version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1505 60.10 0 1689531..1690703 - 390 159186210 pobA Atu4544 - 4-hydroxybenzoate 3-monooxygenase 1506 60.93 0 1690822..1691745 + 307 159186211 pobR Atu4545 - AraC family transcriptional regulator 1507 63.12 +1 1691715..1692476 - 253 159186212 pcaR Atu4546 - IclR family transcriptional regulator 1508 60.59 0 1692615..1693322 + 235 15890439 pcaI Atu4547 - 3-oxoadipate CoA-transferase subunit A 1509 61.93 0 1693319..1694014 + 231 15890438 pcaJ Atu4548 - 3-oxoadipate CoA-transferase subunit B 1510 65.26 +1 1694025..1695230 + 401 159186213 pcaF Atu4549 - beta-ketoadipyl CoA thiolase 1511 62.49 0 1695677..1696705 + 342 159186214 - Atu4550 - LacI family transcription regulator 1512 59.98 0 1696990..1697931 + 313 159186215 - Atu4551 - ABC transporter, substrate binding protein 1513 57.47 0 1698068..1698991 + 307 15890434 - Atu4552 - ABC transporter, substrate binding protein 1514 59.20 0 1699041..1699937 + 298 15890433 iolH Atu4553 - myo-inositol catabolism protein 1515 62.71 0 1699948..1700958 + 336 159186216 iolG Atu4554 - myo-inositol 2-dehydrogenase 1516 61.96 0 1700967..1701752 + 261 159186217 - Atu4555 - hypothetical protein 1517 63.94 +1 1701944..1703005 + 353 15890430 purR Atu4556 - LacI family transcription regulator 1518 60.26 0 1703015..1703794 - 259 159186218 - Atu4557 - ABC transporter, membrane spanning protein (sugar) 1519 59.64 0 1704067..1705062 - 331 159186219 - Atu4558 - ABC transporter, membrane spanning protein (sugar) 1520 61.41 0 1705064..1706167 - 367 159186220 - Atu4559 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1521 62.26 0 1706167..1707528 - 453 15890426 - Atu4560 - polygalacturonase 1522 61.28 0 1707525..1708619 - 364 159186221 - Atu4561 - hypothetical protein 1523 64.01 +1 1708633..1711155 - 840 15890424 - Atu4562 - hypothetical protein 1524 58.86 0 1711350..1712630 + 426 159186222 - Atu4564 - ABC transporter, substrate binding protein (sugar) 1525 61.27 0 1712863..1714845 + 660 15890422 - Atu4566 - serine protease 1526 60.40 0 1714939..1716087 - 382 159186223 - Atu4567 - ROK family transcriptional regulator 1527 57.80 0 1716233..1717462 + 409 15890420 - Atu4568 - ABC transporter, substrate binding protein 1528 62.34 0 1717549..1718589 + 346 15890419 - Atu4569 - ABC transporter, nucleotide binding/ATPase protein 1529 59.30 0 1718589..1719443 + 284 159186224 - Atu4570 - ABC transporter, membrane spanning protein 1530 60.65 0 1719443..1720306 + 287 159186225 - Atu4571 - ABC transporter, membrane spanning protein 1531 61.87 0 1720353..1721249 + 298 159186226 - Atu4572 - hypothetical protein 1532 63.74 +1 1721246..1722031 + 261 159186227 - Atu4573 - inositol monophosphatase family protein 1533 60.00 0 1722094..1722843 - 249 15890414 - Atu4574 - dehydrogenase 1534 59.63 0 1722898..1723863 + 321 15890413 - Atu4575 - AraC family transcriptional regulator 1535 56.52 0 1723997..1725070 - 357 159186228 - Atu4576 - ROK family transcriptional regulator 1536 58.71 0 1725414..1726406 + 330 159186229 - Atu4577 - ABC transporter, substrate binding protein 1537 56.26 0 1726518..1727603 + 361 159186230 - Atu4578 - ABC transporter, nucleotide binding/ATPase protein 1538 57.18 0 1727600..1729285 + 561 15890409 - Atu4579 - ABC transporter, membrane spanning protein 1539 56.01 -1 1729367..1730323 + 318 15890408 - Atu4580 - hypothetical protein 1540 62.90 +1 1730514..1731044 - 176 159186231 - Atu4581 - hypothetical protein 1541 57.14 0 1731089..1731424 - 111 159186232 - Atu4582 - ferredoxin 1542 59.33 0 1731529..1732128 - 199 159186233 sodBII Atu4583 - superoxide dismutase 1543 63.51 +1 1732293..1732862 - 189 15890404 - Atu4584 - TetR family transcriptional regulator 1544 57.01 0 1732909..1733436 + 175 15890403 - Atu4585 - hypothetical protein 1545 56.37 0 1733522..1734589 - 355 15890402 - Atu4586 - choloylglycine hydrolase family protein 1546 58.30 0 1734728..1735528 + 266 159186234 - Atu4587 - hypothetical protein 1547 56.25 0 1735607..1736230 + 207 15890400 - Atu4588 - sodium bile acid symporter family protein 1548 57.09 0 1736276..1736557 + 93 159186235 - Atu4589 - transmembrane transport protein 1549 61.99 0 1736606..1737652 - 348 159186236 - Atu4590 - putative oxidoreductase 1550 61.81 0 1737812..1738717 + 301 15890397 - Atu4591 - LysR family transcriptional regulator 1551 59.87 0 1738816..1739610 - 264 159186237 - Atu4592 - hypothetical protein 1552 56.54 0 1739625..1740473 - 282 15890395 hpaG Atu4593 - 2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase 1553 59.97 0 1740482..1741168 - 228 15890394 - Atu4594 - hypothetical protein 1554 56.93 0 1741177..1741926 - 249 159186238 - Atu4595 - dehydrogenase 1555 55.35 -1 1741987..1742976 - 329 15890392 - Atu4596 - hypothetical protein 1556 56.59 0 1743009..1743812 - 267 15890391 - Atu4597 - ABC transporter, membrane spanning protein 1557 58.64 0 1743946..1744755 + 269 15890390 - Atu4598 - ABC transporter, nucleotide binding/ATPase protein 1558 62.91 +1 1744870..1745640 + 256 159186239 - Atu4599 - IclR family transcriptional regulator 1559 53.68 -1 1745721..1747484 - 587 15890388 - Atu4600 - ABC transporter, nucleotide binding/ATPase protein 1560 60.27 0 1747960..1748787 - 275 15890387 - Atu4601 - IS426 transposase 1561 56.92 0 1748784..1749173 - 129 159186240 - Atu4602 - IS426 transposase 1562 58.58 0 1749248..1749556 + 102 15890385 - Atu4603 - IS3 family transposase 1563 60.65 0 1749572..1750501 - 309 15890384 - Atu4604 - IS3 family transposase 1564 55.06 -1 1750495..1750761 - 88 15890383 - Atu4605 - IS3 family transposase 1565 42.52 -2 1751061..1752671 - 536 159186241 - Atu4606 - hypothetical protein 1566 52.01 -2 1752982..1754100 - 372 15890381 nodX Atu4607 - sugar acetylase 1567 52.48 -2 1754100..1755953 - 617 15890380 - Atu4608 - hypothetical protein 1568 51.47 -2 1755953..1756873 - 306 15890379 - Atu4609 - glycosyltransferase 1569 53.30 -1 1756928..1758004 - 358 15890378 - Atu4610 - sugar nucleotide epimerase/dehydratase 1570 53.99 -1 1758309..1758584 - 91 17938300 tnp Atu4611 - transposase 1571 47.76 -2 1758821..1761184 - 787 15890377 - Atu4613 - glycosyltransferase 1572 49.43 -2 1761339..1762220 - 293 15890376 wbbL Atu4614 - glycosyltransferase 1573 54.44 -1 1762307..1763173 - 288 159186242 rfbA Atu4615 - glucose-1-phosphate thymidylyltransferase 1574 54.14 -1 1763170..1764063 - 297 15890374 rfbD Atu4616 - dTDP-4-dehydrorhamnose reductase 1575 55.30 -1 1764068..1765123 - 351 159186243 rffB Atu4617 - dTDP-D-glucose-4,6-dehydratase 1576 55.09 -1 1765126..1765695 - 189 15890372 rfbC Atu4618 - dTDP-rhamnose-3,5-epimerase 1577 60.76 0 1765840..1767906 - 688 159186244 uvrD Atu4619 - ATP-dependent DNA helicase 1578 62.47 0 1768173..1768910 - 245 15890370 dppF Atu4620 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1579 63.24 +1 1768907..1769752 - 281 159186245 dppD Atu4621 - ABC transporter, nucleotide binding/ATPase protein (dipeptide) 1580 64.11 +1 1769739..1770638 - 299 15890368 dppC Atu4622 - ABC transporter, membrane spanning protein (dipeptide) 1581 58.89 0 1770635..1771663 - 342 15890367 dppB Atu4623 - ABC transporter, membrane spanning protein (dipeptide) 1582 59.52 0 1771870..1772583 + 237 15890366 - Atu4624 - GntR family transcriptional regulator 1583 57.90 0 1772650..1773630 + 326 15890365 uxuA Atu4625 - mannonate dehydratase 1584 58.10 0 1773708..1775294 + 528 159186246 - Atu4626 - ABC transporter, substrate binding protein (oligopeptide) 1585 59.98 0 1775884..1776690 + 268 159186247 - Atu4627 - hypothetical protein 1586 61.11 0 1776878..1779217 + 779 159186248 - Atu4628 - GGDEF family protein 1587 58.72 0 1779420..1780313 + 297 159186249 - Atu4629 - oxidoreductase 1588 58.68 0 1780356..1780643 + 95 17938319 - Atu4630 - hypothetical protein 1589 56.35 0 1780640..1781473 + 277 159186250 - Atu4631 - hypothetical protein 1590 59.97 0 1781477..1783792 + 771 15890358 - Atu4632 - ATP-dependent DNA ligase 1591 59.18 0 1783743..1784330 - 195 15890357 pit* Atu4633 - phosphate permease (N-terminal) 1592 57.36 0 1784330..1784974 - 214 15890356 - Atu4634 - hypothetical protein 1593 60.56 0 1785088..1785627 + 179 159186251 - Atu4635 - hypothetical protein 1594 61.39 0 1785648..1788794 - 1048 15890354 - Atu4636 - AcrB/AcrD/AcrF family protein 1595 64.25 +1 1788796..1789953 - 385 159186252 nolF Atu4637 - nolF secretion protein 1596 61.63 0 1790133..1790807 + 224 15890352 - Atu4638 - two component response regulator 1597 60.45 0 1790804..1792138 + 444 15890351 - Atu4639 - two component sensor kinase 1598 62.13 0 1792174..1793121 + 315 159186253 - Atu4640 - hypothetical protein 1599 62.71 0 1793183..1794091 - 302 15890349 oxyR Atu4641 - LysR family transcriptional regulator 1600 61.65 0 1794300..1796471 + 723 159186254 katA Atu4642 - catalase 1601 58.19 0 1796568..1796744 - 58 159186255 - Atu4643 - hypothetical protein 1602 58.16 0 1796867..1797736 - 289 15890346 - Atu4644 - AraC family transcriptional regulator 1603 64.39 +1 1797860..1799311 + 483 15890345 vdh Atu4645 - vanillin: NAD oxidoreductase 1604 61.20 0 1799338..1800234 - 298 15890344 - Atu4646 - LysR family transcriptional regulator 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0