IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
96	 62.15	0	105280..106164	+	294	15891828	ugpE	Atu3098	-	sn-glycerol-3-phosphate ABC transporter membrane protein
97	 62.57	0	106196..107317	+	373	159185604	ugpC	Atu3099	-	glycerol-3-phosphate transporter ATP-binding subunit
98	 54.83	-1	107390..108217	-	275	15891826	-	Atu3100	-	ABC transporter, membrane spanning protein (sugar)
99	 55.63	-1	108214..109092	-	292	159185605	-	Atu3101	-	ABC transporter, membrane spanning protein (sugar)
100	 59.22	0	109168..110442	-	424	15891824	-	Atu3102	-	ABC transporter, substrate binding protein (sugar)
101	 61.36	0	110515..111588	-	357	15891823	-	Atu3103	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
102	 59.46	0	111596..113107	-	503	15891822	arfA	Atu3104	-	alpha-L-arabinofuranosidase
103	 57.53	0	113228..114157	-	309	15891821	celI	Atu3105	-	hypothetical protein
104	 59.29	0	114351..115637	-	428	159185606	-	Atu3106	-	ABC transporter, substrate binding protein (sugar)
105	 61.77	0	115756..116817	+	353	159185607	-	Atu3107	-	LacI family transcription regulator
106	 61.41	0	116810..118693	+	627	15891818	-	Atu3108	-	hypothetical protein
107	 61.65	0	118690..119706	+	338	15891817	-	Atu3109	-	2-hydroxyacid dehydrogenase
108	 61.09	0	119703..120491	+	262	15891816	-	Atu3110	-	hypothetical protein
109	 59.87	0	120666..121739	-	357	159185608	-	Atu3111	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
110	 58.22	0	121831..122706	-	291	15891814	-	Atu3112	-	ABC transporter, membrane spanning protein (sugar)
111	 55.97	-1	122699..123586	-	295	159185609	-	Atu3113	-	ABC transporter, membrane spanning protein (sugar)
112	 60.31	0	123659..124948	-	429	159185610	-	Atu3114	-	ABC transporter, substrate binding protein (sugar)
113	 58.66	0	125066..125764	+	232	15891811	-	Atu3115	-	TetR family transcriptional regulator
114	 60.07	0	126031..127152	+	373	159185611	-	Atu3116	-	oxidoreductase
115	 60.74	0	127163..128326	+	387	15891809	-	Atu3117	-	hypothetical protein
116	 64.11	+1	128351..129172	+	273	15891808	-	Atu3118	-	hypothetical protein
117	 59.95	0	129191..130426	+	411	15891807	-	Atu3119	-	hypothetical protein
118	 58.23	0	130448..130945	-	165	159185612	-	Atu3120	-	hypothetical protein
119	 54.29	-1	131190..131399	+	69	159185613	cspA	Atu3121	-	cold shock protein
120	 56.01	-1	131511..131801	+	96	159185614	-	Atu3122	-	cold shock protein
121	 57.81	0	131830..132066	+	78	17936834	rpsU	Atu3123	-	30S ribosomal protein S21
122	 58.33	0	132103..132318	+	71	15891804	-	Atu3124	-	hypothetical protein
123	 53.82	-1	133057..133344	+	95	15891803	-	Atu3126	-	hypothetical protein
124	 59.02	0	133736..134833	-	365	159185615	rspF	Atu3127	-	acetyltransferase
125	 60.56	0	134987..136084	-	365	159185616	yteR	Atu3128	-	di-trans,poly-cis-decaprenylcistransferase
126	 63.19	+1	136093..137646	-	517	15891800	picA	Atu3129	-	polygalacturonase-like protein
127	 59.18	0	137759..139027	-	422	159185617	-	Atu3130	-	ABC transporter, substrate binding protein (sugar)
128	 60.13	0	139071..140171	-	366	15891798	-	Atu3131	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
129	 58.19	0	140174..141058	-	294	15891797	-	Atu3132	-	ABC transporter, membrane spanning protein (sugar)
130	 56.12	-1	141063..141944	-	293	15891796	-	Atu3133	-	ABC transporter, membrane spanning protein (sugar)
131	 59.55	0	142157..143083	+	308	159185618	-	Atu3134	-	AraC family transcriptional regulator
132	 60.27	0	143113..144393	-	426	15891794	-	Atu3135	-	ABC transporter, membrane spanning protein
133	 60.15	0	144394..144915	-	173	159185619	-	Atu3136	-	ABC transporter, membrane spanning protein
134	 57.06	0	144986..145963	-	325	159185620	-	Atu3137	-	C4-dicarboxylate-binding protein
135	 63.03	+1	146107..146985	-	292	15891791	-	Atu3138	-	hypothetical protein
136	 63.41	+1	146982..148118	-	378	15891790	-	Atu3139	-	hypothetical protein
137	 60.31	0	148144..149055	-	303	159185621	-	Atu3140	-	5-dehydro-4-deoxyglucarate dehydratase
138	 60.35	0	149169..149912	-	247	15891788	kduD	Atu3141	-	2-deoxy-D-gluconate 3-dehydrogenase
139	 58.18	0	149909..150733	-	274	159185622	kduI	Atu3142	-	5-keto-4-deoxyuronate isomerase
140	 60.65	0	150872..151669	+	265	159185623	-	Atu3143	-	hypothetical protein
141	 65.85	+1	151759..152496	+	245	15891785	-	Atu3144	-	GntR family transcriptional regulator
142	 59.43	0	152547..152864	+	105	15891784	kdgF	Atu3145	-	pectin degradation protein
143	 63.26	+1	152887..154119	-	410	15891783	-	Atu3146	-	proline dipeptidase
144	 60.48	0	154354..156357	-	667	15891782	-	Atu3147	-	oxidoreductase
145	 60.22	0	156393..157478	-	361	15891781	-	Atu3148	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
146	 57.95	0	157488..158324	-	278	159185624	-	Atu3149	-	ABC transporter, membrane spanning protein (sugar)
147	 58.77	0	158321..159181	-	286	159185625	-	Atu3150	-	ABC transporter, membrane spanning protein (sugar)
148	 57.63	0	159439..160710	-	423	15891778	-	Atu3151	-	ABC transporter, substrate binding protein (sugar)
149	 58.92	0	160803..161693	+	296	15891777	-	Atu3152	-	AraC family transcriptional regulator
150	 59.88	0	161886..162740	-	284	159185626	-	Atu3153	-	AraC family transcriptional regulator
151	 62.82	+1	162866..164062	+	398	15891775	fsr	Atu3154	-	fosmidomycin resistance protein
152	 59.64	0	164146..165042	+	298	15891774	-	Atu3155	-	LysR family transcriptional regulator
153	 60.11	0	165067..166347	-	426	15891773	-	Atu3156	-	ABC transporter, membrane spanning protein
154	 60.69	0	166351..166902	-	183	159185627	-	Atu3157	-	ABC transporter, membrane spanning protein
155	 58.13	0	167043..168038	-	331	159185628	-	Atu3158	-	ABC transporter, substrate binding protein
156	 62.49	0	168140..169024	-	294	159185629	mmsB	Atu3159	-	3-hydroxyisobutyrate dehydrogenase
157	 55.78	-1	169078..169380	-	100	159185630	-	Atu3160	-	hypothetical protein
158	 61.43	0	169398..170867	-	489	15891768	-	Atu3161	-	hypothetical protein
159	 59.17	0	171019..172032	-	337	159185631	-	Atu3162	-	LacI family transcription regulator
160	 61.42	0	172147..173157	-	336	159185632	-	Atu3163	-	zinc-binding dehydrogenase
161	 60.70	0	173174..173944	-	256	159185633	-	Atu3164	-	sorbitol dehydrogenase
162	 59.49	0	174204..175457	-	417	159185634	-	Atu3165	-	ABC transporter, substrate binding protein (sorbitol/mannitol)
163	 64.04	+1	175837..176826	+	329	159185635	scrK	Atu3166	-	fructokinase
164	 62.52	0	176823..178100	+	425	15891762	agaZ	Atu3167	-	tagatose 6-phosphate kinase
165	 58.30	0	178224..179096	+	290	15891761	-	Atu3168	-	ABC transporter, membrane spanning protein (sorbitol/mannitol)
166	 60.24	0	179109..179933	+	274	15891760	-	Atu3169	-	ABC transporter, membrane spanning protein (sorbitol/mannitol)
167	 61.46	0	179946..180944	+	332	15891759	-	Atu3170	-	ABC transporter, nucleotide binding/ATPase protein (sorbitol/mannitol)
168	 63.05	+1	180955..182031	-	358	15891758	-	Atu3171	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
169	 56.80	0	182036..182866	-	276	15891757	-	Atu3172	-	ABC transporter, membrane spanning protein (sugar)
170	 60.23	0	182870..183754	-	294	159185636	-	Atu3173	-	ABC transporter, membrane spanning protein (sugar)
171	 58.41	0	183965..185224	-	419	15891755	-	Atu3174	-	ABC transporter, substrate binding protein (sugar)
172	 61.55	0	185263..186435	-	390	15891754	mdeA	Atu3175	-	hypothetical protein
173	 62.20	0	186432..187148	-	238	15891753	-	Atu3176	-	GntR family transcriptional regulator
174	 62.87	+1	187365..187838	-	157	15891752	rnhA	Atu3177	-	ribonuclease H
175	 58.97	0	188009..189022	-	337	15891751	-	Atu3178	-	ABC transporter, substrate binding protein
176	 63.21	+1	189051..189917	-	288	159185637	-	Atu3179	-	ABC transporter, membrane spanning protein
177	 61.87	0	189910..190743	-	277	15891749	-	Atu3180	-	ABC transporter, nucleotide binding/ATPase protein
178	 60.68	0	191044..192246	+	400	159185638	-	Atu3181	-	hypothetical protein
179	 60.27	0	192325..192762	-	145	159185639	-	Atu3182	-	hypothetical protein
180	 58.15	0	192860..193129	-	89	15891746	-	Atu3183	-	hypothetical protein
181	 61.59	0	193126..194169	-	347	159185640	-	Atu3184	-	hypothetical protein
182	 58.71	0	194587..195906	+	439	15891744	ugpB	Atu3185	-	ABC transporter, substrate binding protein (glycerol-3-phosphate)
183	 57.94	0	195977..196858	+	293	159185641	ugpA	Atu3186	-	ABC transporter, membrane spanning protein (glycerol-3-phosphate)
184	 56.42	0	196868..197716	+	282	15891742	ugpE	Atu3187	-	ABC transporter, membrane spanning protein (glycerol-3-phosphate)
185	 62.34	0	197716..198777	+	353	15891741	ugpC	Atu3188	-	glycerol-3-phosphate transporter ATP-binding subunit
186	 52.82	-2	198838..199581	-	247	15891740	-	Atu3189	-	hypothetical protein
187	 59.91	0	199903..200346	-	147	15891739	-	Atu3190	-	hypothetical protein
188	 58.95	0	200556..201242	-	228	15891738	-	Atu3191	-	outer membrane protein
189	 61.88	0	201516..202811	-	431	159185642	-	Atu3192	-	MFS permease
190	 63.43	+1	202881..203282	-	133	15891736	-	Atu3193	-	MarR family transcriptional regulator
191	 63.68	+1	203429..203998	-	189	15891735	-	Atu3194	-	acetyltransferase
192	 60.23	0	204249..205382	-	377	159185643	speF	Atu3196	-	ornithine decarboxylase
193	 59.62	0	205919..206812	+	297	159185644	ptxR	Atu3197	-	LysR family transcriptional regulator
194	 60.27	0	206885..207838	-	317	159185645	-	Atu3198	-	ABC transporter, substrate binding protein (ribose)
195	 61.88	0	207911..208912	-	333	159185646	-	Atu3199	-	ABC transporter, membrane spanning protein (ribose)
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.