version 1.0
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577 1851 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1442 65.49 +1 1625848..1626870 + 340 15890504 - Atu4481 - LacI family transcription regulator 1443 63.37 +1 1626918..1628372 + 484 159186181 xylB Atu4482 - xylulokinase 1444 58.81 0 1628616..1629926 + 436 159186182 xylA Atu4483 - xylose isomerase 1445 62.35 0 1629917..1630402 - 161 159186183 - Atu4484 - hypothetical protein 1446 59.93 0 1630604..1631983 + 459 159186184 bgl Atu4485 - beta-glucosidase 1447 59.37 0 1632276..1632905 + 209 159186185 - Atu4486 - nitroreductase 1448 62.06 0 1633274..1634314 + 346 159186186 - Atu4487 - ABC transporter, nucleotide binding/ATPase protein 1449 63.83 +1 1634304..1634972 + 222 15890497 - Atu4488 - ABC transporter, membrane spanning protein 1450 59.23 0 1635024..1635803 + 259 15890496 - Atu4489 - outer membrane lipoprotein 1451 62.63 0 1636040..1638244 + 734 159186187 - Atu4490 - GGDEF family protein 1452 61.59 0 1638468..1639412 - 314 159186188 - Atu4491 - hypothetical protein 1453 63.59 +1 1639697..1640605 - 302 159186189 - Atu4492 - hypothetical protein 1454 57.87 0 1640589..1641077 - 162 15890492 - Atu4493 - hypothetical protein 1455 65.88 +1 1641249..1641887 + 212 159186190 kdgA Atu4494 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1456 62.50 0 1642010..1642705 + 231 159186191 - Atu4495 - hypothetical protein 1457 57.43 0 1642963..1643655 + 230 159186192 - Atu4496 - acetyltransferase 1458 62.60 0 1643642..1643887 + 81 15890488 - Atu4497 - hypothetical protein 1459 64.38 +1 1643968..1645017 - 349 15890487 - Atu4498 - hypothetical protein 1460 56.25 0 1645011..1645778 - 255 159186193 - Atu4499 - hypothetical protein 1461 62.37 0 1645850..1647082 + 410 15890485 setA Atu4500 - MFS permease 1462 63.54 +1 1647295..1648287 - 330 15890484 - Atu4501 - hypothetical protein 1463 60.82 0 1648772..1649899 - 375 15890483 cobW Atu4502 - cobalamin synthesis protein 1464 59.55 0 1650015..1650815 - 266 15890482 - Atu4503 - creatinine amidohydrolase 1465 57.84 0 1650895..1651404 + 169 159186194 - Atu4504 - MarR family transcriptional regulator 1466 63.05 +1 1651537..1652559 + 340 159186195 pckR Atu4505 - LacI family transcription regulator 1467 56.14 -1 1652752..1652979 + 75 15890479 - Atu4506 - hypothetical protein 1468 61.79 0 1653012..1653974 + 320 15890478 - Atu4507 - dehydrogenase 1469 62.68 0 1654109..1655236 - 375 15890477 - Atu4508 - oxoreductase 1470 60.39 0 1655460..1656272 - 270 15890476 iolB Atu4509 - hypothetical protein 1471 61.61 0 1656372..1657280 - 302 15890475 iolE Atu4510 - hypothetical protein 1472 61.58 0 1657282..1659108 - 608 15890474 iolD Atu4511 - acetolactate synthase 1473 61.44 0 1659105..1660940 - 611 159186196 iolC Atu4512 - myo-inositol catabolism IolC protein 1474 60.54 0 1661227..1662042 - 271 159186197 - Atu4514 - RpiR family transcriptional regulator 1475 63.46 +1 1662144..1662860 - 238 159186198 livF Atu4515 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1476 63.01 +1 1662841..1663605 - 254 15890470 livG Atu4516 - ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid) 1477 63.19 +1 1663602..1664609 - 335 15890469 livM Atu4517 - ABC transporter, membrane spanning protein (branched chain amino acid) 1478 62.27 0 1664611..1665474 - 287 159186199 livH Atu4518 - ABC transporter, membrane spanning protein (branched chain amino acid) 1479 59.16 0 1665565..1666737 - 390 159186200 livJ Atu4519 - ABC transporter, substrate binding protein (branched amino acid) 1480 57.60 0 1667077..1667451 + 124 159186377 - Atu8198 - hypothetical protein 1481 58.55 0 1667535..1668359 - 274 15890465 - Atu4521 - AraC family transcriptional regulator 1482 61.71 0 1668480..1670213 - 577 15890464 - Atu4522 - hypothetical protein 1483 61.96 0 1670219..1671067 - 282 159186201 - Atu4523 - ABC transporter, membrane spanning protein (oligopeptide) 1484 61.51 0 1671074..1671868 - 264 159186202 - Atu4524 - ABC transporter, membrane spanning protein (oligopeptide) 1485 59.24 0 1672088..1673623 - 511 15890461 - Atu4525 - ABC transporter, substrate binding protein (oligopeptide) 1486 60.68 0 1673665..1675485 - 606 15890460 - Atu4526 - ABC transporter, nucleotide binding/ATPase protein 1487 64.81 +1 1675567..1675728 + 53 17938216 - Atu4527 - hypothetical protein 1488 42.95 -2 1675753..1675908 + 51 15890459 - Atu8041 - hypothetical protein 1489 55.78 -1 1676076..1676378 + 100 15890458 - Atu4528 - hypothetical protein 1490 61.41 0 1676442..1678343 - 633 159186203 - Atu4529 - hypothetical protein 1491 57.43 0 1678465..1679157 + 230 159186204 - Atu4530 - TetR family transcriptional regulator 1492 58.56 0 1679132..1679575 - 147 159186205 aroQ Atu4531 - 3-dehydroquinate dehydratase 1493 62.53 0 1679572..1680441 - 289 15890454 aroE Atu4532 - shikimate 5-dehydrogenase 1494 60.89 0 1680513..1681274 - 253 159186206 - Atu4533 - ABC transporter, nucleotide binding/ATPase protein (amino acid) 1495 60.57 0 1681305..1682141 - 278 15890452 - Atu4534 - ABC transporter, substrate binding protein (amino acid) 1496 58.57 0 1682178..1683017 - 279 159186207 - Atu4535 - ABC transporter, substrate binding protein (amino acid) 1497 62.52 0 1683061..1683711 - 216 15890450 - Atu4536 - ABC transporter, membrane spanning protein (amino acid) 1498 59.19 0 1683722..1684390 - 222 159186208 - Atu4537 - ABC transporter, membrane spanning protein (amino acid) 1499 63.56 +1 1684759..1685820 - 353 15890448 pcaB Atu4538 - 3-carboxy-cis,cis-muconate cycloisomerase 1500 59.58 0 1685833..1686453 - 206 15890447 pcaG Atu4539 - protocatechuate 3,4-dioxygenase alpha chain 1501 60.46 0 1686456..1687196 - 246 15890446 pcaH Atu4540 - protocatechuate 3,4-dioxygenase beta chain 1502 61.38 0 1687193..1687627 - 144 15890445 pcaC Atu4541 - carboxymuconolactone decarboxylase 1503 60.78 0 1687631..1688428 - 265 15890444 pcaD Atu4542 - beta-ketoadipate enol-lactone hydrolase 1504 63.89 +1 1688524..1689459 + 311 159186209 pcaQ Atu4543 - LysR family transcriptional regulator 1505 60.10 0 1689531..1690703 - 390 159186210 pobA Atu4544 - 4-hydroxybenzoate 3-monooxygenase 1506 60.93 0 1690822..1691745 + 307 159186211 pobR Atu4545 - AraC family transcriptional regulator 1507 63.12 +1 1691715..1692476 - 253 159186212 pcaR Atu4546 - IclR family transcriptional regulator 1508 60.59 0 1692615..1693322 + 235 15890439 pcaI Atu4547 - 3-oxoadipate CoA-transferase subunit A 1509 61.93 0 1693319..1694014 + 231 15890438 pcaJ Atu4548 - 3-oxoadipate CoA-transferase subunit B 1510 65.26 +1 1694025..1695230 + 401 159186213 pcaF Atu4549 - beta-ketoadipyl CoA thiolase 1511 62.49 0 1695677..1696705 + 342 159186214 - Atu4550 - LacI family transcription regulator 1512 59.98 0 1696990..1697931 + 313 159186215 - Atu4551 - ABC transporter, substrate binding protein 1513 57.47 0 1698068..1698991 + 307 15890434 - Atu4552 - ABC transporter, substrate binding protein 1514 59.20 0 1699041..1699937 + 298 15890433 iolH Atu4553 - myo-inositol catabolism protein 1515 62.71 0 1699948..1700958 + 336 159186216 iolG Atu4554 - myo-inositol 2-dehydrogenase 1516 61.96 0 1700967..1701752 + 261 159186217 - Atu4555 - hypothetical protein 1517 63.94 +1 1701944..1703005 + 353 15890430 purR Atu4556 - LacI family transcription regulator 1518 60.26 0 1703015..1703794 - 259 159186218 - Atu4557 - ABC transporter, membrane spanning protein (sugar) 1519 59.64 0 1704067..1705062 - 331 159186219 - Atu4558 - ABC transporter, membrane spanning protein (sugar) 1520 61.41 0 1705064..1706167 - 367 159186220 - Atu4559 - ABC transporter, nucleotide binding/ATPase protein (sugar) 1521 62.26 0 1706167..1707528 - 453 15890426 - Atu4560 - polygalacturonase 1522 61.28 0 1707525..1708619 - 364 159186221 - Atu4561 - hypothetical protein 1523 64.01 +1 1708633..1711155 - 840 15890424 - Atu4562 - hypothetical protein 1524 58.86 0 1711350..1712630 + 426 159186222 - Atu4564 - ABC transporter, substrate binding protein (sugar) 1525 61.27 0 1712863..1714845 + 660 15890422 - Atu4566 - serine protease 1526 60.40 0 1714939..1716087 - 382 159186223 - Atu4567 - ROK family transcriptional regulator 1527 57.80 0 1716233..1717462 + 409 15890420 - Atu4568 - ABC transporter, substrate binding protein 1528 62.34 0 1717549..1718589 + 346 15890419 - Atu4569 - ABC transporter, nucleotide binding/ATPase protein 1529 59.30 0 1718589..1719443 + 284 159186224 - Atu4570 - ABC transporter, membrane spanning protein 1530 60.65 0 1719443..1720306 + 287 159186225 - Atu4571 - ABC transporter, membrane spanning protein 1531 61.87 0 1720353..1721249 + 298 159186226 - Atu4572 - hypothetical protein 1532 63.74 +1 1721246..1722031 + 261 159186227 - Atu4573 - inositol monophosphatase family protein 1533 60.00 0 1722094..1722843 - 249 15890414 - Atu4574 - dehydrogenase 1534 59.63 0 1722898..1723863 + 321 15890413 - Atu4575 - AraC family transcriptional regulator 1535 56.52 0 1723997..1725070 - 357 159186228 - Atu4576 - ROK family transcriptional regulator 1536 58.71 0 1725414..1726406 + 330 159186229 - Atu4577 - ABC transporter, substrate binding protein 1537 56.26 0 1726518..1727603 + 361 159186230 - Atu4578 - ABC transporter, nucleotide binding/ATPase protein 1538 57.18 0 1727600..1729285 + 561 15890409 - Atu4579 - ABC transporter, membrane spanning protein 1539 56.01 -1 1729367..1730323 + 318 15890408 - Atu4580 - hypothetical protein 1540 62.90 +1 1730514..1731044 - 176 159186231 - Atu4581 - hypothetical protein 1541 57.14 0 1731089..1731424 - 111 159186232 - Atu4582 - ferredoxin 59.48 MEAN 3.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0