IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1422	 51.05	-2	1604934..1605170	+	78	15890524	-	Atu4460	-	hypothetical protein
1423	 56.60	0	1605176..1605463	+	95	15890523	-	Atu4461	-	hypothetical protein
1424	 62.89	+1	1605460..1606491	-	343	15890522	-	Atu4462	-	transcriptional regulator
1425	 61.80	0	1606687..1607652	+	321	15890521	talB	Atu4464	-	transaldolase B
1426	 64.19	+1	1607759..1608526	-	255	15890520	kdgR	Atu4465	-	transcriptional regulator
1427	 62.02	0	1608724..1609455	+	243	159186173	-	Atu4466	-	oxidoreductase
1428	 55.75	-1	1609511..1609684	-	57	159186174	-	Atu4467	-	hypothetical protein
1429	 59.77	0	1609891..1610745	-	284	15890517	sitD	Atu4468	-	ABC transporter, membrane spanning protein (iron transport)
1430	 60.63	0	1610742..1611602	-	286	159186175	sitC	Atu4469	-	ABC transporter, membrane spanning protein (iron)
1431	 59.14	0	1611583..1612485	-	300	159186176	sitB	Atu4470	-	ABC transporter, nucleotide binding/ATPase protein (iron)
1432	 57.78	0	1612488..1613387	-	299	159186177	sitA	Atu4471	-	ABC transporter, substrate binding protein (iron)
1433	 61.28	0	1613672..1614580	+	302	159186178	-	Atu4472	-	hypothetical protein
1434	 60.33	0	1614827..1616326	-	499	15890512	lysS	Atu4473	-	lysyl-tRNA synthetase
1435	 61.11	0	1616576..1618033	-	485	159186179	gltX	Atu4474	-	glutamyl-tRNA synthetase
1436	 60.52	0	1618245..1620017	-	590	15890510	-	Atu4475	-	transporter
1437	 60.50	0	1620256..1621017	-	253	159186180	-	Atu4476	-	hypothetical protein
1438	 59.97	0	1621200..1621886	-	228	15890508	-	Atu4477	-	TetR family transcriptional regulator
1439	 60.74	0	1621965..1623263	+	432	15890507	emrA	Atu4478	-	multidrug resistance efflux pump
1440	 60.35	0	1623285..1624868	+	527	15890506	emrB	Atu4479	-	MFS permease
1441	 57.41	0	1625108..1625755	+	215	15890505	-	Atu4480	-	hypothetical protein
1442	 65.49	+1	1625848..1626870	+	340	15890504	-	Atu4481	-	LacI family transcription regulator
1443	 63.37	+1	1626918..1628372	+	484	159186181	xylB	Atu4482	-	xylulokinase
1444	 58.81	0	1628616..1629926	+	436	159186182	xylA	Atu4483	-	xylose isomerase
1445	 62.35	0	1629917..1630402	-	161	159186183	-	Atu4484	-	hypothetical protein
1446	 59.93	0	1630604..1631983	+	459	159186184	bgl	Atu4485	-	beta-glucosidase
1447	 59.37	0	1632276..1632905	+	209	159186185	-	Atu4486	-	nitroreductase
1448	 62.06	0	1633274..1634314	+	346	159186186	-	Atu4487	-	ABC transporter, nucleotide binding/ATPase protein
1449	 63.83	+1	1634304..1634972	+	222	15890497	-	Atu4488	-	ABC transporter, membrane spanning protein
1450	 59.23	0	1635024..1635803	+	259	15890496	-	Atu4489	-	outer membrane lipoprotein
1451	 62.63	0	1636040..1638244	+	734	159186187	-	Atu4490	-	GGDEF family protein
1452	 61.59	0	1638468..1639412	-	314	159186188	-	Atu4491	-	hypothetical protein
1453	 63.59	+1	1639697..1640605	-	302	159186189	-	Atu4492	-	hypothetical protein
1454	 57.87	0	1640589..1641077	-	162	15890492	-	Atu4493	-	hypothetical protein
1455	 65.88	+1	1641249..1641887	+	212	159186190	kdgA	Atu4494	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1456	 62.50	0	1642010..1642705	+	231	159186191	-	Atu4495	-	hypothetical protein
1457	 57.43	0	1642963..1643655	+	230	159186192	-	Atu4496	-	acetyltransferase
1458	 62.60	0	1643642..1643887	+	81	15890488	-	Atu4497	-	hypothetical protein
1459	 64.38	+1	1643968..1645017	-	349	15890487	-	Atu4498	-	hypothetical protein
1460	 56.25	0	1645011..1645778	-	255	159186193	-	Atu4499	-	hypothetical protein
1461	 62.37	0	1645850..1647082	+	410	15890485	setA	Atu4500	-	MFS permease
1462	 63.54	+1	1647295..1648287	-	330	15890484	-	Atu4501	-	hypothetical protein
1463	 60.82	0	1648772..1649899	-	375	15890483	cobW	Atu4502	-	cobalamin synthesis protein
1464	 59.55	0	1650015..1650815	-	266	15890482	-	Atu4503	-	creatinine amidohydrolase
1465	 57.84	0	1650895..1651404	+	169	159186194	-	Atu4504	-	MarR family transcriptional regulator
1466	 63.05	+1	1651537..1652559	+	340	159186195	pckR	Atu4505	-	LacI family transcription regulator
1467	 56.14	-1	1652752..1652979	+	75	15890479	-	Atu4506	-	hypothetical protein
1468	 61.79	0	1653012..1653974	+	320	15890478	-	Atu4507	-	dehydrogenase
1469	 62.68	0	1654109..1655236	-	375	15890477	-	Atu4508	-	oxoreductase
1470	 60.39	0	1655460..1656272	-	270	15890476	iolB	Atu4509	-	hypothetical protein
1471	 61.61	0	1656372..1657280	-	302	15890475	iolE	Atu4510	-	hypothetical protein
1472	 61.58	0	1657282..1659108	-	608	15890474	iolD	Atu4511	-	acetolactate synthase
1473	 61.44	0	1659105..1660940	-	611	159186196	iolC	Atu4512	-	myo-inositol catabolism IolC protein
1474	 60.54	0	1661227..1662042	-	271	159186197	-	Atu4514	-	RpiR family transcriptional regulator
1475	 63.46	+1	1662144..1662860	-	238	159186198	livF	Atu4515	-	ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid)
1476	 63.01	+1	1662841..1663605	-	254	15890470	livG	Atu4516	-	ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid)
1477	 63.19	+1	1663602..1664609	-	335	15890469	livM	Atu4517	-	ABC transporter, membrane spanning protein (branched chain amino acid)
1478	 62.27	0	1664611..1665474	-	287	159186199	livH	Atu4518	-	ABC transporter, membrane spanning protein (branched chain amino acid)
1479	 59.16	0	1665565..1666737	-	390	159186200	livJ	Atu4519	-	ABC transporter, substrate binding protein (branched amino acid)
1480	 57.60	0	1667077..1667451	+	124	159186377	-	Atu8198	-	hypothetical protein
1481	 58.55	0	1667535..1668359	-	274	15890465	-	Atu4521	-	AraC family transcriptional regulator
1482	 61.71	0	1668480..1670213	-	577	15890464	-	Atu4522	-	hypothetical protein
1483	 61.96	0	1670219..1671067	-	282	159186201	-	Atu4523	-	ABC transporter, membrane spanning protein (oligopeptide)
1484	 61.51	0	1671074..1671868	-	264	159186202	-	Atu4524	-	ABC transporter, membrane spanning protein (oligopeptide)
1485	 59.24	0	1672088..1673623	-	511	15890461	-	Atu4525	-	ABC transporter, substrate binding protein (oligopeptide)
1486	 60.68	0	1673665..1675485	-	606	15890460	-	Atu4526	-	ABC transporter, nucleotide binding/ATPase protein
1487	 64.81	+1	1675567..1675728	+	53	17938216	-	Atu4527	-	hypothetical protein
1488	 42.95	-2	1675753..1675908	+	51	15890459	-	Atu8041	-	hypothetical protein
1489	 55.78	-1	1676076..1676378	+	100	15890458	-	Atu4528	-	hypothetical protein
1490	 61.41	0	1676442..1678343	-	633	159186203	-	Atu4529	-	hypothetical protein
1491	 57.43	0	1678465..1679157	+	230	159186204	-	Atu4530	-	TetR family transcriptional regulator
1492	 58.56	0	1679132..1679575	-	147	159186205	aroQ	Atu4531	-	3-dehydroquinate dehydratase
1493	 62.53	0	1679572..1680441	-	289	15890454	aroE	Atu4532	-	shikimate 5-dehydrogenase
1494	 60.89	0	1680513..1681274	-	253	159186206	-	Atu4533	-	ABC transporter, nucleotide binding/ATPase protein (amino acid)
1495	 60.57	0	1681305..1682141	-	278	15890452	-	Atu4534	-	ABC transporter, substrate binding protein (amino acid)
1496	 58.57	0	1682178..1683017	-	279	159186207	-	Atu4535	-	ABC transporter, substrate binding protein (amino acid)
1497	 62.52	0	1683061..1683711	-	216	15890450	-	Atu4536	-	ABC transporter, membrane spanning protein (amino acid)
1498	 59.19	0	1683722..1684390	-	222	159186208	-	Atu4537	-	ABC transporter, membrane spanning protein (amino acid)
1499	 63.56	+1	1684759..1685820	-	353	15890448	pcaB	Atu4538	-	3-carboxy-cis,cis-muconate cycloisomerase
1500	 59.58	0	1685833..1686453	-	206	15890447	pcaG	Atu4539	-	protocatechuate 3,4-dioxygenase alpha chain
1501	 60.46	0	1686456..1687196	-	246	15890446	pcaH	Atu4540	-	protocatechuate 3,4-dioxygenase beta chain
1502	 61.38	0	1687193..1687627	-	144	15890445	pcaC	Atu4541	-	carboxymuconolactone decarboxylase
1503	 60.78	0	1687631..1688428	-	265	15890444	pcaD	Atu4542	-	beta-ketoadipate enol-lactone hydrolase
1504	 63.89	+1	1688524..1689459	+	311	159186209	pcaQ	Atu4543	-	LysR family transcriptional regulator
1505	 60.10	0	1689531..1690703	-	390	159186210	pobA	Atu4544	-	4-hydroxybenzoate 3-monooxygenase
1506	 60.93	0	1690822..1691745	+	307	159186211	pobR	Atu4545	-	AraC family transcriptional regulator
1507	 63.12	+1	1691715..1692476	-	253	159186212	pcaR	Atu4546	-	IclR family transcriptional regulator
1508	 60.59	0	1692615..1693322	+	235	15890439	pcaI	Atu4547	-	3-oxoadipate CoA-transferase subunit A
1509	 61.93	0	1693319..1694014	+	231	15890438	pcaJ	Atu4548	-	3-oxoadipate CoA-transferase subunit B
1510	 65.26	+1	1694025..1695230	+	401	159186213	pcaF	Atu4549	-	beta-ketoadipyl CoA thiolase
1511	 62.49	0	1695677..1696705	+	342	159186214	-	Atu4550	-	LacI family transcription regulator
1512	 59.98	0	1696990..1697931	+	313	159186215	-	Atu4551	-	ABC transporter, substrate binding protein
1513	 57.47	0	1698068..1698991	+	307	15890434	-	Atu4552	-	ABC transporter, substrate binding protein
1514	 59.20	0	1699041..1699937	+	298	15890433	iolH	Atu4553	-	myo-inositol catabolism protein
1515	 62.71	0	1699948..1700958	+	336	159186216	iolG	Atu4554	-	myo-inositol 2-dehydrogenase
1516	 61.96	0	1700967..1701752	+	261	159186217	-	Atu4555	-	hypothetical protein
1517	 63.94	+1	1701944..1703005	+	353	15890430	purR	Atu4556	-	LacI family transcription regulator
1518	 60.26	0	1703015..1703794	-	259	159186218	-	Atu4557	-	ABC transporter, membrane spanning protein (sugar)
1519	 59.64	0	1704067..1705062	-	331	159186219	-	Atu4558	-	ABC transporter, membrane spanning protein (sugar)
1520	 61.41	0	1705064..1706167	-	367	159186220	-	Atu4559	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1521	 62.26	0	1706167..1707528	-	453	15890426	-	Atu4560	-	polygalacturonase
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.