IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1541	 57.14	0	1731089..1731424	-	111	159186232	-	Atu4582	-	ferredoxin
1542	 59.33	0	1731529..1732128	-	199	159186233	sodBII	Atu4583	-	superoxide dismutase
1543	 63.51	+1	1732293..1732862	-	189	15890404	-	Atu4584	-	TetR family transcriptional regulator
1544	 57.01	0	1732909..1733436	+	175	15890403	-	Atu4585	-	hypothetical protein
1545	 56.37	0	1733522..1734589	-	355	15890402	-	Atu4586	-	choloylglycine hydrolase family protein
1546	 58.30	0	1734728..1735528	+	266	159186234	-	Atu4587	-	hypothetical protein
1547	 56.25	0	1735607..1736230	+	207	15890400	-	Atu4588	-	sodium bile acid symporter family protein
1548	 57.09	0	1736276..1736557	+	93	159186235	-	Atu4589	-	transmembrane transport protein
1549	 61.99	0	1736606..1737652	-	348	159186236	-	Atu4590	-	putative oxidoreductase
1550	 61.81	0	1737812..1738717	+	301	15890397	-	Atu4591	-	LysR family transcriptional regulator
1551	 59.87	0	1738816..1739610	-	264	159186237	-	Atu4592	-	hypothetical protein
1552	 56.54	0	1739625..1740473	-	282	15890395	hpaG	Atu4593	-	2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase
1553	 59.97	0	1740482..1741168	-	228	15890394	-	Atu4594	-	hypothetical protein
1554	 56.93	0	1741177..1741926	-	249	159186238	-	Atu4595	-	dehydrogenase
1555	 55.35	-1	1741987..1742976	-	329	15890392	-	Atu4596	-	hypothetical protein
1556	 56.59	0	1743009..1743812	-	267	15890391	-	Atu4597	-	ABC transporter, membrane spanning protein
1557	 58.64	0	1743946..1744755	+	269	15890390	-	Atu4598	-	ABC transporter, nucleotide binding/ATPase protein
1558	 62.91	+1	1744870..1745640	+	256	159186239	-	Atu4599	-	IclR family transcriptional regulator
1559	 53.68	-1	1745721..1747484	-	587	15890388	-	Atu4600	-	ABC transporter, nucleotide binding/ATPase protein
1560	 60.27	0	1747960..1748787	-	275	15890387	-	Atu4601	-	IS426 transposase
1561	 56.92	0	1748784..1749173	-	129	159186240	-	Atu4602	-	IS426 transposase
1562	 58.58	0	1749248..1749556	+	102	15890385	-	Atu4603	-	IS3 family transposase
1563	 60.65	0	1749572..1750501	-	309	15890384	-	Atu4604	-	IS3 family transposase
1564	 55.06	-1	1750495..1750761	-	88	15890383	-	Atu4605	-	IS3 family transposase
1565	 42.52	-2	1751061..1752671	-	536	159186241	-	Atu4606	-	hypothetical protein
1566	 52.01	-2	1752982..1754100	-	372	15890381	nodX	Atu4607	-	sugar acetylase
1567	 52.48	-2	1754100..1755953	-	617	15890380	-	Atu4608	-	hypothetical protein
1568	 51.47	-2	1755953..1756873	-	306	15890379	-	Atu4609	-	glycosyltransferase
1569	 53.30	-1	1756928..1758004	-	358	15890378	-	Atu4610	-	sugar nucleotide epimerase/dehydratase
1570	 53.99	-1	1758309..1758584	-	91	17938300	tnp	Atu4611	-	transposase
1571	 47.76	-2	1758821..1761184	-	787	15890377	-	Atu4613	-	glycosyltransferase
1572	 49.43	-2	1761339..1762220	-	293	15890376	wbbL	Atu4614	-	glycosyltransferase
1573	 54.44	-1	1762307..1763173	-	288	159186242	rfbA	Atu4615	-	glucose-1-phosphate thymidylyltransferase
1574	 54.14	-1	1763170..1764063	-	297	15890374	rfbD	Atu4616	-	dTDP-4-dehydrorhamnose reductase
1575	 55.30	-1	1764068..1765123	-	351	159186243	rffB	Atu4617	-	dTDP-D-glucose-4,6-dehydratase
1576	 55.09	-1	1765126..1765695	-	189	15890372	rfbC	Atu4618	-	dTDP-rhamnose-3,5-epimerase
1577	 60.76	0	1765840..1767906	-	688	159186244	uvrD	Atu4619	-	ATP-dependent DNA helicase
1578	 62.47	0	1768173..1768910	-	245	15890370	dppF	Atu4620	-	ABC transporter, nucleotide binding/ATPase protein (dipeptide)
1579	 63.24	+1	1768907..1769752	-	281	159186245	dppD	Atu4621	-	ABC transporter, nucleotide binding/ATPase protein (dipeptide)
1580	 64.11	+1	1769739..1770638	-	299	15890368	dppC	Atu4622	-	ABC transporter, membrane spanning protein (dipeptide)
1581	 58.89	0	1770635..1771663	-	342	15890367	dppB	Atu4623	-	ABC transporter, membrane spanning protein (dipeptide)
1582	 59.52	0	1771870..1772583	+	237	15890366	-	Atu4624	-	GntR family transcriptional regulator
1583	 57.90	0	1772650..1773630	+	326	15890365	uxuA	Atu4625	-	mannonate dehydratase
1584	 58.10	0	1773708..1775294	+	528	159186246	-	Atu4626	-	ABC transporter, substrate binding protein (oligopeptide)
1585	 59.98	0	1775884..1776690	+	268	159186247	-	Atu4627	-	hypothetical protein
1586	 61.11	0	1776878..1779217	+	779	159186248	-	Atu4628	-	GGDEF family protein
1587	 58.72	0	1779420..1780313	+	297	159186249	-	Atu4629	-	oxidoreductase
1588	 58.68	0	1780356..1780643	+	95	17938319	-	Atu4630	-	hypothetical protein
1589	 56.35	0	1780640..1781473	+	277	159186250	-	Atu4631	-	hypothetical protein
1590	 59.97	0	1781477..1783792	+	771	15890358	-	Atu4632	-	ATP-dependent DNA ligase
1591	 59.18	0	1783743..1784330	-	195	15890357	pit*	Atu4633	-	phosphate permease (N-terminal)
1592	 57.36	0	1784330..1784974	-	214	15890356	-	Atu4634	-	hypothetical protein
1593	 60.56	0	1785088..1785627	+	179	159186251	-	Atu4635	-	hypothetical protein
1594	 61.39	0	1785648..1788794	-	1048	15890354	-	Atu4636	-	AcrB/AcrD/AcrF family protein
1595	 64.25	+1	1788796..1789953	-	385	159186252	nolF	Atu4637	-	nolF secretion protein
1596	 61.63	0	1790133..1790807	+	224	15890352	-	Atu4638	-	two component response regulator
1597	 60.45	0	1790804..1792138	+	444	15890351	-	Atu4639	-	two component sensor kinase
1598	 62.13	0	1792174..1793121	+	315	159186253	-	Atu4640	-	hypothetical protein
1599	 62.71	0	1793183..1794091	-	302	15890349	oxyR	Atu4641	-	LysR family transcriptional regulator
1600	 61.65	0	1794300..1796471	+	723	159186254	katA	Atu4642	-	catalase
1601	 58.19	0	1796568..1796744	-	58	159186255	-	Atu4643	-	hypothetical protein
1602	 58.16	0	1796867..1797736	-	289	15890346	-	Atu4644	-	AraC family transcriptional regulator
1603	 64.39	+1	1797860..1799311	+	483	15890345	vdh	Atu4645	-	vanillin: NAD oxidoreductase
1604	 61.20	0	1799338..1800234	-	298	15890344	-	Atu4646	-	LysR family transcriptional regulator
1605	 60.27	0	1800329..1801282	+	317	159186256	-	Atu4647	-	hypothetical protein
1606	 60.38	0	1801297..1802808	+	503	15890342	betC	Atu4648	-	choline sulfatase
1607	 60.85	0	1802824..1803717	-	297	159186257	-	Atu4649	-	carbohydrate kinase
1608	 59.27	0	1803714..1804754	-	346	15890340	-	Atu4650	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1609	 59.66	0	1804754..1806124	-	456	159186258	argH	Atu4651	-	argininosuccinate lyase
1610	 58.48	0	1806273..1807115	-	280	15890338	-	Atu4652	-	ABC transporter, membrane spanning protein (sugar)
1611	 57.22	0	1807112..1808053	-	313	15890337	-	Atu4653	-	ABC transporter, membrane spanning protein (sugar)
1612	 58.37	0	1808071..1809336	-	421	15890336	-	Atu4654	-	ABC transporter, substrate binding protein (sugar)
1613	 62.92	+1	1809583..1810809	+	408	159186259	xylR	Atu4655	-	ROK family transcriptional regulator
1614	 61.96	0	1810829..1813231	+	800	159186260	-	Atu4656	-	hypothetical protein
1615	 59.32	0	1813228..1814139	+	303	15890333	-	Atu4657	-	hypothetical protein
1616	 56.74	0	1814149..1814682	-	177	159186261	-	Atu4658	-	hypothetical protein
1617	 59.68	0	1814687..1815574	-	295	15890331	agpT	Atu4659	-	AraC family transcriptional regulator
1618	 58.49	0	1815772..1817238	+	488	159186262	melA	Atu4660	-	alpha-galactosidase
1619	 59.00	0	1817343..1819430	+	695	159186263	agpA	Atu4661	-	ABC transporter, substrate binding protein (alpha-galactoside)
1620	 60.12	0	1819574..1820581	+	335	15890328	-	Atu4662	-	ABC transporter, membrane spanning protein (oligopeptide )
1621	 59.98	0	1820583..1821719	+	378	159186264	-	Atu4663	-	ABC transporter, membrane spanning protein (oligopeptide)
1622	 59.65	0	1821733..1823400	+	555	159186265	-	Atu4664	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1623	 59.02	0	1823423..1824796	+	457	159186266	melA	Atu4665	-	alpha-galactosidase
1624	 61.03	0	1825088..1826152	+	354	15890324	-	Atu4666	-	HlyD family secretion protein
1625	 58.82	0	1826164..1828941	+	925	159186267	-	Atu4667	-	ABC transporter, nucleotide binding/ATPase protein
1626	 58.27	0	1828938..1830056	+	372	15890322	-	Atu4668	-	ABC transporter, membrane spanning protein
1627	 57.26	0	1830326..1830793	+	155	159186268	-	Atu4669	-	hypothetical protein
1628	 57.61	0	1831052..1831294	-	80	17938359	-	Atu4670	-	hypothetical protein
1629	 58.56	0	1831642..1832085	-	147	159186269	-	Atu4671	-	response regulator
1630	 62.51	0	1832465..1833427	+	320	15890319	ftsZ1	Atu4673	-	cell division protein FtsZ
1631	 59.51	0	1833717..1834415	+	232	159186270	-	Atu4674	-	GntR family transcriptional regulator
1632	 60.04	0	1834525..1835490	+	321	15890317	dapA	Atu4675	-	dihydrodipicolinate synthase
1633	 63.29	+1	1835558..1836595	-	345	159186271	-	Atu4676	-	putative malate dehydrogenase
1634	 46.36	-2	1836657..1836917	+	86	17938366	-	Atu4677	-	hypothetical protein
1635	 59.48	0	1836914..1837720	+	268	15890315	-	Atu4678	-	ABC transporter, substrate binding protein (amino acid)
1636	 57.36	0	1837793..1838458	+	221	15890314	-	Atu4679	-	ABC transporter, membrane spanning protein (amino acid)
1637	 61.77	0	1838471..1839124	+	217	15890313	-	Atu4680	-	ABC transporter, membrane spanning protein (amino acid)
1638	 58.37	0	1839117..1839839	+	240	15890312	-	Atu4681	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1639	 63.53	+1	1839839..1841080	+	413	15890311	dadA	Atu4682	-	D-amino acid dehydrogenase, small subunit
1640	 64.04	+1	1841190..1842899	+	569	15890310	-	Atu4683	-	hypothetical protein
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.