IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1656	 60.84	0	1860505..1861998	+	497	159186280	trzA	Atu4699	-	N-ethylammeline chlorohydrolase
1657	 62.15	0	1862000..1862974	+	324	159186281	-	Atu4700	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1658	 61.39	0	1862971..1863993	+	340	159186282	-	Atu4701	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1659	 58.70	0	1864002..1864679	-	225	15890291	-	Atu4702	-	GntR family transcriptional regulator
1660	 57.30	0	1864809..1865438	+	209	159186283	-	Atu4703	-	hypothetical protein
1661	 63.07	+1	1865460..1866182	+	240	159186284	huy	Atu4704	-	hydantoin racemase
1662	 57.90	0	1866284..1867207	+	307	15890288	-	Atu4705	-	LysR family transcriptional regulator
1663	 59.17	0	1867324..1867803	+	159	159186285	nuoE	Atu4706	-	formate dehydrogenase subunit gamma
1664	 61.34	0	1867800..1869356	+	518	15890286	nuoF	Atu4707	-	NADH ubiquinone oxidoreductase chain F
1665	 60.91	0	1869361..1872243	+	960	159186286	fdhF	Atu4708	-	formate dehydrogenase alpha subunit
1666	 61.16	0	1872318..1872662	+	114	15890284	fdsD	Atu4709	-	NAD-dependent formate dehydrogenase delta subunit
1667	 62.79	+1	1872778..1874430	+	550	159186287	-	Atu4710	-	MFS permease
1668	 60.85	0	1874533..1875891	-	452	159186288	-	Atu4711	-	two component sensor kinase
1669	 60.18	0	1875888..1876550	-	220	159186289	-	Atu4712	-	two component response regulator
1670	 61.05	0	1876684..1877253	+	189	15890280	-	Atu4713	-	hypothetical protein
1671	 61.93	0	1877357..1877863	-	168	15890279	-	Atu4714	-	hypothetical protein
1672	 58.62	0	1877860..1878207	-	115	15890278	-	Atu8199	-	hypothetical protein
1673	 55.56	-1	1878215..1878394	-	59	15890277	-	Atu8096	-	hypothetical protein
1674	 60.11	0	1878534..1880012	-	492	15890276	-	Atu4716	-	LuxR family transcriptional regulator
1675	 60.31	0	1880247..1881032	+	261	15890275	-	Atu4718	-	GntR family transcriptional regulator
1676	 58.38	0	1881113..1882621	+	502	15890274	dppA	Atu4719	-	ABC transporter, substrate binding protein (dipeptide)
1677	 58.23	0	1882689..1883636	+	315	159186290	dppB	Atu4720	-	ABC transporter, membrane spanning protein (dipeptide)
1678	 62.83	+1	1883713..1884519	+	268	159186291	dppC	Atu4721	-	ABC transporter, membrane spanning protein (dipeptide)
1679	 63.64	+1	1884541..1886325	+	594	15890271	ggt	Atu4722	-	gamma-glutamyltranspeptidase
1680	 59.60	0	1886330..1888141	+	603	159186292	-	Atu4723	-	ABC transporter, nucleotide binding/ATPase protein
1681	 53.92	-1	1888212..1888415	-	67	159186293	-	Atu4724	-	hypothetical protein
1682	 64.80	+1	1888598..1888918	+	106	15890268	-	Atu8200	-	hypothetical protein
1683	 60.92	0	1889112..1889807	+	231	159186294	sodBIII	Atu4726	-	superoxide dismutase
1684	 60.71	0	1889922..1890911	+	329	15890266	-	Atu4727	-	hypothetical protein
1685	 61.95	0	1891371..1893173	+	600	15890265	exsA	Atu4728	-	ABC transporter, nucleotide binding/ATPase protein
1686	 61.42	0	1893354..1894955	+	533	159186295	-	Atu4729	-	ABC transporter, nucleotide binding/ATPase protein
1687	 63.30	+1	1894949..1895899	-	316	15890262	-	Atu4730	-	hypothetical protein
1688	 60.60	0	1895896..1898334	-	812	15890261	-	Atu4731	-	fimbrial usher protein
1689	 61.79	0	1898306..1899022	-	238	15890260	-	Atu4732	-	fimbrial chaperone
1690	 61.24	0	1899044..1899541	-	165	159186296	-	Atu4733	-	hypothetical protein
1691	 58.82	0	1899905..1902694	+	929	159186297	acnB	Atu4734	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1692	 60.91	0	1903103..1905046	+	647	159186298	-	Atu4736	-	methyl-accepting chemotaxis protein
1693	 54.64	-1	1905245..1905427	+	60	15890256	-	Atu4737	-	hypothetical protein
1694	 60.32	0	1905632..1906261	+	209	15890255	cat	Atu4738	-	chloramphenicol acetyltransferase
1695	 60.23	0	1906315..1908117	-	600	159186299	-	Atu4739	-	flavin-containing monooxygenase
1696	 61.73	0	1908230..1909303	-	357	159186300	-	Atu4740	-	zinc-binding dehydrogenase
1697	 63.00	+1	1909460..1911343	-	627	15890252	acoR	Atu4741	-	transcriptional regulator
1698	 62.65	0	1911467..1911790	-	107	159186301	-	Atu4742	-	hypothetical protein
1699	 58.24	0	1911887..1912966	-	359	15890250	-	Atu4743	-	LacI family transcription regulator
1700	 60.70	0	1913329..1914183	+	284	159186302	-	Atu4744	-	ABC transporter, substrate binding protein (sugar)
1701	 59.15	0	1914301..1915791	+	496	159186303	-	Atu4745	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1702	 59.88	0	1915784..1916800	+	338	15890247	-	Atu4746	-	ABC transporter, membrane spanning protein (sugar)
1703	 61.55	0	1916797..1917792	+	331	15890246	-	Atu4747	-	ABC transporter, membrane spanning protein (sugar)
1704	 60.21	0	1917794..1918645	+	283	159186304	-	Atu4748	-	D-tagatose 3-epimerase
1705	 59.28	0	1918683..1919345	+	220	159186305	-	Atu4749	-	putative fructose transport system kinase
1706	 56.90	0	1919412..1920281	+	289	15890243	dpe	Atu4750	-	D-psicose 3-epimerase
1707	 56.73	0	1920431..1921426	+	331	159186306	-	Atu4751	-	hypothetical protein
1708	 56.67	0	1921454..1922233	-	259	15890241	-	Atu4752	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1709	 58.59	0	1922230..1922922	-	230	15890240	-	Atu4753	-	ABC transporter, membrane spanning protein (amino acid)
1710	 58.86	0	1922935..1923600	-	221	15890239	-	Atu4754	-	ABC transporter, membrane spanning protein (amino acid)
1711	 59.27	0	1923661..1924512	-	283	15890238	-	Atu4755	-	ABC transporter, substrate binding protein (amino acid)
1712	 61.34	0	1924573..1925586	-	337	15890237	-	Atu4756	-	hypothetical protein
1713	 59.03	0	1925590..1926768	-	392	15890236	-	Atu4757	-	Xaa-Pro dipeptidase
1714	 61.93	0	1926765..1927778	-	337	15890235	arcB	Atu4758	-	ornithine cyclodeaminase
1715	 62.15	0	1927775..1928770	-	331	159186307	tdcB	Atu4759	-	threonine dehydratase
1716	 61.01	0	1928862..1930310	-	482	15890233	-	Atu4760	-	GntR family transcriptional regulator
1717	 59.33	0	1930471..1931874	-	467	159186308	bioA	Atu4761	-	hypothetical protein
1718	 60.65	0	1931888..1933366	-	492	159186309	gabD	Atu4762	-	succinate semialdehyde dehydrogenase
1719	 54.70	-1	1933488..1933955	+	155	15890230	-	Atu4763	-	AsnC family transcriptional regulator
1720	 58.11	0	1934015..1934575	+	186	15890229	-	Atu4764	-	acetyltransferase
1721	 56.17	-1	1934620..1936143	+	507	15890228	-	Atu4765	-	hypothetical protein
1722	 59.86	0	1936189..1936614	-	141	15890227	-	Atu4766	-	hypothetical protein
1723	 63.16	+1	1936770..1937168	-	132	159186310	-	Atu4767	-	hypothetical protein
1724	 60.96	0	1937229..1937666	-	145	15890225	-	Atu4768	-	hypothetical protein
1725	 61.39	0	1937805..1938524	-	239	159186311	-	Atu4769	-	hypothetical protein
1726	 63.34	+1	1938707..1939819	-	370	15890223	-	Atu4770	-	hypothetical protein
1727	 61.22	0	1939931..1941178	-	415	15890222	-	Atu4771	-	oxalate decarboxylase
1728	 63.66	+1	1941180..1941644	-	154	159186312	-	Atu4772	-	hypothetical protein
1729	 59.47	0	1941969..1942343	-	124	15890220	-	Atu4773	-	two component response regulator
1730	 58.60	0	1942408..1943064	-	218	15890219	nodW	Atu4774	-	two component response regulator
1731	 59.52	0	1943057..1944637	-	526	15890218	-	Atu4775	-	two component sensor kinase
1732	 60.00	0	1944898..1947192	-	764	15890217	fdhF	Atu4776	-	formate dehydrogenase alpha subunit
1733	 59.92	0	1947602..1948120	+	172	159186313	-	Atu4777	-	hypothetical protein
1734	 60.04	0	1948140..1949120	+	326	15890215	cpo	Atu4778	-	non-heme chloroperoxidase
1735	 54.39	-1	1949193..1949591	-	132	159186314	-	Atu4779	-	hypothetical protein
1736	 60.42	0	1949708..1950796	+	362	159186315	-	Atu4780	-	hypothetical protein
1737	 61.70	0	1950972..1953104	-	710	15890211	-	Atu4781	-	two component sensor kinase
1738	 59.97	0	1953101..1953847	-	248	15890210	drrA	Atu4782	-	two component response regulator
1739	 60.45	0	1954065..1955093	+	342	15890209	afuA	Atu4783	-	ABC transporter, substrate binding protein (iron)
1740	 58.48	0	1955192..1956217	+	341	159186316	afuA	Atu4784	-	ABC transporter, substrate binding protein (iron)
1741	 60.44	0	1956296..1958527	+	743	159186317	afuB	Atu4785	-	ABC transporter, membrane spanning protein (iron)
1742	 62.71	0	1958524..1959585	+	353	15890206	afuC	Atu4786	-	ABC transporter, nucleotide binding/ATPase protein (iron)
1743	 60.62	0	1959613..1960422	+	269	159186318	-	Atu4787	-	inositol monophosphatase family protein
1744	 56.30	0	1960559..1961638	-	359	159186319	-	Atu4788	-	hypothetical protein
1745	 56.49	0	1961955..1963025	+	356	159186320	gmd	Atu4789	-	GDP-mannose 4,6-dehydratase
1746	 54.59	-1	1963036..1964004	+	322	159186321	fcl	Atu4790	-	GDP-fucose synthetase
1747	 59.74	0	1964001..1965950	+	649	159186370	-	Atu8097	-	hypothetical protein
1748	 57.46	0	1965987..1966475	+	162	159186322	-	Atu4791	-	hypothetical protein
1749	 55.56	-1	1967017..1967313	-	98	15890199	-	Atu4792	-	hypothetical protein
1750	 58.57	0	1967537..1968796	-	419	15890198	bme11	Atu4793	-	exopolysaccharide production protein
1751	 58.81	0	1968800..1970962	-	720	15890197	bme12	Atu4794	-	polysaccharide biosynthesis protein
1752	 58.23	0	1971017..1971727	-	236	159186323	bme13	Atu4795	-	LuxR family transcriptional regulator
1753	 55.81	-1	1971814..1972458	-	214	159186324	-	Atu4796	-	hypothetical protein
1754	 56.46	0	1972464..1973276	-	270	15890194	rfbF	Atu4797	-	glucose-1-phosphate cytidylyltransferase
1755	 53.60	-1	1973273..1974565	-	430	15890193	-	Atu4798	-	hypothetical protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.