version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1721 56.17 -1 1934620..1936143 + 507 15890228 - Atu4765 - hypothetical protein 1722 59.86 0 1936189..1936614 - 141 15890227 - Atu4766 - hypothetical protein 1723 63.16 +1 1936770..1937168 - 132 159186310 - Atu4767 - hypothetical protein 1724 60.96 0 1937229..1937666 - 145 15890225 - Atu4768 - hypothetical protein 1725 61.39 0 1937805..1938524 - 239 159186311 - Atu4769 - hypothetical protein 1726 63.34 +1 1938707..1939819 - 370 15890223 - Atu4770 - hypothetical protein 1727 61.22 0 1939931..1941178 - 415 15890222 - Atu4771 - oxalate decarboxylase 1728 63.66 +1 1941180..1941644 - 154 159186312 - Atu4772 - hypothetical protein 1729 59.47 0 1941969..1942343 - 124 15890220 - Atu4773 - two component response regulator 1730 58.60 0 1942408..1943064 - 218 15890219 nodW Atu4774 - two component response regulator 1731 59.52 0 1943057..1944637 - 526 15890218 - Atu4775 - two component sensor kinase 1732 60.00 0 1944898..1947192 - 764 15890217 fdhF Atu4776 - formate dehydrogenase alpha subunit 1733 59.92 0 1947602..1948120 + 172 159186313 - Atu4777 - hypothetical protein 1734 60.04 0 1948140..1949120 + 326 15890215 cpo Atu4778 - non-heme chloroperoxidase 1735 54.39 -1 1949193..1949591 - 132 159186314 - Atu4779 - hypothetical protein 1736 60.42 0 1949708..1950796 + 362 159186315 - Atu4780 - hypothetical protein 1737 61.70 0 1950972..1953104 - 710 15890211 - Atu4781 - two component sensor kinase 1738 59.97 0 1953101..1953847 - 248 15890210 drrA Atu4782 - two component response regulator 1739 60.45 0 1954065..1955093 + 342 15890209 afuA Atu4783 - ABC transporter, substrate binding protein (iron) 1740 58.48 0 1955192..1956217 + 341 159186316 afuA Atu4784 - ABC transporter, substrate binding protein (iron) 1741 60.44 0 1956296..1958527 + 743 159186317 afuB Atu4785 - ABC transporter, membrane spanning protein (iron) 1742 62.71 0 1958524..1959585 + 353 15890206 afuC Atu4786 - ABC transporter, nucleotide binding/ATPase protein (iron) 1743 60.62 0 1959613..1960422 + 269 159186318 - Atu4787 - inositol monophosphatase family protein 1744 56.30 0 1960559..1961638 - 359 159186319 - Atu4788 - hypothetical protein 1745 56.49 0 1961955..1963025 + 356 159186320 gmd Atu4789 - GDP-mannose 4,6-dehydratase 1746 54.59 -1 1963036..1964004 + 322 159186321 fcl Atu4790 - GDP-fucose synthetase 1747 59.74 0 1964001..1965950 + 649 159186370 - Atu8097 - hypothetical protein 1748 57.46 0 1965987..1966475 + 162 159186322 - Atu4791 - hypothetical protein 1749 55.56 -1 1967017..1967313 - 98 15890199 - Atu4792 - hypothetical protein 1750 58.57 0 1967537..1968796 - 419 15890198 bme11 Atu4793 - exopolysaccharide production protein 1751 58.81 0 1968800..1970962 - 720 15890197 bme12 Atu4794 - polysaccharide biosynthesis protein 1752 58.23 0 1971017..1971727 - 236 159186323 bme13 Atu4795 - LuxR family transcriptional regulator 1753 55.81 -1 1971814..1972458 - 214 159186324 - Atu4796 - hypothetical protein 1754 56.46 0 1972464..1973276 - 270 15890194 rfbF Atu4797 - glucose-1-phosphate cytidylyltransferase 1755 53.60 -1 1973273..1974565 - 430 15890193 - Atu4798 - hypothetical protein 1756 57.39 0 1974870..1975397 + 175 159186325 - Atu4799 - dTDP-4-dehydrorhamnose 3,5-epimerase 1757 56.77 0 1975402..1976745 - 447 159186326 - Atu4800 - hypothetical protein 1758 60.60 0 1976759..1977829 - 356 159186327 - Atu4801 - NAD-dependent epimerase/dehydratase 1759 57.76 0 1977947..1979350 - 467 159186328 hemL Atu4802 - glutamate-1-semialdehyde 2,1-aminomutase 1760 51.58 -2 1979566..1980294 - 242 159186329 - Atu4803 - two component response regulator 1761 57.53 0 1980996..1983404 + 802 15890187 - Atu4805 - two component sensor kinase/response regulator hybrid 1762 60.62 0 1983438..1984397 - 319 15890186 pssF Atu4806 - glycosyltransferase 1763 60.65 0 1984394..1985905 - 503 159186330 pssL Atu4807 - exopolysaccharide export protein 1764 55.96 -1 1986131..1987363 - 410 15890184 amsJ Atu4808 - exopolysaccharide synthesis protein 1765 59.42 0 1987634..1988833 + 399 15890183 - Atu4809 - glycosyltransferase 1766 57.95 0 1988838..1990157 + 439 15890182 - Atu4810 - hypothetical protein 1767 59.08 0 1990412..1991557 + 381 159186331 rfe Atu4811 - undecaprenyl-phosphate alpha N-acetylglucosaminyltransferase 1768 59.94 0 1991565..1992263 + 232 159186332 bme2 Atu4812 - hypothetical protein 1769 57.14 0 1992320..1993537 + 405 159186333 bme3 Atu4813 - hypothetical protein 1770 63.55 +1 1993541..1994149 + 202 15890178 bme4 Atu4814 - acetyltransferase 1771 59.10 0 1994113..1995288 - 391 15890177 bme6 Atu4815 - glycosyltransferase 1772 62.15 0 1995285..1996568 - 427 15890176 bme7 Atu4816 - glycosyltransferase 1773 57.66 0 1996565..1997818 - 417 159186334 bme8 Atu4817 - glycosyltransferase 1774 57.61 0 1998206..1998724 - 172 159186335 lrp Atu4818 - AsnC family transcriptional regulator 1775 58.11 0 1998786..1999451 + 221 159186366 - Atu8042 - hypothetical protein 1776 62.13 0 1999471..1999845 + 124 15890171 - Atu4819 - hypothetical protein 1777 57.83 0 1999884..2000777 - 297 15890170 - Atu4820 - hypothetical protein 1778 58.85 0 2000774..2001553 - 259 15890169 fabG Atu4821 - 3-oxoacyl-(acyl-carrier protein) reductase 1779 59.72 0 2001585..2003225 - 546 15890168 - Atu4822 - acyl-CoA synthetase 1780 59.83 0 2003222..2004391 - 389 15890167 acaB Atu4823 - acetyl-CoA acetyltransferase 1781 62.98 +1 2004388..2005254 - 288 159186336 - Atu4824 - IclR family transcriptional regulator 1782 59.19 0 2005256..2006071 - 271 15890165 - Atu4825 - dehydrogenase 1783 57.86 0 2006136..2007146 - 336 159186337 - Atu4826 - ABC transporter, substrate binding protein 1784 58.09 0 2007212..2009089 - 625 159186338 - Atu4827 - ABC transporter, membrane spanning protein 1785 61.78 0 2010184..2010879 - 231 15890161 - Atu4830 - hypothetical protein 1786 60.51 0 2010876..2011265 - 129 159186339 - Atu4831 - hypothetical protein 1787 56.27 0 2011653..2012027 + 124 17938521 - Atu4832 - hypothetical protein 1788 60.63 0 2012401..2014803 + 800 159186340 cga Atu4833 - glucoamylase 1789 61.59 0 2014841..2015845 + 334 15890158 - Atu4834 - 6-phosphogluconate dehydrogenase-like protein 1790 60.17 0 2015842..2017227 + 461 15890157 - Atu4835 - glucose-6-phosphate 1-dehydrogenase 1791 57.23 0 2017260..2017937 + 225 15890156 - Atu4836 - hypothetical protein 1792 55.20 -1 2018054..2018611 + 185 15890155 - Atu4837 - hypothetical protein 1793 54.80 -1 2018638..2019168 + 176 15890154 - Atu4838 - outer membrane lipoprotein 1794 59.51 0 2019188..2019886 + 232 15890153 csgA Atu4839 - C factor 1795 54.90 -1 2020376..2020579 - 67 15890152 - Atu4840 - hypothetical protein 1796 54.10 -1 2020610..2021341 - 243 15890151 deoR Atu4841 - DeoR family transcriptional regulator 1797 57.12 0 2021679..2022725 + 348 159186341 - Atu4842 - ABC transporter, substrate binding protein (sugar) 1798 58.13 0 2022797..2024296 + 499 159186342 - Atu4843 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1799 55.21 -1 2024310..2025287 + 325 15890148 rbsC Atu4844 - ABC transporter, membrane spanning protein (sugar) 1800 57.76 0 2025302..2026300 + 332 159186343 ydeZ Atu4845 - ABC transporter, membrane spanning protein (sugar) 1801 56.97 0 2026305..2027387 + 360 159186344 - Atu4846 - hypothetical protein 1802 59.42 0 2027412..2028350 + 312 15890145 rbsk Atu4847 - ribokinase 1803 61.88 0 2028370..2029329 + 319 159186345 deoC Atu4848 - 2-deoxyribose-5-phosphate aldolase 1804 59.10 0 2029371..2031737 + 788 159186346 - Atu4849 - NADP-dependent aldehyde dehydrogenase 1805 63.00 +1 2032206..2032778 + 190 15890141 - Atu4850 - hypothetical protein 1806 61.88 0 2033050..2033634 + 194 159186347 - Atu4851 - citrate synthase-like protein 1807 41.44 -2 2033669..2034211 - 180 15890139 - Atu4852 - hypothetical protein 1808 54.93 -1 2034379..2034966 - 195 159186348 - Atu4853 - hypothetical protein 1809 56.37 0 2035584..2035787 + 67 15890137 - Atu4854 - hypothetical protein 1810 60.19 0 2035809..2039609 - 1266 159186349 traA Atu4855 - conjugation protein 1811 53.83 -1 2040246..2041172 + 308 159186350 - Atu4856 - nucleotidyltransferase 1812 58.04 0 2041332..2041667 + 111 15890133 mobC Atu4857 - mobilization protein C 1813 57.72 0 2041664..2043328 + 554 15890132 traG Atu4858 - virulence virD4-like protein 1814 59.03 0 2043675..2044748 - 357 15890131 - Atu4859 - hypothetical protein 1815 55.56 -1 2045216..2046151 + 311 159186351 - Atu4860 - hypothetical protein 1816 59.68 0 2046717..2047475 - 252 15890129 istB Atu4861 - IS21 family transposase 1817 62.06 0 2047472..2048968 - 498 15890128 istA Atu4862 - IS21 family transposase 1818 55.63 -1 2049367..2049819 + 150 15890126 - Atu4864 - MarR family transcriptional regulator 1819 56.46 0 2050038..2050919 - 293 159186352 - Atu4865 - oxidoreductase 1820 54.58 -1 2051089..2051328 - 79 15890124 - Atu4866 - hypothetical protein 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0