IslandPath Analysis: Agrobacterium tumefaciens str. C58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.48   STD DEV: 3.31
Agrobacterium tumefaciens str. C58 chromosome linear, complete sequence - 1..2075577
1851 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1332	 59.04	0	1505684..1506706	+	340	15890614	rbsB	Atu4369	-	ABC transporter, substrate binding protein (sugar)
1333	 61.85	0	1506810..1508303	+	497	159186136	-	Atu4370	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1334	 62.65	0	1508300..1509244	+	314	15890612	-	Atu4371	-	ABC transporter, membrane spanning protein (sugar)
1335	 61.20	0	1509246..1510214	+	322	15890611	rbsC	Atu4372	-	ABC transporter, membrane spanning protein (ribose)
1336	 61.97	0	1510218..1511240	+	340	15890610	cytR	Atu4373	-	LacI family transcriptional regulator
1337	 59.81	0	1511274..1512323	+	349	15890609	-	Atu4374	-	hypothetical protein
1338	 63.33	+1	1512335..1513504	+	389	159186137	-	Atu4375	-	hypothetical protein
1339	 60.97	0	1513657..1514481	+	274	159186138	-	Atu4376	-	hypothetical protein
1340	 58.96	0	1514633..1516318	+	561	15890606	-	Atu4377	-	oxidoreductase
1341	 59.18	0	1516318..1516878	+	186	159186139	-	Atu4378	-	hypothetical protein
1342	 59.60	0	1516948..1517343	+	131	159186140	cy2	Atu4379	-	cytochrome c2
1343	 62.96	+1	1517414..1518115	-	233	159186141	nnrR	Atu4380	-	Crp family transcriptional regulator
1344	 62.31	0	1518265..1519182	-	305	159186142	nirV	Atu4381	-	nitrite reductase, NirV precursor
1345	 61.59	0	1519291..1520433	-	380	159186143	nirK	Atu4382	-	nitrite reductase, copper-containing
1346	 63.18	+1	1520670..1521902	+	410	159186144	-	Atu4383	-	hypothetical protein
1347	 62.17	0	1521986..1522519	-	177	15890599	-	Atu4384	-	hypothetical protein
1348	 60.22	0	1522598..1523047	-	149	15890598	-	Atu4385	-	hypothetical protein
1349	 64.56	+1	1523047..1524945	-	632	15890597	norD	Atu4386	-	nitric oxide reductase NorD protein
1350	 62.85	+1	1525017..1525829	-	270	159186145	norQ	Atu4387	-	nitric oxide reductase NorQ protein
1351	 57.83	0	1525894..1527240	-	448	15890595	norB	Atu4388	-	nitric oxide reductase, cytochrome b subunit
1352	 58.72	0	1527265..1527717	-	150	159186146	norC	Atu4389	-	nitric oxide reductase, cytochrome c-containing subunit
1353	 63.00	+1	1527884..1528183	-	99	15890593	norF	Atu8197	-	NorF protein
1354	 59.36	0	1528180..1528713	-	177	159186147	norE	Atu4391	-	nitric oxide reductase NorE protein
1355	 58.93	0	1528839..1529006	+	55	15890591	-	Atu8040	-	hypothetical protein
1356	 65.04	+1	1529019..1529696	+	225	15890590	nnrU	Atu4392	-	denitrification regulatory protein
1357	 62.27	0	1529701..1530291	-	196	15890589	-	Atu4393	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1358	 62.94	+1	1530288..1531844	-	518	159186148	-	Atu4394	-	hypothetical protein
1359	 58.69	0	1531871..1532221	-	116	159186149	-	Atu4395	-	hypothetical protein
1360	 62.98	+1	1532371..1532886	+	171	15890586	-	Atu4396	-	hypothetical protein
1361	 63.29	+1	1532877..1533854	+	325	15890585	-	Atu4397	-	protease
1362	 63.05	+1	1533860..1534798	+	312	159186150	-	Atu4398	-	hypothetical protein
1363	 61.64	0	1534795..1535172	+	125	15890583	-	Atu4399	-	hypothetical protein
1364	 62.26	0	1535270..1537423	+	717	15890582	-	Atu4400	-	ferrienterobactin-like protein
1365	 63.82	+1	1537442..1538425	+	327	15890581	-	Atu4401	-	hypothetical protein
1366	 65.68	+1	1538431..1539240	+	269	15890580	-	Atu4402	-	ABC transporter, membrane spanning protein (anion)
1367	 62.02	0	1539237..1539989	+	250	159186151	-	Atu4403	-	ABC transporter, nucleotide binding/ATPase protein (anion)
1368	 63.22	+1	1539986..1541173	+	395	15890578	-	Atu4404	-	hypothetical protein
1369	 58.60	0	1541384..1541569	+	61	15890577	napE	Atu4405	-	periplasmic nitrate reductase protein NapE
1370	 63.07	+1	1541577..1542077	+	166	15890576	napF	Atu4406	-	periplasmic nitrate reductase, ferredoxin-like protein
1371	 56.60	0	1542070..1542357	+	95	15890575	napD	Atu4407	-	periplasmic nitrate reductase, NapD protein
1372	 60.68	0	1542332..1544836	+	834	15890574	napA	Atu4408	-	nitrate reductase
1373	 61.59	0	1544806..1545297	+	163	15890573	napB	Atu4409	-	periplasmic nitrate reductase small subunit
1374	 58.83	0	1545294..1545995	+	233	15890572	napC	Atu4410	-	periplasmic nitrate reductase, cytochrome c-type protein
1375	 63.77	+1	1546039..1546902	-	287	159186152	-	Atu4411	-	LysR family transcriptional regulator
1376	 58.86	0	1547273..1553086	+	1937	159186153	rzcA	Atu4412	-	rhizobiocin/RTX toxin
1377	 61.99	0	1553197..1554948	+	583	159186154	rspD	Atu4413	-	ABC transporter, nucleotide binding/ATPase protein (bacteriocin)
1378	 60.46	0	1554951..1556255	+	434	159186155	rspE	Atu4414	-	ABC transporter, membrane spanning protein (bacteriocin)
1379	 61.91	0	1556572..1558485	-	637	159186156	-	Atu4415	-	hypothetical protein
1380	 61.79	0	1558615..1559331	-	238	15890566	-	Atu4416	-	phosphopantetheinyl transferase
1381	 59.85	0	1559543..1560730	-	395	15890565	gcdH	Atu4418	-	glutaryl-CoA dehydrogenase
1382	 61.67	0	1560827..1561747	+	306	15890564	-	Atu4419	-	LysR family transcriptional regulator
1383	 63.37	+1	1561882..1562943	+	353	159186157	-	Atu4420	-	LacI family transcription regulator
1384	 58.16	0	1562940..1563962	+	340	15890562	-	Atu4421	-	ABC transporter, substrate binding protein (spermidine/putrescine)
1385	 58.82	0	1564129..1564956	+	275	159186158	-	Atu4422	-	ABC transporter, membrane spanning protein (spermidine/putrescine)
1386	 58.72	0	1564953..1565732	+	259	15890560	-	Atu4423	-	ABC transporter, membrane spanning protein
1387	 60.04	0	1565725..1566750	+	341	15890559	-	Atu4424	-	ABC transporter, nucleotide binding/ATPase protein (spermidine/putrescine)
1388	 63.52	+1	1566753..1567673	+	306	15890558	iunH	Atu4425	-	inosine-uridine preferring nucleoside hydrolase
1389	 64.27	+1	1567670..1569463	+	597	15890557	adeC	Atu4426	-	adenine deaminase
1390	 55.84	-1	1569515..1570216	-	233	159186159	-	Atu4427	-	replicative DNA helicase
1391	 64.44	+1	1570433..1571644	-	403	159186160	-	Atu4428	-	amidohydrolase
1392	 62.71	0	1571818..1572525	+	235	15890554	-	Atu4429	-	phosphoribosyltransferase
1393	 61.65	0	1572731..1573786	+	351	159186161	-	Atu4430	-	dipeptidase
1394	 57.51	0	1573837..1575474	+	545	15890552	-	Atu4431	-	ABC transporter, substrate binding protein (oligopeptide)
1395	 59.64	0	1575496..1576563	+	355	15890551	-	Atu4432	-	ABC transporter, membrane spanning protein (oligopeptide)
1396	 62.17	0	1576560..1577492	+	310	15890550	-	Atu4433	-	ABC transporter, membrane spanning protein (oligopeptide)
1397	 62.49	0	1577489..1578325	+	278	15890549	-	Atu4434	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1398	 61.20	0	1578322..1579071	+	249	159186162	-	Atu4435	-	ABC transporter, nucleotide binding/ATPase protein (oligopeptide)
1399	 63.10	+1	1579171..1580208	+	345	159186163	tnp	Atu4436	-	IS5 family transposase
1400	 62.90	+1	1580559..1581461	+	300	159186164	-	Atu4437	-	LysR family transcriptional regulator
1401	 59.18	0	1581671..1583206	+	511	159186165	-	Atu4438	-	ABC transporter, substrate binding protein (oligopeptide)
1402	 62.46	0	1583401..1584351	+	316	15890544	-	Atu4439	-	ABC transporter, membrane spanning protein (oligopeptide)
1403	 62.88	+1	1584351..1585169	+	272	159186166	-	Atu4440	-	ABC transporter, membrane spanning protein (oligopeptide)
1404	 62.80	+1	1585223..1586620	+	465	15890542	gatA	Atu4441	-	amidase
1405	 63.57	+1	1586735..1587283	+	182	159186167	-	Atu4442	-	hypothetical protein
1406	 56.13	-1	1587355..1587705	+	116	159186168	-	Atu4443	-	hypothetical protein
1407	 61.60	0	1587919..1589043	+	374	15890539	-	Atu4444	-	hippurate hydrolase
1408	 60.89	0	1589092..1590942	+	616	15890538	-	Atu4445	-	ABC transporter, nucleotide binding/ATPase protein
1409	 62.26	0	1591236..1592189	+	317	15890537	-	Atu4446	-	hypothetical protein
1410	 58.90	0	1592333..1593646	+	437	159186169	-	Atu4447	-	ABC transporter, substrate binding protein (sorbitol)
1411	 59.78	0	1593675..1594691	+	338	159186170	-	Atu4448	-	ABC transporter, membrane spanning protein (sorbitol/mannitol)
1412	 60.00	0	1594704..1595528	+	274	15890534	-	Atu4449	-	ABC transporter, membrane spanning protein (sorbitol/mannitol)
1413	 60.76	0	1595541..1596539	+	332	15890533	-	Atu4450	-	ABC transporter, nucleotide binding/ATPase protein (sugar)
1414	 58.92	0	1596665..1598149	+	494	159186171	mtlK	Atu4451	-	mannitol 2-dehydrogenase
1415	 62.22	0	1598156..1598875	+	239	15890531	-	Atu4452	-	hypothetical protein
1416	 65.27	+1	1598930..1600507	+	525	15890530	-	Atu4453	-	ribitol kinase
1417	 62.16	0	1600612..1601409	-	265	159186172	-	Atu4454	-	RpiR family transcriptional regulator
1418	 61.38	0	1601741..1602478	+	245	15890528	-	Atu4456	-	CysZ-like protein
1419	 59.26	0	1602440..1603222	-	260	15890527	-	Atu4457	-	endonuclease III
1420	 61.70	0	1603260..1603742	+	160	15890526	-	Atu4458	-	hypothetical protein
1421	 63.12	+1	1604009..1604881	+	290	15890525	ada	Atu4459	-	6-O-methylguanine-DNA methyltransferase
1422	 51.05	-2	1604934..1605170	+	78	15890524	-	Atu4460	-	hypothetical protein
1423	 56.60	0	1605176..1605463	+	95	15890523	-	Atu4461	-	hypothetical protein
1424	 62.89	+1	1605460..1606491	-	343	15890522	-	Atu4462	-	transcriptional regulator
1425	 61.80	0	1606687..1607652	+	321	15890521	talB	Atu4464	-	transaldolase B
1426	 64.19	+1	1607759..1608526	-	255	15890520	kdgR	Atu4465	-	transcriptional regulator
1427	 62.02	0	1608724..1609455	+	243	159186173	-	Atu4466	-	oxidoreductase
1428	 55.75	-1	1609511..1609684	-	57	159186174	-	Atu4467	-	hypothetical protein
1429	 59.77	0	1609891..1610745	-	284	15890517	sitD	Atu4468	-	ABC transporter, membrane spanning protein (iron transport)
1430	 60.63	0	1610742..1611602	-	286	159186175	sitC	Atu4469	-	ABC transporter, membrane spanning protein (iron)
1431	 59.14	0	1611583..1612485	-	300	159186176	sitB	Atu4470	-	ABC transporter, nucleotide binding/ATPase protein (iron)
59.48	MEAN

3.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.