version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1548 57.09 0 1736276..1736557 + 93 159186235 - Atu4589 - transmembrane transport protein 1549 61.99 0 1736606..1737652 - 348 159186236 - Atu4590 - putative oxidoreductase 1550 61.81 0 1737812..1738717 + 301 15890397 - Atu4591 - LysR family transcriptional regulator 1551 59.87 0 1738816..1739610 - 264 159186237 - Atu4592 - hypothetical protein 1552 56.54 0 1739625..1740473 - 282 15890395 hpaG Atu4593 - 2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase 1553 59.97 0 1740482..1741168 - 228 15890394 - Atu4594 - hypothetical protein 1554 56.93 0 1741177..1741926 - 249 159186238 - Atu4595 - dehydrogenase 1555 55.35 -1 1741987..1742976 - 329 15890392 - Atu4596 - hypothetical protein 1556 56.59 0 1743009..1743812 - 267 15890391 - Atu4597 - ABC transporter, membrane spanning protein 1557 58.64 0 1743946..1744755 + 269 15890390 - Atu4598 - ABC transporter, nucleotide binding/ATPase protein 1558 62.91 +1 1744870..1745640 + 256 159186239 - Atu4599 - IclR family transcriptional regulator 1559 53.68 -1 1745721..1747484 - 587 15890388 - Atu4600 - ABC transporter, nucleotide binding/ATPase protein 1560 60.27 0 1747960..1748787 - 275 15890387 - Atu4601 - IS426 transposase 1561 56.92 0 1748784..1749173 - 129 159186240 - Atu4602 - IS426 transposase 1562 58.58 0 1749248..1749556 + 102 15890385 - Atu4603 - IS3 family transposase 1563 60.65 0 1749572..1750501 - 309 15890384 - Atu4604 - IS3 family transposase 1564 55.06 -1 1750495..1750761 - 88 15890383 - Atu4605 - IS3 family transposase 1565 42.52 -2 1751061..1752671 - 536 159186241 - Atu4606 - hypothetical protein 1566 52.01 -2 1752982..1754100 - 372 15890381 nodX Atu4607 - sugar acetylase 1567 52.48 -2 1754100..1755953 - 617 15890380 - Atu4608 - hypothetical protein 1568 51.47 -2 1755953..1756873 - 306 15890379 - Atu4609 - glycosyltransferase 1569 53.30 -1 1756928..1758004 - 358 15890378 - Atu4610 - sugar nucleotide epimerase/dehydratase 1570 53.99 -1 1758309..1758584 - 91 17938300 tnp Atu4611 - transposase 1571 47.76 -2 1758821..1761184 - 787 15890377 - Atu4613 - glycosyltransferase 1572 49.43 -2 1761339..1762220 - 293 15890376 wbbL Atu4614 - glycosyltransferase 1573 54.44 -1 1762307..1763173 - 288 159186242 rfbA Atu4615 - glucose-1-phosphate thymidylyltransferase 1574 54.14 -1 1763170..1764063 - 297 15890374 rfbD Atu4616 - dTDP-4-dehydrorhamnose reductase 1575 55.30 -1 1764068..1765123 - 351 159186243 rffB Atu4617 - dTDP-D-glucose-4,6-dehydratase 1576 55.09 -1 1765126..1765695 - 189 15890372 rfbC Atu4618 - dTDP-rhamnose-3,5-epimerase 1577 60.76 0 1765840..1767906 - 688 159186244 uvrD Atu4619 - ATP-dependent DNA helicase 1578 62.47 0 1768173..1768910 - 245 15890370 dppF Atu4620 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1579 63.24 +1 1768907..1769752 - 281 159186245 dppD Atu4621 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1580 64.11 +1 1769739..1770638 - 299 15890368 dppC Atu4622 - ABC transporter, membrane spanning protein (dipeptide) 1581 58.89 0 1770635..1771663 - 342 15890367 dppB Atu4623 - ABC transporter, membrane spanning protein (dipeptide) 1582 59.52 0 1771870..1772583 + 237 15890366 - Atu4624 - GntR family transcriptional regulator 1583 57.90 0 1772650..1773630 + 326 15890365 uxuA Atu4625 - mannonate dehydratase 1584 58.10 0 1773708..1775294 + 528 159186246 - Atu4626 - ABC transporter, substrate binding protein (oligopeptide) 1585 59.98 0 1775884..1776690 + 268 159186247 - Atu4627 - hypothetical protein 1586 61.11 0 1776878..1779217 + 779 159186248 - Atu4628 - GGDEF family protein 1587 58.72 0 1779420..1780313 + 297 159186249 - Atu4629 - oxidoreductase 1588 58.68 0 1780356..1780643 + 95 17938319 - Atu4630 - hypothetical protein 1589 56.35 0 1780640..1781473 + 277 159186250 - Atu4631 - hypothetical protein 1590 59.97 0 1781477..1783792 + 771 15890358 - Atu4632 - ATP-dependent DNA ligase 1591 59.18 0 1783743..1784330 - 195 15890357 pit* Atu4633 - phosphate permease (N-terminal) 1592 57.36 0 1784330..1784974 - 214 15890356 - Atu4634 - hypothetical protein 1593 60.56 0 1785088..1785627 + 179 159186251 - Atu4635 - hypothetical protein 1594 61.39 0 1785648..1788794 - 1048 15890354 - Atu4636 - AcrB/AcrD/AcrF family protein 1595 64.25 +1 1788796..1789953 - 385 159186252 nolF Atu4637 - nolF secretion protein 1596 61.63 0 1790133..1790807 + 224 15890352 - Atu4638 - two component response regulator 1597 60.45 0 1790804..1792138 + 444 15890351 - Atu4639 - two component sensor kinase 1598 62.13 0 1792174..1793121 + 315 159186253 - Atu4640 - hypothetical protein 1599 62.71 0 1793183..1794091 - 302 15890349 oxyR Atu4641 - LysR family transcriptional regulator 1600 61.65 0 1794300..1796471 + 723 159186254 katA Atu4642 - catalase 1601 58.19 0 1796568..1796744 - 58 159186255 - Atu4643 - hypothetical protein 1602 58.16 0 1796867..1797736 - 289 15890346 - Atu4644 - AraC family transcriptional regulator 1603 64.39 +1 1797860..1799311 + 483 15890345 vdh Atu4645 - vanillin: NAD oxidoreductase 1604 61.20 0 1799338..1800234 - 298 15890344 - Atu4646 - LysR family transcriptional regulator 1605 60.27 0 1800329..1801282 + 317 159186256 - Atu4647 - hypothetical protein 1606 60.38 0 1801297..1802808 + 503 15890342 betC Atu4648 - choline sulfatase 1607 60.85 0 1802824..1803717 - 297 159186257 - Atu4649 - carbohydrate kinase 1608 59.27 0 1803714..1804754 - 346 15890340 - Atu4650 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1609 59.66 0 1804754..1806124 - 456 159186258 argH Atu4651 - argininosuccinate lyase 1610 58.48 0 1806273..1807115 - 280 15890338 - Atu4652 - ABC transporter, membrane spanning protein (sugar) 1611 57.22 0 1807112..1808053 - 313 15890337 - Atu4653 - ABC transporter, membrane spanning protein (sugar) 1612 58.37 0 1808071..1809336 - 421 15890336 - Atu4654 - ABC transporter, substrate binding protein (sugar) 1613 62.92 +1 1809583..1810809 + 408 159186259 xylR Atu4655 - ROK family transcriptional regulator 1614 61.96 0 1810829..1813231 + 800 159186260 - Atu4656 - hypothetical protein 1615 59.32 0 1813228..1814139 + 303 15890333 - Atu4657 - hypothetical protein 1616 56.74 0 1814149..1814682 - 177 159186261 - Atu4658 - hypothetical protein 1617 59.68 0 1814687..1815574 - 295 15890331 agpT Atu4659 - AraC family transcriptional regulator 1618 58.49 0 1815772..1817238 + 488 159186262 melA Atu4660 - alpha-galactosidase 1619 59.00 0 1817343..1819430 + 695 159186263 agpA Atu4661 - ABC transporter, substrate binding protein (alpha-galactoside) 1620 60.12 0 1819574..1820581 + 335 15890328 - Atu4662 - ABC transporter, membrane spanning protein (oligopeptide ) 1621 59.98 0 1820583..1821719 + 378 159186264 - Atu4663 - ABC transporter, membrane spanning protein (oligopeptide) 1622 59.65 0 1821733..1823400 + 555 159186265 - Atu4664 - ABC transporter, nucleotide binding/ATPase protein (oligopeptide) 1623 59.02 0 1823423..1824796 + 457 159186266 melA Atu4665 - alpha-galactosidase 1624 61.03 0 1825088..1826152 + 354 15890324 - Atu4666 - HlyD family secretion protein 1625 58.82 0 1826164..1828941 + 925 159186267 - Atu4667 - ABC transporter, nucleotide binding/ATPase protein 1626 58.27 0 1828938..1830056 + 372 15890322 - Atu4668 - ABC transporter, membrane spanning protein 1627 57.26 0 1830326..1830793 + 155 159186268 - Atu4669 - hypothetical protein 1628 57.61 0 1831052..1831294 - 80 17938359 - Atu4670 - hypothetical protein 1629 58.56 0 1831642..1832085 - 147 159186269 - Atu4671 - response regulator 1630 62.51 0 1832465..1833427 + 320 15890319 ftsZ1 Atu4673 - cell division protein FtsZ 1631 59.51 0 1833717..1834415 + 232 159186270 - Atu4674 - GntR family transcriptional regulator 1632 60.04 0 1834525..1835490 + 321 15890317 dapA Atu4675 - dihydrodipicolinate synthase 1633 63.29 +1 1835558..1836595 - 345 159186271 - Atu4676 - putative malate dehydrogenase 1634 46.36 -2 1836657..1836917 + 86 17938366 - Atu4677 - hypothetical protein 1635 59.48 0 1836914..1837720 + 268 15890315 - Atu4678 - ABC transporter, substrate binding protein (amino acid) 1636 57.36 0 1837793..1838458 + 221 15890314 - Atu4679 - ABC transporter, membrane spanning protein (amino acid) 1637 61.77 0 1838471..1839124 + 217 15890313 - Atu4680 - ABC transporter, membrane spanning protein (amino acid) 1638 58.37 0 1839117..1839839 + 240 15890312 - Atu4681 - ABC transporter, nucleotide binding/ATPase protein (amino acid) 1639 63.53 +1 1839839..1841080 + 413 15890311 dadA Atu4682 - D-amino acid dehydrogenase, small subunit 1640 64.04 +1 1841190..1842899 + 569 15890310 - Atu4683 - hypothetical protein 1641 63.07 +1 1842910..1843938 + 342 15890309 - Atu4684 - hypothetical protein 1642 59.98 0 1844086..1845072 - 328 159186272 - Atu4685 - LacI family transcription regulator 1643 59.81 0 1845265..1845585 - 106 159186273 - Atu4686 - hypothetical protein 1644 58.96 0 1845881..1846684 + 267 159186274 - Atu4687 - ABC transporter, substrate binding protein (amino acid) 1645 57.59 0 1846751..1847455 + 234 15890305 - Atu4688 - ABC transporter, membrane spanning protein (amino acid) 1646 58.18 0 1847452..1848111 + 219 15890304 - Atu4689 - ABC transporter, membrane spanning protein (amino acid) 1647 60.39 0 1848155..1848823 + 222 159186275 - Atu4690 - ABC transporter, nucleotide binding/ATPase protein (amino acid) 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.