IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1611	 57.22	0	1807112..1808053	-	313	15890337	-	Atu4653	-	ABC transporter, membrane spanning protein (sugar)
1612	 58.37	0	1808071..1809336	-	421	15890336	-	Atu4654	-	ABC transporter, substrate binding protein (sugar)
1613	 62.92	+1	1809583..1810809	+	408	159186259	xylR	Atu4655	-	ROK family transcriptional regulator
1614	 61.96	0	1810829..1813231	+	800	159186260	-	Atu4656	-	hypothetical protein
1615	 59.32	0	1813228..1814139	+	303	15890333	-	Atu4657	-	hypothetical protein
1616	 56.74	0	1814149..1814682	-	177	159186261	-	Atu4658	-	hypothetical protein
1617	 59.68	0	1814687..1815574	-	295	15890331	agpT	Atu4659	-	AraC family transcriptional regulator
1618	 58.49	0	1815772..1817238	+	488	159186262	melA	Atu4660	-	alpha-galactosidase
1619	 59.00	0	1817343..1819430	+	695	159186263	agpA	Atu4661	-	ABC transporter, substrate binding protein (alpha-galactoside)
1620	 60.12	0	1819574..1820581	+	335	15890328	-	Atu4662	-	ABC transporter, membrane spanning protein (oligopeptide )
1621	 59.98	0	1820583..1821719	+	378	159186264	-	Atu4663	-	ABC transporter, membrane spanning protein (oligopeptide)
1622	 59.65	0	1821733..1823400	+	555	159186265	-	Atu4664	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1623	 59.02	0	1823423..1824796	+	457	159186266	melA	Atu4665	-	alpha-galactosidase
1624	 61.03	0	1825088..1826152	+	354	15890324	-	Atu4666	-	HlyD family secretion protein
1625	 58.82	0	1826164..1828941	+	925	159186267	-	Atu4667	-	ABC transporter, nucleotide binding/ATPase protein
1626	 58.27	0	1828938..1830056	+	372	15890322	-	Atu4668	-	ABC transporter, membrane spanning protein
1627	 57.26	0	1830326..1830793	+	155	159186268	-	Atu4669	-	hypothetical protein
1628	 57.61	0	1831052..1831294	-	80	17938359	-	Atu4670	-	hypothetical protein
1629	 58.56	0	1831642..1832085	-	147	159186269	-	Atu4671	-	response regulator
1630	 62.51	0	1832465..1833427	+	320	15890319	ftsZ1	Atu4673	-	cell division protein FtsZ
1631	 59.51	0	1833717..1834415	+	232	159186270	-	Atu4674	-	GntR family transcriptional regulator
1632	 60.04	0	1834525..1835490	+	321	15890317	dapA	Atu4675	-	dihydrodipicolinate synthase
1633	 63.29	+1	1835558..1836595	-	345	159186271	-	Atu4676	-	putative malate dehydrogenase
1634	 46.36	-2	1836657..1836917	+	86	17938366	-	Atu4677	-	hypothetical protein
1635	 59.48	0	1836914..1837720	+	268	15890315	-	Atu4678	-	ABC transporter, substrate binding protein (amino acid)
1636	 57.36	0	1837793..1838458	+	221	15890314	-	Atu4679	-	ABC transporter, membrane spanning protein (amino acid)
1637	 61.77	0	1838471..1839124	+	217	15890313	-	Atu4680	-	ABC transporter, membrane spanning protein (amino acid)
1638	 58.37	0	1839117..1839839	+	240	15890312	-	Atu4681	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1639	 63.53	+1	1839839..1841080	+	413	15890311	dadA	Atu4682	-	D-amino acid dehydrogenase, small subunit
1640	 64.04	+1	1841190..1842899	+	569	15890310	-	Atu4683	-	hypothetical protein
1641	 63.07	+1	1842910..1843938	+	342	15890309	-	Atu4684	-	hypothetical protein
1642	 59.98	0	1844086..1845072	-	328	159186272	-	Atu4685	-	LacI family transcription regulator
1643	 59.81	0	1845265..1845585	-	106	159186273	-	Atu4686	-	hypothetical protein
1644	 58.96	0	1845881..1846684	+	267	159186274	-	Atu4687	-	ABC transporter, substrate binding protein (amino acid)
1645	 57.59	0	1846751..1847455	+	234	15890305	-	Atu4688	-	ABC transporter, membrane spanning protein (amino acid)
1646	 58.18	0	1847452..1848111	+	219	15890304	-	Atu4689	-	ABC transporter, membrane spanning protein (amino acid)
1647	 60.39	0	1848155..1848823	+	222	159186275	-	Atu4690	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1648	 62.71	0	1848847..1849782	+	311	15890302	-	Atu4691	-	2-hydroxyacid dehydrogenase
1649	 57.66	0	1850008..1852182	+	724	159186276	-	Atu4692	-	GGDEF family protein
1650	 57.30	0	1852650..1853717	+	355	15890300	-	Atu4693	-	outer membrane protein
1651	 59.55	0	1853909..1855426	-	505	15890299	-	Atu4694	-	chlorohydrolase
1652	 57.41	0	1855589..1857154	+	521	159186277	-	Atu4695	-	ABC transporter, substrate binding protein (oligopeptide)
1653	 58.72	0	1857372..1858340	+	322	159186278	-	Atu4696	-	ABC transporter, membrane spanning protein (oligopeptide)
1654	 60.86	0	1858359..1859306	+	315	15890296	-	Atu4697	-	ABC transporter, membrane spanning protein (oligopeptide)
1655	 61.64	0	1859312..1860505	+	397	159186279	-	Atu4698	-	cytosine deaminase
1656	 60.84	0	1860505..1861998	+	497	159186280	trzA	Atu4699	-	N-ethylammeline chlorohydrolase
1657	 62.15	0	1862000..1862974	+	324	159186281	-	Atu4700	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1658	 61.39	0	1862971..1863993	+	340	159186282	-	Atu4701	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1659	 58.70	0	1864002..1864679	-	225	15890291	-	Atu4702	-	GntR family transcriptional regulator
1660	 57.30	0	1864809..1865438	+	209	159186283	-	Atu4703	-	hypothetical protein
1661	 63.07	+1	1865460..1866182	+	240	159186284	huy	Atu4704	-	hydantoin racemase
1662	 57.90	0	1866284..1867207	+	307	15890288	-	Atu4705	-	LysR family transcriptional regulator
1663	 59.17	0	1867324..1867803	+	159	159186285	nuoE	Atu4706	-	formate dehydrogenase subunit gamma
1664	 61.34	0	1867800..1869356	+	518	15890286	nuoF	Atu4707	-	NADH ubiquinone oxidoreductase chain F
1665	 60.91	0	1869361..1872243	+	960	159186286	fdhF	Atu4708	-	formate dehydrogenase alpha subunit
1666	 61.16	0	1872318..1872662	+	114	15890284	fdsD	Atu4709	-	NAD-dependent formate dehydrogenase delta subunit
1667	 62.79	+1	1872778..1874430	+	550	159186287	-	Atu4710	-	MFS permease
1668	 60.85	0	1874533..1875891	-	452	159186288	-	Atu4711	-	two component sensor kinase
1669	 60.18	0	1875888..1876550	-	220	159186289	-	Atu4712	-	two component response regulator
1670	 61.05	0	1876684..1877253	+	189	15890280	-	Atu4713	-	hypothetical protein
1671	 61.93	0	1877357..1877863	-	168	15890279	-	Atu4714	-	hypothetical protein
1672	 58.62	0	1877860..1878207	-	115	15890278	-	Atu8199	-	hypothetical protein
1673	 55.56	-1	1878215..1878394	-	59	15890277	-	Atu8096	-	hypothetical protein
1674	 60.11	0	1878534..1880012	-	492	15890276	-	Atu4716	-	LuxR family transcriptional regulator
1675	 60.31	0	1880247..1881032	+	261	15890275	-	Atu4718	-	GntR family transcriptional regulator
1676	 58.38	0	1881113..1882621	+	502	15890274	dppA	Atu4719	-	ABC transporter, substrate binding protein (dipeptide)
1677	 58.23	0	1882689..1883636	+	315	159186290	dppB	Atu4720	-	ABC transporter, membrane spanning protein (dipeptide)
1678	 62.83	+1	1883713..1884519	+	268	159186291	dppC	Atu4721	-	ABC transporter, membrane spanning protein (dipeptide)
1679	 63.64	+1	1884541..1886325	+	594	15890271	ggt	Atu4722	-	gamma-glutamyltranspeptidase
1680	 59.60	0	1886330..1888141	+	603	159186292	-	Atu4723	-	ABC transporter, nucleotide binding/ATPase protein
1681	 53.92	-1	1888212..1888415	-	67	159186293	-	Atu4724	-	hypothetical protein
1682	 64.80	+1	1888598..1888918	+	106	15890268	-	Atu8200	-	hypothetical protein
1683	 60.92	0	1889112..1889807	+	231	159186294	sodBIII	Atu4726	-	superoxide dismutase
1684	 60.71	0	1889922..1890911	+	329	15890266	-	Atu4727	-	hypothetical protein
1685	 61.95	0	1891371..1893173	+	600	15890265	exsA	Atu4728	-	ABC transporter, nucleotide binding/ATPase protein
1686	 61.42	0	1893354..1894955	+	533	159186295	-	Atu4729	-	ABC transporter, nucleotide binding/ATPase protein
1687	 63.30	+1	1894949..1895899	-	316	15890262	-	Atu4730	-	hypothetical protein
1688	 60.60	0	1895896..1898334	-	812	15890261	-	Atu4731	-	fimbrial usher protein
1689	 61.79	0	1898306..1899022	-	238	15890260	-	Atu4732	-	fimbrial chaperone
1690	 61.24	0	1899044..1899541	-	165	159186296	-	Atu4733	-	hypothetical protein
1691	 58.82	0	1899905..1902694	+	929	159186297	acnB	Atu4734	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1692	 60.91	0	1903103..1905046	+	647	159186298	-	Atu4736	-	methyl-accepting chemotaxis protein
1693	 54.64	-1	1905245..1905427	+	60	15890256	-	Atu4737	-	hypothetical protein
1694	 60.32	0	1905632..1906261	+	209	15890255	cat	Atu4738	-	chloramphenicol acetyltransferase
1695	 60.23	0	1906315..1908117	-	600	159186299	-	Atu4739	-	flavin-containing monooxygenase
1696	 61.73	0	1908230..1909303	-	357	159186300	-	Atu4740	-	zinc-binding dehydrogenase
1697	 63.00	+1	1909460..1911343	-	627	15890252	acoR	Atu4741	-	transcriptional regulator
1698	 62.65	0	1911467..1911790	-	107	159186301	-	Atu4742	-	hypothetical protein
1699	 58.24	0	1911887..1912966	-	359	15890250	-	Atu4743	-	LacI family transcription regulator
1700	 60.70	0	1913329..1914183	+	284	159186302	-	Atu4744	-	ABC transporter, substrate binding protein (sugar)
1701	 59.15	0	1914301..1915791	+	496	159186303	-	Atu4745	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1702	 59.88	0	1915784..1916800	+	338	15890247	-	Atu4746	-	ABC transporter, membrane spanning protein (sugar)
1703	 61.55	0	1916797..1917792	+	331	15890246	-	Atu4747	-	ABC transporter, membrane spanning protein (sugar)
1704	 60.21	0	1917794..1918645	+	283	159186304	-	Atu4748	-	D-tagatose 3-epimerase
1705	 59.28	0	1918683..1919345	+	220	159186305	-	Atu4749	-	putative fructose transport system kinase
1706	 56.90	0	1919412..1920281	+	289	15890243	dpe	Atu4750	-	D-psicose 3-epimerase
1707	 56.73	0	1920431..1921426	+	331	159186306	-	Atu4751	-	hypothetical protein
1708	 56.67	0	1921454..1922233	-	259	15890241	-	Atu4752	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1709	 58.59	0	1922230..1922922	-	230	15890240	-	Atu4753	-	ABC transporter, membrane spanning protein (amino acid)
1710	 58.86	0	1922935..1923600	-	221	15890239	-	Atu4754	-	ABC transporter, membrane spanning protein (amino acid)
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.