325 - Atu4799 - dTDP-4-dehydrorhamnose 3,5-epimerase 1757 56.77 0 1975402..1976745 - 447 159186326 - Atu4800 - hypothetical protein 1758 60.60 0 1976759..1977829 - 356 159186327 - Atu4801 - NAD-dependent epimerase/dehydratase 1759 57.76 0 1977947..1979350 - 467 159186328 hemL Atu4802 - glutamate-1-semialdehyde 2,1-aminomutase 1760 51.58 -2 1979566..1980294 - 242 159186329 - Atu4803 - two component response regulator 1761 57.53 0 1980996..1983404 + 802 15890187 - Atu4805 - two component sensor kinase/response regulator hybrid 1762 60.62 0 1983438..1984397 - 319 15890186 pssF Atu4806 - glycosyltransferase 1763 60.65 0 1984394..1985905 - 503 159186330 pssL Atu4807 - exopolysaccharide export protein 1764 55.96 -1 1986131..1987363 - 410 15890184 amsJ Atu4808 - exopolysaccharide synthesis protein 1765 59.42 0 1987634..1988833 + 399 15890183 - Atu4809 - glycosyltransferase 1766 57.95 0 1988838..1990157 + 439 15890182 - Atu4810 - hypothetical protein 1767 59.08 0 1990412..1991557 + 381 159186331 rfe Atu4811 - undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase 1768 59.94 0 1991565..1992263 + 232 159186332 bme2 Atu4812 - hypothetical protein 1769 57.14 0 1992320..1993537 + 405 159186333 bme3 Atu4813 - hypothetical protein 1770 63.55 +1 1993541..1994149 + 202 15890178 bme4 Atu4814 - acetyltransferase 1771 59.10 0 1994113..1995288 - 391 15890177 bme6 Atu4815 - glycosyltransferase 1772 62.15 0 1995285..1996568 - 427 15890176 bme7 Atu4816 - glycosyltransferase 1773 57.66 0 1996565..1997818 - 417 159186334 bme8 Atu4817 - glycosyltransferase 1774 57.61 0 1998206..1998724 - 172 159186335 lrp Atu4818 - AsnC family transcriptional regulator 1775 58.11 0 1998786..1999451 + 221 159186366 - Atu8042 - hypothetical protein 1776 62.13 0 1999471..1999845 + 124 15890171 - Atu4819 - hypothetical protein 1777 57.83 0 1999884..2000777 - 297 15890170 - Atu4820 - hypothetical protein 1778 58.85 0 2000774..2001553 - 259 15890169 fabG Atu4821 - 3-oxoacyl-(acyl-carrier protein) reductase 1779 59.72 0 2001585..2003225 - 546 15890168 - Atu4822 - acyl-CoA synthetase 1780 59.83 0 2003222..2004391 - 389 15890167 acaB Atu4823 - acetyl-CoA acetyltransferase 1781 62.98 +1 2004388..2005254 - 288 159186336 - Atu4824 - IclR family transcriptional regulator 1782 59.19 0 2005256..2006071 - 271 15890165 - Atu4825 - dehydrogenase 1783 57.86 0 2006136..2007146 - 336 159186337 - Atu4826 - ABC transporter, substrate binding protein 1784 58.09 0 2007212..2009089 - 625 159186338 - Atu4827 - ABC transporter, membrane spanning protein 1785 61.78 0 2010184..2010879 - 231 15890161 - Atu4830 - hypothetical protein 1786 60.51 0 2010876..2011265 - 129 159186339 - Atu4831 - hypothetical protein 1787 56.27 0 2011653..2012027 + 124 17938521 - Atu4832 - hypothetical protein 1788 60.63 0 2012401..2014803 + 800 159186340 cga Atu4833 - glucoamylase 1789 61.59 0 2014841..2015845 + 334 15890158 - Atu4834 - 6-phosphogluconate dehydrogenase-like protein 1790 60.17 0 2015842..2017227 + 461 15890157 - Atu4835 - glucose-6-phosphate 1-dehydrogenase 1791 57.23 0 2017260..2017937 + 225 15890156 - Atu4836 - hypothetical protein 1792 55.20 -1 2018054..2018611 + 185 15890155 - Atu4837 - hypothetical protein 1793 54.80 -1 2018638..2019168 + 176 15890154 - Atu4838 - outer membrane lipoprotein 1794 59.51 0 2019188..2019886 + 232 15890153 csgA Atu4839 - C factor 1795 54.90 -1 2020376..2020579 - 67 15890152 - Atu4840 - hypothetical protein 1796 54.10 -1 2020610..2021341 - 243 15890151 deoR Atu4841 - DeoR family transcriptional regulator 1797 57.12 0 2021679..2022725 + 348 159186341 - Atu4842 - ABC transporter, substrate binding protein (sugar) 1798 58.13 0 2022797..2024296 + 499 159186342 - Atu4843 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1799 55.21 -1 2024310..2025287 + 325 15890148 rbsC Atu4844 - ABC transporter, membrane spanning protein (sugar) 1800 57.76 0 2025302..2026300 + 332 159186343 ydeZ Atu4845 - ABC transporter, membrane spanning protein (sugar) 1801 56.97 0 2026305..2027387 + 360 159186344 - Atu4846 - hypothetical protein 1802 59.42 0 2027412..2028350 + 312 15890145 rbsk Atu4847 - ribokinase 1803 61.88 0 2028370..2029329 + 319 159186345 deoC Atu4848 - 2-deoxyribose-5-phosphate aldolase 1804 59.10 0 2029371..2031737 + 788 159186346 - Atu4849 - NADP-dependent aldehyde dehydrogenase 1805 63.00 +1 2032206..2032778 + 190 15890141 - Atu4850 - hypothetical protein 1806 61.88 0 2033050..2033634 + 194 159186347 - Atu4851 - citrate synthase-like protein 1807 41.44 -2 2033669..2034211 - 180 15890139 - Atu4852 - hypothetical protein 1808 54.93 -1 2034379..2034966 - 195 159186348 - Atu4853 - hypothetical protein 1809 56.37 0 2035584..2035787 + 67 15890137 - Atu4854 - hypothetical protein 1810 60.19 0 2035809..2039609 - 1266 159186349 traA Atu4855 - conjugation protein 1811 53.83 -1 2040246..2041172 + 308 159186350 - Atu4856 - nucleotidyltransferase 1812 58.04 0 2041332..2041667 + 111 15890133 mobC Atu4857 - mobilization protein C 1813 57.72 0 2041664..2043328 + 554 15890132 traG Atu4858 - virulence virD4-like protein 1814 59.03 0 2043675..2044748 - 357 15890131 - Atu4859 - hypothetical protein 1815 55.56 -1 2045216..2046151 + 311 159186351 - Atu4860 - hypothetical protein 1816 59.68 0 2046717..2047475 - 252 15890129 istB Atu4861 - IS21 family transposase 1817 62.06 0 2047472..2048968 - 498 15890128 istA Atu4862 - IS21 family transposase 1818 55.63 -1 2049367..2049819 + 150 15890126 - Atu4864 - MarR family transcriptional regulator 1819 56.46 0 2050038..2050919 - 293 159186352 - Atu4865 - oxidoreductase 1820 54.58 -1 2051089..2051328 - 79 15890124 - Atu4866 - hypothetical protein 1821 59.03 0 2051470..2052006 - 178 15890123 - Atu4867 - hypothetical protein 1822 59.57 0 2052011..2053081 - 356 15890122 - Atu4868 - putative oxidoreductase 1823 58.39 0 2053277..2053699 + 140 15890121 - Atu4869 - hypothetical protein 1824 57.92 0 2053716..2054675 - 319 15890120 - Atu4870 - NADP-dependent quinone oxidoreductase 1825 55.00 -1 2054871..2055770 + 299 15890118 - Atu4872 - LysR family transcriptional regulator 1826 52.36 -2 2055897..2056469 - 190 15890117 - Atu4873 - TetR family transcriptional regulator 1827 53.33 -1 2056525..2056959 + 144 15890116 - Atu4874 - hypothetical protein 1828 57.21 0 2057365..2057766 + 133 159186353 - Atu4875 - hypothetical protein 1829 58.10 0 2057922..2058983 + 353 15890114 - Atu4876 - putative oxidoreductase 1830 55.87 -1 2059135..2059884 + 249 15890113 - Atu4877 - short-chain dehydrogenase 1831 50.72 -2 2059926..2060339 + 137 15890112 - Atu4878 - hypothetical protein 1832 52.90 -1 2060559..2061023 - 154 15890111 - Atu4879 - hypothetical protein 1833 50.00 -2 2061076..2061357 + 93 15890110 - Atu8043 - hypothetical protein 1834 55.34 -1 2061380..2062297 + 305 159186354 - Atu4880 - AraC family transcriptional regulator 1835 56.72 0 2062328..2062729 - 133 159186355 - Atu4881 - hypothetical protein 1836 62.84 +1 2063159..2063341 + 60 15890106 - Atu4882 - hypothetical protein 1837 62.84 +1 2063733..2064176 + 147 159186356 - Atu4884 - hypothetical protein 1838 47.47 -2 2064459..2064656 + 65 15890102 - Atu8201 - hypothetical protein 1839 50.39 -2 2064653..2064910 + 85 15890101 - Atu8202 - hypothetical protein 1840 58.97 0 2064949..2065299 + 116 159186357 - Atu4887 - hypothetical protein 1841 57.73 0 2065436..2065726 + 96 15890099 - Atu4888 - hypothetical protein 1842 54.85 -1 2065797..2066600 + 267 15890098 - Atu4889 - hypothetical protein 1843 60.36 0 2066597..2067421 - 274 15890097 - Atu4890 - IS426 transposase 1844 56.92 0 2067418..2067807 - 129 17938580 - Atu4891 - IS 426 transposase 1845 55.06 -1 2068075..2070168 + 697 159186358 - Atu4892 - hypothetical protein 1846 51.90 -2 2070165..2070875 + 236 15890094 - Atu4893 - hypothetical protein 1847 59.35 0 2071162..2072664 + 500 159186359 tnp Atu4894 - transposase 1848 49.51 -2 2073059..2073466 + 135 15890092 - Atu4895 - hypothetical protein 1849 53.37 -1 2073557..2074105 - 182 159186360 - Atu4896 - acetyltransferase 1850 55.31 -1 2074353..2074757 - 134 15890090 - Atu4897 - hypothetical protein 1851 52.61 -2 2074865..2075113 + 82 17938587 - Atu4898 - hypothetical protein 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.